Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ZBTB17 7709 broad.mit.edu 36 1 16141745 16141745 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16141745 16141745 ZBTB17 1 G G C 44 HTR6 3362 broad.mit.edu 36 1 19878209 19878209 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19878209 19878209 HTR6 1 C C T 26 USP48 84196 broad.mit.edu 36 1 21889074 21889074 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 21889074 21889074 USP48 1 C C A 29 CYP4A11 1579 broad.mit.edu 36 1 47173847 47173847 + Silent SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 47173847 47173847 CYP4A11 1 G G A 35 VAV3 10451 broad.mit.edu 36 1 108308902 108308902 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108308902 108308902 VAV3 1 C C G 27 SHE 126669 broad.mit.edu 36 1 152738320 152738320 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152738320 152738320 SHE 1 A A G 15 FLAD1 80308 broad.mit.edu 36 1 153227530 153227530 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153227530 153227530 FLAD1 1 C C A 17 CD55 1604 broad.mit.edu 36 1 205562361 205562361 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 205562361 205562361 CD55 1 C C A 24 OBSCN 84033 broad.mit.edu 36 1 226468736 226468736 + Silent SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 226468736 226468736 OBSCN 1 G G T 40 CYP26C1 340665 broad.mit.edu 36 10 94818155 94818156 + Missense_Mutation DNP GC GC AT novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 94818155 94818156 CYP26C1 10 GC GC AT 42 DCHS1 8642 broad.mit.edu 36 11 6603232 6603232 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6603232 6603232 DCHS1 11 G G T 44 METT5D1 196074 broad.mit.edu 36 11 28091605 28091605 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28091605 28091605 METT5D1 11 G G T 33 ARFGAP2 84364 broad.mit.edu 36 11 47153380 47153380 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 47153380 47153380 ARFGAP2 11 G G A 39 GDPD5 81544 broad.mit.edu 36 11 74831132 74831132 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74831132 74831132 GDPD5 11 C C T 23 MYO7A 4647 broad.mit.edu 36 11 76578081 76578081 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76578081 76578081 MYO7A 11 C C A 22 FLI1 2313 broad.mit.edu 36 11 128185915 128185915 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128185915 128185915 FLI1 11 A A G 6 NCAPD3 23310 broad.mit.edu 36 11 133595723 133595723 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133595723 133595723 NCAPD3 11 A A T 15 CD9 928 broad.mit.edu 36 12 6179991 6179991 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6179991 6179991 CD9 12 G G T 47 LPAR5 57121 broad.mit.edu 36 12 6600556 6600556 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6600556 6600556 LPAR5 12 G G T 40 ESPL1 9700 broad.mit.edu 36 12 51962339 51962339 + Silent SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 51962339 51962339 ESPL1 12 C C T 28 ITGA7 3679 broad.mit.edu 36 12 54378838 54378838 + Silent SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 54378838 54378838 ITGA7 12 G G A 39 GNPTAB 79158 broad.mit.edu 36 12 100679486 100679486 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100679486 100679486 GNPTAB 12 C C T 32 DRAM1 55332 broad.mit.edu 36 12 100839133 100839133 + Silent SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 100839133 100839133 DRAM1 12 C C A 22 ALG11 440138 broad.mit.edu 36 13 51491265 51491265 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51491265 51491265 ALG11 13 G G C 33 PCDH9 5101 broad.mit.edu 36 13 66697664 66697664 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66697664 66697664 PCDH9 13 G G T 48 RPGRIP1 57096 broad.mit.edu 36 14 20889180 20889180 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20889180 20889180 RPGRIP1 14 A A G 16 AKAP6 9472 broad.mit.edu 36 14 32361192 32361192 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32361192 32361192 AKAP6 14 A A C 3 SRP54 6729 broad.mit.edu 36 14 34561934 34561934 + Silent SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 34561934 34561934 SRP54 14 A A G 11 FUT8 2530 broad.mit.edu 36 14 65205925 65205925 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65205925 65205925 FUT8 14 C C T 32 TRIP11 9321 broad.mit.edu 36 14 91540959 91540959 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91540959 91540959 TRIP11 14 C C A 32 ADSSL1 122622 broad.mit.edu 36 14 104278509 104278509 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104278509 104278509 ADSSL1 14 A A G 11 PACS2 23241 broad.mit.edu 36 14 104885875 104885875 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104885875 104885875 PACS2 14 G G T 44 PLA2G4F 255189 broad.mit.edu 36 15 40230176 40230176 + Silent SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 40230176 40230176 PLA2G4F 15 G G C 47 ADCY9 115 broad.mit.edu 36 16 4104976 4104976 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4104976 4104976 ADCY9 16 C C A 17 MYH13 8735 broad.mit.edu 36 17 10164398 10164398 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10164398 10164398 MYH13 17 C C A 29 BLMH 642 broad.mit.edu 36 17 25636584 25636584 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 25636584 25636584 BLMH 17 C C G 20 FNDC8 54752 broad.mit.edu 36 17 30473028 30473028 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30473028 30473028 FNDC8 17 A A T 2 JMJD6 23210 broad.mit.edu 36 17 72234131 72234131 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 72234131 72234131 JMJD6 17 G G T 38 DNAH17 8632 broad.mit.edu 36 17 74034664 74034664 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74034664 74034664 DNAH17 17 C C G 30 USP36 57602 broad.mit.edu 36 17 74311298 74311298 + Silent SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 74311298 74311298 USP36 17 G G A 38 PCYT2 5833 broad.mit.edu 36 17 77457663 77457664 + Missense_Mutation DNP GG GG TT novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 77457663 77457664 PCYT2 17 GG GG TT 43 FN3KRP 79672 broad.mit.edu 36 17 78270216 78270216 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78270216 78270216 FN3KRP 17 T T A 55 CPLX4 339302 broad.mit.edu 36 18 55130981 55130981 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55130981 55130981 CPLX4 18 C C A 21 SALL3 27164 broad.mit.edu 36 18 74854204 74854204 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74854204 74854204 SALL3 18 C C A 26 MAST1 22983 broad.mit.edu 36 19 12810413 12810413 + Silent SNP T T C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 12810413 12810413 MAST1 19 T T C 64 CPAMD8 27151 broad.mit.edu 36 19 16969035 16969035 + Silent SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 16969035 16969035 CPAMD8 19 C C A 30 KIAA1683 80726 broad.mit.edu 36 19 18238290 18238290 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18238290 18238290 KIAA1683 19 A A G 16 KLK7 5650 broad.mit.edu 36 19 56172756 56172756 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56172756 56172756 KLK7 19 C C T 29 PRKCG 5582 broad.mit.edu 36 19 59086787 59086787 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59086787 59086787 PRKCG 19 G G A 45 ZNF581 51545 broad.mit.edu 36 19 60847886 60847886 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60847886 60847886 ZNF581 19 C C A 32 SCN9A 6335 broad.mit.edu 36 2 166802907 166802907 + Silent SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 166802907 166802907 SCN9A 2 A A G 8 CHRNA1 1134 broad.mit.edu 36 2 175326556 175326556 + Silent SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 175326556 175326556 CHRNA1 2 G G A 36 PMS1 5378 broad.mit.edu 36 2 190436884 190436884 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 190436884 190436884 PMS1 2 C C G 21 INO80D 54891 broad.mit.edu 36 2 206577423 206577423 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 206577423 206577423 INO80D 2 T T C 49 INO80D 54891 broad.mit.edu 36 2 206635892 206635892 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 206635892 206635892 INO80D 2 C C T 23 TRIP12 9320 broad.mit.edu 36 2 230391454 230391454 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 230391454 230391454 TRIP12 2 A A T 15 TRAF3IP1 26146 broad.mit.edu 36 2 238970910 238970910 + Silent SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 238970910 238970910 TRAF3IP1 2 C C T 25 SNED1 25992 broad.mit.edu 36 2 241637192 241637192 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241637192 241637192 SNED1 2 T T C 55 MTERFD2 130916 broad.mit.edu 36 2 241684145 241684145 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241684145 241684145 MTERFD2 2 C C G 29 CPXM1 56265 broad.mit.edu 36 20 2726886 2726886 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 2726886 2726886 CPXM1 20 G G A 46 TSHZ2 128553 broad.mit.edu 36 20 51305913 51305913 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51305913 51305913 TSHZ2 20 A A G 2 TAF4 6874 broad.mit.edu 36 20 60006625 60006625 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60006625 60006625 TAF4 20 C C T 32 TRPM2 7226 broad.mit.edu 36 21 44683403 44683403 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44683403 44683403 TRPM2 21 T T C 53 MKL1 57591 broad.mit.edu 36 22 39144836 39144836 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39144836 39144836 MKL1 22 G G C 34 MOBP 4336 broad.mit.edu 36 3 39518705 39518705 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39518705 39518705 MOBP 3 T T G 57 COL6A6 131873 broad.mit.edu 36 3 131764789 131764789 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131764789 131764789 COL6A6 3 C C A 29 EPHB3 2049 broad.mit.edu 36 3 185780928 185780928 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 185780928 185780928 EPHB3 3 G G C 46 LMLN 89782 broad.mit.edu 36 3 199171527 199171527 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 199171527 199171527 LMLN 3 G G T 47 ELMOD2 255520 broad.mit.edu 36 4 141666057 141666057 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 141666057 141666057 ELMOD2 4 T T A 56 RXFP3 51289 broad.mit.edu 36 5 33973156 33973156 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33973156 33973156 RXFP3 5 C C T 26 ZNF608 57507 broad.mit.edu 36 5 124107949 124107949 + Silent SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 124107949 124107949 ZNF608 5 C C T 30 FAM65B 9750 broad.mit.edu 36 6 24977332 24977332 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24977332 24977332 FAM65B 6 T T A 57 MAS1L 116511 broad.mit.edu 36 6 29562653 29562653 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29562653 29562653 MAS1L 6 C C T 26 GNL1 2794 broad.mit.edu 36 6 30621999 30621999 + Silent SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 30621999 30621999 GNL1 6 G G A 40 KLHL31 401265 broad.mit.edu 36 6 53626958 53626958 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 53626958 53626958 KLHL31 6 G G A 45 ABCB5 340273 broad.mit.edu 36 7 20651928 20651928 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20651928 20651928 ABCB5 7 G G A 41 PIK3CG 5294 broad.mit.edu 36 7 106300612 106300612 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 106300612 106300612 PIK3CG 7 T T A 60 C7orf60 154743 broad.mit.edu 36 7 112249203 112249203 + Silent SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 112249203 112249203 C7orf60 7 C C T 24 ARF5 381 broad.mit.edu 36 7 127017389 127017389 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 127017389 127017389 ARF5 7 G G T 41 OPN1SW 611 broad.mit.edu 36 7 128203015 128203015 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128203015 128203015 OPN1SW 7 A A C 8 SLC18A1 6570 broad.mit.edu 36 8 20082740 20082740 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20082740 20082740 SLC18A1 8 G G C 33 TMEM70 54968 broad.mit.edu 36 8 75056274 75056274 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75056274 75056274 TMEM70 8 C C T 17 COL22A1 169044 broad.mit.edu 36 8 139675519 139675519 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139675519 139675519 COL22A1 8 C C T 23 AK3 50808 broad.mit.edu 36 9 4712564 4712564 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4712564 4712564 AK3 9 C C G 29 FOXD4L3 286380 broad.mit.edu 36 9 70108671 70108671 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70108671 70108671 FOXD4L3 9 A A T 11 PRUNE2 158471 broad.mit.edu 36 9 78514606 78514606 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78514606 78514606 PRUNE2 9 C C A 25 MYOM3 127294 broad.mit.edu 36 1 24307664 24307665 + Frame_Shift_Ins INS - G - novel Unknown TCGA-24-2298-01 TCGA-24-2298-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 24307664 24307665 MYOM3 1 - G - 55