Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACOT12	134526	hgsc.bcm.edu	36	5	80677567	80677567	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	80677567	80677567	ACOT12	5	C	C	T	22
CCR9	10803	hgsc.bcm.edu	36	3	45918067	45918067	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45918067	45918067	CCR9	3	C	C	T	23
DLX2	1746	hgsc.bcm.edu	36	2	172675111	172675111	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	172675111	172675111	DLX2	2	A	A	G	14
EFEMP1	2202	hgsc.bcm.edu	36	2	55998334	55998335	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	55998334	55998335	EFEMP1	2	AG	AG	-	15
FIG4	9896	hgsc.bcm.edu	36	6	110194626	110194626	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110194626	110194626	FIG4	6	T	T	G	60
IL1RL2	8808	hgsc.bcm.edu	36	2	102184517	102184517	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102184517	102184517	IL1RL2	2	G	G	A	42
LAMB2	3913	hgsc.bcm.edu	36	3	49144735	49144735	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	49144735	49144735	LAMB2	3	C	C	A	26
MACF1	23499	hgsc.bcm.edu	36	1	39625884	39625884	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39625884	39625884	MACF1	1	A	A	G	11
MANBA	4126	hgsc.bcm.edu	36	4	103864166	103864166	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	103864166	103864166	MANBA	4	A	A	G	8
NRCAM	4897	hgsc.bcm.edu	36	7	107612115	107612115	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	107612115	107612115	NRCAM	7	A	A	G	14
NSMAF	8439	hgsc.bcm.edu	36	8	59670733	59670733	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59670733	59670733	NSMAF	8	G	G	A	48
PASK	23178	hgsc.bcm.edu	36	2	241695558	241695558	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	241695558	241695558	PASK	2	G	G	A	46
PLEKHA8	84725	hgsc.bcm.edu	36	7	30061427	30061427	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30061427	30061427	PLEKHA8	7	G	G	T	36
SCGN	10590	hgsc.bcm.edu	36	6	25773225	25773225	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25773225	25773225	SCGN	6	G	G	A	40
TACC3	10460	hgsc.bcm.edu	36	4	1700105	1700106	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	1700105	1700106	TACC3	4	-	-	C	10
TG	7038	hgsc.bcm.edu	36	8	134103556	134103556	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134103556	134103556	TG	8	G	G	A	48
TMEM18	129787	hgsc.bcm.edu	36	2	662847	662847	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	662847	662847	TMEM18	2	C	C	A	17
VCAN	1462	hgsc.bcm.edu	36	5	82852061	82852061	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82852061	82852061	VCAN	5	C	C	T	32
ZBTB5	9925	hgsc.bcm.edu	36	9	37432044	37432044	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1574-01	TCGA-36-1574-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37432044	37432044	ZBTB5	9	C	C	T	28