Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427713	159427713	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159427713	159427713	ADAMTS4	1	C	C	G	20
AMPD2	271	hgsc.bcm.edu	36	1	109970328	109970328	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	109970328	109970328	AMPD2	1	G	G	A	39
ANG	283	hgsc.bcm.edu	36	14	20231685	20231685	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20231685	20231685	ANG	14	A	A	T	1
BRCA1	672	hgsc.bcm.edu	36	17	38509760	38509760	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	38509760	38509760	BRCA1	17	C	C	A	29
C10orf137	26098	hgsc.bcm.edu	36	10	127424275	127424275	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	127424275	127424275	C10orf137	10	C	C	G	32
C3orf59	151963	hgsc.bcm.edu	36	3	193999858	193999858	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	193999858	193999858	C3orf59	3	C	C	G	32
C6orf142	90523	hgsc.bcm.edu	36	6	54174992	54174992	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	54174992	54174992	C6orf142	6	T	T	C	59
CES7	221223	hgsc.bcm.edu	36	16	54452929	54452929	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54452929	54452929	CES7	16	G	G	T	34
COL6A3	1293	hgsc.bcm.edu	36	2	237914353	237914353	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	237914353	237914353	COL6A3	2	G	G	C	36
COL9A1	1297	hgsc.bcm.edu	36	6	71060652	71060652	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71060652	71060652	COL9A1	6	A	A	G	4
FBN3	84467	hgsc.bcm.edu	36	19	8106925	8106925	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8106925	8106925	FBN3	19	C	C	A	27
FRG1	2483	hgsc.bcm.edu	36	4	191099194	191099194	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	191099194	191099194	FRG1	4	C	C	T	31
HEXA	3073	hgsc.bcm.edu	36	15	70427491	70427491	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70427491	70427491	HEXA	15	T	T	C	64
ILVBL	10994	hgsc.bcm.edu	36	19	15089699	15089699	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15089699	15089699	ILVBL	19	A	A	T	7
IPO5	3843	hgsc.bcm.edu	36	13	97450847	97450847	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	97450847	97450847	IPO5	13	G	G	T	41
KCNJ1	3758	hgsc.bcm.edu	36	11	128214571	128214571	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128214571	128214571	KCNJ1	11	A	A	T	3
KCTD14	65987	hgsc.bcm.edu	36	11	77405438	77405438	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77405438	77405438	KCTD14	11	G	G	A	38
KIT	3815	hgsc.bcm.edu	36	4	55288401	55288401	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	55288401	55288401	KIT	4	C	C	A	17
MPI	4351	hgsc.bcm.edu	36	15	72975547	72975547	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72975547	72975547	MPI	15	G	G	A	39
NAE1	8883	hgsc.bcm.edu	36	16	65400416	65400416	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65400416	65400416	NAE1	16	T	T	G	50
NFKB1	4790	hgsc.bcm.edu	36	4	103724953	103724953	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	103724953	103724953	NFKB1	4	G	G	A	39
OR1E2	8388	hgsc.bcm.edu	36	17	3283543	3283543	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	3283543	3283543	OR1E2	17	G	G	-	35
OR2W1	26692	hgsc.bcm.edu	36	6	29120145	29120145	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29120145	29120145	OR2W1	6	C	C	A	24
OTOF	9381	hgsc.bcm.edu	36	2	26537068	26537068	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26537068	26537068	OTOF	2	T	T	C	62
OTOF	9381	hgsc.bcm.edu	36	2	26537253	26537253	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26537253	26537253	OTOF	2	G	G	A	39
PCOLCE	5118	hgsc.bcm.edu	36	7	100043349	100043350	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	100043349	100043350	PCOLCE	7	-	-	C	46
PREX2	80243	hgsc.bcm.edu	36	8	69168445	69168445	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69168445	69168445	PREX2	8	C	C	A	24
RENBP	5973	hgsc.bcm.edu	36	X	152858822	152858822	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152858822	152858822	RENBP	23	A	A	G	8
SAMD9L	219285	hgsc.bcm.edu	36	7	92601456	92601456	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	92601456	92601456	SAMD9L	7	G	G	A	40
SLC4A7	9497	hgsc.bcm.edu	36	3	27473170	27473170	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	27473170	27473170	SLC4A7	3	T	T	C	50
SLIT3	6586	hgsc.bcm.edu	36	5	168043640	168043640	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	168043640	168043640	SLIT3	5	C	C	A	24
SRRM2	23524	hgsc.bcm.edu	36	16	2753121	2753121	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2753121	2753121	SRRM2	16	C	C	T	32
TMPRSS11B	132724	hgsc.bcm.edu	36	4	68779575	68779575	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	68779575	68779575	TMPRSS11B	4	G	G	T	36
TP53	7157	hgsc.bcm.edu	36	17	7518928	7518928	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1625-01	TCGA-25-1625-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518928	7518928	TP53	17	C	C	T	17