Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SRRM1	10250	genome.wustl.edu	36	1	24850623	24850623	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	24850623	24850623	SRRM1	1	A	A	G	2
TTN	7273	genome.wustl.edu	36	2	179190353	179190355	+	In_Frame_Del	DEL	CTT	CTT	-	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	CTT	CTT	CTT	-	CTT	CTT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	179190353	179190355	TTN	2	CTT	CTT	-	24
LHCGR	3973	genome.wustl.edu	36	2	48768857	48768857	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48768857	48768857	LHCGR	2	A	A	G	16
GRB14	2888	genome.wustl.edu	36	2	165112482	165112482	+	Silent	SNP	G	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	A	G	G	G	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Silent	SNP	165112482	165112482	GRB14	2	G	A	G	35
DAPK1	1612	genome.wustl.edu	36	9	89501872	89501872	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Silent	SNP	89501872	89501872	DAPK1	9	C	C	T	30
TP53	7157	genome.wustl.edu	36	17	7518960	7518960	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_III	PCR	454_PCR_WGA		dbGAP	ABI 3730xl	WashU	Missense_Mutation	SNP	7518960	7518960	TP53	17	T	T	C	49
CDK12	51755	genome.wustl.edu	36	17	34921343	34921343	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	34921343	34921343	CDK12	17	A	A	G	14
MUC16	94025	genome.wustl.edu	36	19	8936296	8936296	+	Missense_Mutation	SNP	T	A	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	T	T	A	T	T	T	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	8936296	8936296	MUC16	19	T	A	T	64
ZNF675	171392	genome.wustl.edu	36	19	23628887	23628887	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_III	Capture	454_PCR_WGA		dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23628887	23628887	ZNF675	19	A	A	G	8
CFHR4	10877	genome.wustl.edu	36	1	195138355	195138355	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	195138355	195138355	CFHR4	1	G	G	A	39
RNF220	55182	genome.wustl.edu	36	1	44650891	44650891	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	44650891	44650891	RNF220	1	G	G	A	44
CAMK1D	57118	genome.wustl.edu	36	10	12898306	12898306	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	12898306	12898306	CAMK1D	10	C	C	T	19
PTPN5	84867	genome.wustl.edu	36	11	18707988	18707988	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18707988	18707988	PTPN5	11	A	A	T	7
FIBP	9158	genome.wustl.edu	36	11	65408520	65408520	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	65408520	65408520	FIBP	11	C	C	T	27
PYROXD1	79912	genome.wustl.edu	36	12	21507026	21507026	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21507026	21507026	PYROXD1	12	G	G	C	48
KIF21A	55605	genome.wustl.edu	36	12	37981704	37981704	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	37981704	37981704	KIF21A	12	C	C	A	21
LOC100131403		genome.wustl.edu	36	12	48631219	48631219	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48631219	48631219	LOC100131403	12	C	T	T	27
SCN8A	6334	genome.wustl.edu	36	12	50386588	50386588	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	50386588	50386588	SCN8A	12	A	A	G	3
OR10A7	121364	genome.wustl.edu	36	12	53901945	53901945	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	53901945	53901945	OR10A7	12	C	C	T	19
NAV3	89795	genome.wustl.edu	36	12	77040268	77040268	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	77040268	77040268	NAV3	12	G	G	A	45
MYO16	23026	genome.wustl.edu	36	13	108338817	108338817	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	108338817	108338817	MYO16	13	A	A	T	12
STOML3	161003	genome.wustl.edu	36	13	38439003	38439003	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	38439003	38439003	STOML3	13	C	C	T	19
DGKH	160851	genome.wustl.edu	36	13	41691919	41691919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41691919	41691919	DGKH	13	G	G	A	36
SLITRK5	26050	genome.wustl.edu	36	13	87127446	87127446	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	87127446	87127446	SLITRK5	13	C	C	A	18
C15orf33	196951	genome.wustl.edu	36	15	47621290	47621290	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	47621290	47621290	C15orf33	15	A	A	G	12
UNC13C	440279	genome.wustl.edu	36	15	52647435	52647435	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	52647435	52647435	UNC13C	15	A	A	C	7
MNS1	55329	genome.wustl.edu	36	15	54508658	54508658	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	54508658	54508658	MNS1	15	A	A	G	4
MT1M	4499	genome.wustl.edu	36	16	55224761	55224761	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	55224761	55224761	MT1M	16	T	T	C	55
LRRC50	123872	genome.wustl.edu	36	16	82745725	82745725	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	82745725	82745725	LRRC50	16	G	G	A	38
SYNRG	11276	genome.wustl.edu	36	17	32976327	32976327	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	32976327	32976327	SYNRG	17	G	G	A	37
PSG6	5675	genome.wustl.edu	36	19	48103123	48103123	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48103123	48103123	PSG6	19	C	C	T	19
SIGLEC14		genome.wustl.edu	36	19	56841005	56841005	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	56841005	56841005	SIGLEC14	19	G	G	A	40
POTEF	728378	genome.wustl.edu	36	2	130549478	130549478	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	130549478	130549478	POTEF	2	A	A	G	16
PPIL3	53938	genome.wustl.edu	36	2	201460795	201460795	+	Splice_Site_SNP	SNP	C	C	T		Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	201460795	201460795	PPIL3	2	C	C	T	27
RPL37A	6168	genome.wustl.edu	36	2	217072952	217072952	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	217072952	217072952	RPL37A	2	C	C	T	20
DOCK10	55619	genome.wustl.edu	36	2	225378178	225378178	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	225378178	225378178	DOCK10	2	G	G	A	40
KCND2	3751	genome.wustl.edu	36	7	119702341	119702341	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	119702341	119702341	KCND2	7	G	G	A	38
RAPGEF5	9771	genome.wustl.edu	36	7	22314494	22314494	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	22314494	22314494	RAPGEF5	7	G	G	A	46
PHTF2	57157	genome.wustl.edu	36	7	77389987	77389987	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	77389987	77389987	PHTF2	7	C	C	T	31
AKNA	80709	genome.wustl.edu	36	9	116179491	116179491	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	116179491	116179491	AKNA	9	C	C	T	32
UAP1L1	91373	genome.wustl.edu	36	9	139096287	139096287	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	139096287	139096287	UAP1L1	9	G	G	A	33
KIAA1797	54914	genome.wustl.edu	36	9	20705367	20705367	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	20705367	20705367	KIAA1797	9	C	C	A	29
AGTPBP1	23287	genome.wustl.edu	36	9	87477343	87477343	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	87477343	87477343	AGTPBP1	9	C	C	T	25
ODZ1	10178	genome.wustl.edu	36	X	123345669	123345669	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1322-01	TCGA-25-1322-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	123345669	123345669	ODZ1	23	C	C	T	27