Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCC4	10257	hgsc.bcm.edu	36	13	94656996	94656996	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94656996	94656996	ABCC4	13	C	C	T	24
AFF4	27125	hgsc.bcm.edu	36	5	132298245	132298245	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	132298245	132298245	AFF4	5	G	G	A	38
BAT3	7917	hgsc.bcm.edu	36	6	31722165	31722165	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	31722165	31722165	BAT3	6	C	C	T	23
C5orf35	133383	hgsc.bcm.edu	36	5	56248457	56248457	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56248457	56248457	C5orf35	5	T	T	A	64
CDC20	991	hgsc.bcm.edu	36	1	43600550	43600550	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43600550	43600550	CDC20	1	C	C	A	26
CYP4A11	1579	hgsc.bcm.edu	36	1	47173864	47173864	+	Missense_Mutation	SNP	C	C	A	rs62618709	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47173864	47173864	CYP4A11	1	C	C	A	18
IGDCC4	57722	hgsc.bcm.edu	36	15	63480268	63480268	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63480268	63480268	IGDCC4	15	G	G	C	33
MFRP	83552	hgsc.bcm.edu	36	11	118718610	118718610	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118718610	118718610	MFRP	11	T	T	A	54
NF1	4763	hgsc.bcm.edu	36	17	26574697	26574697	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26574697	26574697	NF1	17	C	C	T	32
PABPC1	26986	hgsc.bcm.edu	36	8	101799240	101799240	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101799240	101799240	PABPC1	8	G	G	A	40
PLEKHA7	144100	hgsc.bcm.edu	36	11	16849266	16849266	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	16849266	16849266	PLEKHA7	11	C	C	T	23
RAB3GAP1	22930	hgsc.bcm.edu	36	2	135636647	135636648	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	135636647	135636648	RAB3GAP1	2	-	-	A	61
RXRA	6256	hgsc.bcm.edu	36	9	136453473	136453473	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	136453473	136453473	RXRA	9	G	G	T	44
SASH3	54440	hgsc.bcm.edu	36	X	128749644	128749644	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128749644	128749644	SASH3	23	C	C	A	27
SEMA5B	54437	hgsc.bcm.edu	36	3	124125229	124125229	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	124125229	124125229	SEMA5B	3	G	G	A	45
SFMBT1	51460	hgsc.bcm.edu	36	3	52935168	52935168	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52935168	52935168	SFMBT1	3	G	G	A	34
SPAG17	200162	hgsc.bcm.edu	36	1	118445922	118445922	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118445922	118445922	SPAG17	1	G	G	A	38
STAB2	55576	hgsc.bcm.edu	36	12	102629420	102629420	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102629420	102629420	STAB2	12	G	G	A	38
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	27
TXNDC15	79770	hgsc.bcm.edu	36	5	134257108	134257108	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1633-01	TCGA-25-1633-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134257108	134257108	TXNDC15	5	G	G	A	39