Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context FLG 2312 broad.mit.edu 36 1 150545247 150545247 + Missense_Mutation SNP T T G novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150545247 150545247 FLG 1 T T G 62 ATP1A4 480 broad.mit.edu 36 1 158411008 158411008 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 158411008 158411008 ATP1A4 1 G G A 40 C1orf111 284680 broad.mit.edu 36 1 160610926 160610926 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 160610926 160610926 C1orf111 1 C C T 32 KIAA1614 57710 broad.mit.edu 36 1 179176913 179176913 + Missense_Mutation SNP T T A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179176913 179176913 KIAA1614 1 T T A 56 CAPN9 10753 broad.mit.edu 36 1 228992534 228992534 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 228992534 228992534 CAPN9 1 G G A 48 UBE2L6 9246 broad.mit.edu 36 11 57084412 57084412 + Silent SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 57084412 57084412 UBE2L6 11 G G A 35 TBX10 347853 broad.mit.edu 36 11 67158235 67158235 + Splice_Site_SNP SNP C C A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 67158235 67158235 TBX10 11 C C A 19 C12orf44 60673 broad.mit.edu 36 12 50753912 50753912 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50753912 50753912 C12orf44 12 G G A 41 PPFIA2 8499 broad.mit.edu 36 12 80195231 80195231 + Silent SNP T T A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 80195231 80195231 PPFIA2 12 T T A 61 RPGRIP1 57096 broad.mit.edu 36 14 20881203 20881203 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20881203 20881203 RPGRIP1 14 G G A 33 CDC42BPB 9578 broad.mit.edu 36 14 102481752 102481752 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102481752 102481752 CDC42BPB 14 C C G 21 AGBL1 123624 broad.mit.edu 36 15 84898708 84898708 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 84898708 84898708 AGBL1 15 T T C 51 PRPF8 10594 broad.mit.edu 36 17 1510542 1510542 + Silent SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 1510542 1510542 PRPF8 17 G G A 45 G6PC3 92579 broad.mit.edu 36 17 39508217 39508217 + Silent SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 39508217 39508217 G6PC3 17 C C T 28 RPRD1A 55197 broad.mit.edu 36 18 31860957 31860957 + Silent SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 31860957 31860957 RPRD1A 18 C C T 23 OR10H1 26539 broad.mit.edu 36 19 15779819 15779819 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15779819 15779819 OR10H1 19 G G C 44 NUMBL 9253 broad.mit.edu 36 19 45875163 45875163 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45875163 45875163 NUMBL 19 C C T 31 SP3 6670 broad.mit.edu 36 2 174528838 174528838 + Silent SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 174528838 174528838 SP3 2 G G A 35 ALS2 57679 broad.mit.edu 36 2 202306340 202306340 + Silent SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 202306340 202306340 ALS2 2 C C T 20 THBD 7056 broad.mit.edu 36 20 22976780 22976780 + Silent SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 22976780 22976780 THBD 20 C C T 17 CASS4 57091 broad.mit.edu 36 20 54461131 54461131 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 54461131 54461131 CASS4 20 C C T 23 TTC14 151613 broad.mit.edu 36 3 181810311 181810311 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 181810311 181810311 TTC14 3 G G C 33 RAB28 9364 broad.mit.edu 36 4 12979362 12979362 + Missense_Mutation SNP T T G novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12979362 12979362 RAB28 4 T T G 56 COL25A1 84570 broad.mit.edu 36 4 110000291 110000291 + Missense_Mutation SNP G G C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110000291 110000291 COL25A1 4 G G C 36 MAST4 375449 broad.mit.edu 36 5 66495310 66495310 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66495310 66495310 MAST4 5 G G A 39 PRSS16 10279 broad.mit.edu 36 6 27330600 27330600 + Missense_Mutation SNP C C G novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 27330600 27330600 PRSS16 6 C C G 22 FUT9 10690 broad.mit.edu 36 6 96758385 96758385 + Missense_Mutation SNP A A C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 96758385 96758385 FUT9 6 A A C 1 KIAA1919 91749 broad.mit.edu 36 6 111694117 111694117 + Missense_Mutation SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111694117 111694117 KIAA1919 6 C C T 17 ADCY1 107 broad.mit.edu 36 7 45663954 45663954 + Missense_Mutation SNP G G A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45663954 45663954 ADCY1 7 G G A 40 VSTM2A 222008 broad.mit.edu 36 7 54579852 54579852 + Silent SNP G G T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 54579852 54579852 VSTM2A 7 G G T 42 CCDC132 55610 broad.mit.edu 36 7 92808792 92808792 + Silent SNP T T C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 92808792 92808792 CCDC132 7 T T C 60 SHARPIN 81858 broad.mit.edu 36 8 145225878 145225878 + Nonsense_Mutation SNP C C T novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 145225878 145225878 SHARPIN 8 C C T 21 DNAJB5 25822 broad.mit.edu 36 9 34987056 34987056 + Missense_Mutation SNP A A C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34987056 34987056 DNAJB5 9 A A C 16 GPR119 139760 broad.mit.edu 36 X 129346247 129346247 + Missense_Mutation SNP C C A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129346247 129346247 GPR119 23 C C A 18 TP53 7157 broad.mit.edu 36 17 7518915 7518915 + Missense_Mutation SNP T T C novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7518915 7518915 TP53 17 T T C 49 NNT 23530 broad.mit.edu 36 5 43651835 43651835 + Frame_Shift_Del DEL A - A novel Unknown TCGA-61-1728-01 TCGA-61-1728-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 43651835 43651835 NNT 5 A - A 9