Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
BFAR	51283	hgsc.bcm.edu	36	16	14656541	14656542	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	14656541	14656542	BFAR	16	-	-	C	34
CPXM2	119587	hgsc.bcm.edu	36	10	125529706	125529706	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	125529706	125529706	CPXM2	10	A	A	C	4
EIF2S3	1968	hgsc.bcm.edu	36	X	23996091	23996091	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23996091	23996091	EIF2S3	23	A	A	T	16
HNF1A	6927	hgsc.bcm.edu	36	12	119921766	119921766	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119921766	119921766	HNF1A	12	G	G	A	34
MARCH2	51257	hgsc.bcm.edu	36	19	8397569	8397569	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8397569	8397569	MARCH2	19	A	A	T	6
MORC1	27136	hgsc.bcm.edu	36	3	110206787	110206787	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	110206787	110206787	MORC1	3	G	G	A	35
SETD2	29072	hgsc.bcm.edu	36	3	47137595	47137595	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47137595	47137595	SETD2	3	C	C	G	29
SLC12A5	57468	hgsc.bcm.edu	36	20	44107056	44107056	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44107056	44107056	SLC12A5	20	C	C	T	26
TP53	7157	hgsc.bcm.edu	36	17	7520254	7520254	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	7520254	7520254	TP53	17	C	C	T	21
TRIM58	25893	hgsc.bcm.edu	36	1	246106397	246106397	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-36-1569-01	TCGA-36-1569-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	246106397	246106397	TRIM58	1	A	A	G	3