Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ECE1 1889 broad.mit.edu 36 1 21471847 21471847 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21471847 21471847 ECE1 1 C C T 26 MACF1 23499 broad.mit.edu 36 1 39626441 39626441 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39626441 39626441 MACF1 1 A A T 12 SLC6A9 6536 broad.mit.edu 36 1 44236171 44236171 + Silent SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 44236171 44236171 SLC6A9 1 G G A 46 C1orf175 374977 broad.mit.edu 36 1 54944762 54944762 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54944762 54944762 C1orf175 1 C C T 19 WDR78 79819 broad.mit.edu 36 1 67163048 67163048 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 67163048 67163048 WDR78 1 A A T 5 SARS 6301 broad.mit.edu 36 1 109580633 109580633 + Silent SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 109580633 109580633 SARS 1 G G A 39 ACP6 51205 broad.mit.edu 36 1 145593007 145593007 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145593007 145593007 ACP6 1 T T C 62 CA14 23632 broad.mit.edu 36 1 148502327 148502327 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148502327 148502327 CA14 1 A A C 1 INTS3 65123 broad.mit.edu 36 1 151991504 151991504 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 151991504 151991504 INTS3 1 C C T 29 RUSC1 23623 broad.mit.edu 36 1 153561519 153561519 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153561519 153561519 RUSC1 1 C C G 32 HKDC1 80201 broad.mit.edu 36 10 70695406 70695406 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70695406 70695406 HKDC1 10 C C G 19 TIAL1 7073 broad.mit.edu 36 10 121331469 121331469 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121331469 121331469 TIAL1 10 G G A 48 TACC2 10579 broad.mit.edu 36 10 123999132 123999132 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123999132 123999132 TACC2 10 T T C 55 CARS 833 broad.mit.edu 36 11 2979816 2979816 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2979816 2979816 CARS 11 A A C 9 NAV2 89797 broad.mit.edu 36 11 19927130 19927130 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19927130 19927130 NAV2 11 T T A 51 EEF1G 1937 broad.mit.edu 36 11 62083878 62083878 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62083878 62083878 EEF1G 11 G G T 47 NEU3 10825 broad.mit.edu 36 11 74395108 74395108 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74395108 74395108 NEU3 11 C C T 17 FAT3 120114 broad.mit.edu 36 11 92173680 92173680 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 92173680 92173680 FAT3 11 T T G 63 NPAT 4863 broad.mit.edu 36 11 107549693 107549693 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107549693 107549693 NPAT 11 G G C 48 OR8G2 26492 broad.mit.edu 36 11 123601219 123601219 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123601219 123601219 OR8G2 11 C C A 25 ALG10B 144245 broad.mit.edu 36 12 37000607 37000607 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37000607 37000607 ALG10B 12 G G A 46 KRT4 3851 broad.mit.edu 36 12 51487870 51487870 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 51487870 51487870 KRT4 12 C C A 29 DCTN2 10540 broad.mit.edu 36 12 56212815 56212815 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56212815 56212815 DCTN2 12 C C T 25 SBNO1 55206 broad.mit.edu 36 12 122355111 122355112 + Missense_Mutation DNP AA AA TT novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 122355111 122355112 SBNO1 12 AA AA TT 13 CCNA1 8900 broad.mit.edu 36 13 35913268 35913268 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35913268 35913268 CCNA1 13 T T G 55 LPAR6 10161 broad.mit.edu 36 13 47884286 47884286 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47884286 47884286 LPAR6 13 G G A 33 EBPL 84650 broad.mit.edu 36 13 49163537 49163538 + Missense_Mutation DNP CC CC AG novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 49163537 49163538 EBPL 13 CC CC AG 26 ZFYVE26 23503 broad.mit.edu 36 14 67319340 67319340 + Silent SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 67319340 67319340 ZFYVE26 14 G G T 39 MYO5A 4644 broad.mit.edu 36 15 50398718 50398718 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50398718 50398718 MYO5A 15 T T C 51 HERC1 8925 broad.mit.edu 36 15 61792814 61792814 + Silent SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 61792814 61792814 HERC1 15 A A G 11 AXIN1 8312 broad.mit.edu 36 16 283557 283557 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 283557 283557 AXIN1 16 C C T 28 NUBP1 4682 broad.mit.edu 36 16 10758121 10758121 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10758121 10758121 NUBP1 16 G G C 35 CTCF 10664 broad.mit.edu 36 16 66220846 66220846 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 66220846 66220846 CTCF 16 C C T 27 EDC4 23644 broad.mit.edu 36 16 66467492 66467492 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66467492 66467492 EDC4 16 G G A 33 HS3ST3A1 9955 broad.mit.edu 36 17 13340754 13340754 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13340754 13340754 HS3ST3A1 17 T T G 59 ZNF287 57336 broad.mit.edu 36 17 16396269 16396269 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16396269 16396269 ZNF287 17 G G A 48 MPRIP 23164 broad.mit.edu 36 17 17002561 17002561 + Silent SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 17002561 17002561 MPRIP 17 G G T 39 MPRIP 23164 broad.mit.edu 36 17 17002564 17002565 + Missense_Mutation DNP CC CC GG novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 17002564 17002565 MPRIP 17 CC CC GG 18 UBTF 7343 broad.mit.edu 36 17 39643263 39643263 + Silent SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39643263 39643263 UBTF 17 A A G 7 MYCBPAP 84073 broad.mit.edu 36 17 45951439 45951439 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45951439 45951439 MYCBPAP 17 G G C 40 SGSH 6448 broad.mit.edu 36 17 75799370 75799370 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75799370 75799370 SGSH 17 G G A 43 TJP3 27134 broad.mit.edu 36 19 3686866 3686866 + Splice_Site_SNP SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 3686866 3686866 TJP3 19 G G T 33 MUC16 94025 broad.mit.edu 36 19 8947617 8947617 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8947617 8947617 MUC16 19 G G T 41 ZNF560 147741 broad.mit.edu 36 19 9442068 9442068 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9442068 9442068 ZNF560 19 C C A 24 DNMT1 1786 broad.mit.edu 36 19 10126610 10126610 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10126610 10126610 DNMT1 19 T T C 58 KEAP1 9817 broad.mit.edu 36 19 10471575 10471575 + Silent SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 10471575 10471575 KEAP1 19 G G T 43 POU2F2 5452 broad.mit.edu 36 19 47291605 47291605 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47291605 47291605 POU2F2 19 G G A 39 ZNF135 7694 broad.mit.edu 36 19 63271204 63271204 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 63271204 63271204 ZNF135 19 C C T 27 C2orf63 130162 broad.mit.edu 36 2 55293345 55293345 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55293345 55293345 C2orf63 2 G G C 36 YSK4 80122 broad.mit.edu 36 2 135461854 135461854 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135461854 135461854 YSK4 2 C C A 18 TTN 7273 broad.mit.edu 36 2 179342825 179342825 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179342825 179342825 TTN 2 C C A 17 TTLL4 9654 broad.mit.edu 36 2 219322240 219322240 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 219322240 219322240 TTLL4 2 G G C 34 PPP1R7 5510 broad.mit.edu 36 2 241748516 241748516 + Silent SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 241748516 241748516 PPP1R7 2 T T C 57 TAF4 6874 broad.mit.edu 36 20 59984726 59984726 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59984726 59984726 TAF4 20 T T C 59 PRPF6 24148 broad.mit.edu 36 20 62103026 62103026 + Silent SNP T T A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 62103026 62103026 PRPF6 20 T T A 62 C21orf91 54149 broad.mit.edu 36 21 18091034 18091034 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18091034 18091034 C21orf91 21 G G C 48 ETS2 2114 broad.mit.edu 36 21 39108660 39108660 + Silent SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39108660 39108660 ETS2 21 G G A 33 UBASH3A 53347 broad.mit.edu 36 21 42736496 42736496 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42736496 42736496 UBASH3A 21 C C T 27 EDEM1 9695 broad.mit.edu 36 3 5224779 5224779 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5224779 5224779 EDEM1 3 T T G 59 MYRIP 25924 broad.mit.edu 36 3 40060605 40060605 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40060605 40060605 MYRIP 3 G G T 34 DNAH12 201625 broad.mit.edu 36 3 57484582 57484582 + Silent SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 57484582 57484582 DNAH12 3 A A G 4 LRIG1 26018 broad.mit.edu 36 3 66513795 66513795 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 66513795 66513795 LRIG1 3 G G T 42 LMOD3 56203 broad.mit.edu 36 3 69240939 69240939 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 69240939 69240939 LMOD3 3 C C T 19 FAM55C 91775 broad.mit.edu 36 3 103023042 103023042 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103023042 103023042 FAM55C 3 A A G 8 PIK3CA 5290 broad.mit.edu 36 3 180400347 180400347 + Silent SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 180400347 180400347 PIK3CA 3 A A G 4 TMEM44 93109 broad.mit.edu 36 3 195817598 195817598 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 195817598 195817598 TMEM44 3 C C A 32 SULT1E1 6783 broad.mit.edu 36 4 70748004 70748004 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 70748004 70748004 SULT1E1 4 C C T 18 TLL1 7092 broad.mit.edu 36 4 167197827 167197827 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 167197827 167197827 TLL1 4 C C A 25 GPBP1 65056 broad.mit.edu 36 5 56562771 56562771 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56562771 56562771 GPBP1 5 G G A 47 GPR98 84059 broad.mit.edu 36 5 90142094 90142094 + Silent SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 90142094 90142094 GPR98 5 A A G 3 PDLIM4 8572 broad.mit.edu 36 5 131634520 131634520 + Missense_Mutation SNP C C A rs62384133 Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131634520 131634520 PDLIM4 5 C C A 17 PCDHA1 56147 broad.mit.edu 36 5 140369490 140369490 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 140369490 140369490 PCDHA1 5 C C T 23 CLINT1 9685 broad.mit.edu 36 5 157165621 157165621 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157165621 157165621 CLINT1 5 G G A 40 IRF4 3662 broad.mit.edu 36 6 339886 339887 + Missense_Mutation DNP GA GA TC novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 339886 339887 IRF4 6 GA GA TC 33 EXOC2 55770 broad.mit.edu 36 6 517577 517577 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 517577 517577 EXOC2 6 C C A 28 MYLK4 340156 broad.mit.edu 36 6 2616580 2616580 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2616580 2616580 MYLK4 6 T T C 56 TXNDC5 81567 broad.mit.edu 36 6 7834806 7834806 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7834806 7834806 TXNDC5 6 C C G 17 SPDEF 25803 broad.mit.edu 36 6 34620121 34620121 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34620121 34620121 SPDEF 6 C C A 24 TFAP2D 83741 broad.mit.edu 36 6 50804977 50804977 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50804977 50804977 TFAP2D 6 G G C 47 TINAG 27283 broad.mit.edu 36 6 54322624 54322624 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54322624 54322624 TINAG 6 T T G 51 DGKB 1607 broad.mit.edu 36 7 14613634 14613634 + Silent SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 14613634 14613634 DGKB 7 T T C 49 TAF6 6878 broad.mit.edu 36 7 99549243 99549243 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99549243 99549243 TAF6 7 T T G 56 MUC17 140453 broad.mit.edu 36 7 100466962 100466962 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100466962 100466962 MUC17 7 C C G 30 SRPK2 6733 broad.mit.edu 36 7 104570849 104570849 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104570849 104570849 SRPK2 7 C C G 24 SSPO 23145 broad.mit.edu 36 7 149159224 149159225 + Missense_Mutation DNP GG GG TA novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 149159224 149159225 SSPO 7 GG GG TA 47 TUSC3 7991 broad.mit.edu 36 8 15632544 15632544 + Splice_Site_SNP SNP A A G novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 15632544 15632544 TUSC3 8 A A G 15 STC1 6781 broad.mit.edu 36 8 23758256 23758256 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23758256 23758256 STC1 8 A A T 12 SNTG1 54212 broad.mit.edu 36 8 51525826 51525826 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51525826 51525826 SNTG1 8 G G A 48 CSMD3 114788 broad.mit.edu 36 8 113488085 113488085 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 113488085 113488085 CSMD3 8 T T A 56 COLEC10 10584 broad.mit.edu 36 8 120187426 120187426 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120187426 120187426 COLEC10 8 G G C 41 COL14A1 7373 broad.mit.edu 36 8 121312914 121312914 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121312914 121312914 COL14A1 8 T T C 60 ZHX2 22882 broad.mit.edu 36 8 124034733 124034733 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124034733 124034733 ZHX2 8 G G C 42 PTK2 5747 broad.mit.edu 36 8 141840502 141840502 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 141840502 141840502 PTK2 8 G G A 40 CNTFR 1271 broad.mit.edu 36 9 34547627 34547627 + Silent SNP G G T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34547627 34547627 CNTFR 9 G G T 34 SUSD3 203328 broad.mit.edu 36 9 94877923 94877923 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94877923 94877923 SUSD3 9 C C A 18 DFNB31 25861 broad.mit.edu 36 9 116205413 116205413 + Silent SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 116205413 116205413 DFNB31 9 G G A 33 LAMC3 10319 broad.mit.edu 36 9 132944454 132944454 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132944454 132944454 LAMC3 9 C C A 18 C9orf171 389799 broad.mit.edu 36 9 134408211 134408211 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134408211 134408211 C9orf171 9 C C A 26 CAMSAP1 157922 broad.mit.edu 36 9 137853528 137853528 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137853528 137853528 CAMSAP1 9 G G A 46 FRMPD4 9758 broad.mit.edu 36 X 12646811 12646811 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 12646811 12646811 FRMPD4 23 C C T 21 RS1 6247 broad.mit.edu 36 X 18570134 18570134 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18570134 18570134 RS1 23 A A C 11 RLIM 51132 broad.mit.edu 36 X 73728373 73728373 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73728373 73728373 RLIM 23 G G A 45 NRK 203447 broad.mit.edu 36 X 105039944 105039944 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105039944 105039944 NRK 23 A A T 7 COL4A6 1288 broad.mit.edu 36 X 107290440 107290440 + Silent SNP C C T novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 107290440 107290440 COL4A6 23 C C T 25 OR52N2 390077 broad.mit.edu 36 11 5798297 5798332 + In_Frame_Del DEL CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT - CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 5798297 5798332 OR52N2 11 CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT - CCATGAGGAGGCCCTGCACCGGCCCATGTACTACTT 26 BRCA1 672 broad.mit.edu 36 17 38469440 38469440 + Frame_Shift_Del DEL C - C novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 38469440 38469440 BRCA1 17 C - C 30 PALLD 23022 broad.mit.edu 36 4 169669713 169669737 + Frame_Shift_Del DEL GGGTGGCCCCCAGAGCCAGCTGTGT - GGGTGGCCCCCAGAGCCAGCTGTGT novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 169669713 169669737 PALLD 4 GGGTGGCCCCCAGAGCCAGCTGTGT - GGGTGGCCCCCAGAGCCAGCTGTGT 35 C9orf72 203228 broad.mit.edu 36 9 27556898 27556918 + In_Frame_Del DEL TTTCGAAGGATTTCTCCATTT - TTTCGAAGGATTTCTCCATTT novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 27556898 27556918 C9orf72 9 TTTCGAAGGATTTCTCCATTT - TTTCGAAGGATTTCTCCATTT 52 TKTL1 8277 broad.mit.edu 36 X 153194190 153194202 + Frame_Shift_Del DEL AAATTAATTGAGA - AAATTAATTGAGA novel Unknown TCGA-24-2035-01 TCGA-24-2035-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 153194190 153194202 TKTL1 23 AAATTAATTGAGA - AAATTAATTGAGA 5