Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context EPHB2 2048 broad.mit.edu 36 1 23081500 23081500 + Silent SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 23081500 23081500 EPHB2 1 G G A 40 CSMD2 114784 broad.mit.edu 36 1 33849271 33849271 + Silent SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 33849271 33849271 CSMD2 1 G G A 38 PLEKHA6 22874 broad.mit.edu 36 1 202481417 202481417 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 202481417 202481417 PLEKHA6 1 C C T 22 ACTN2 88 broad.mit.edu 36 1 234987502 234987502 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 234987502 234987502 ACTN2 1 A A G 8 NEBL 10529 broad.mit.edu 36 10 21141816 21141816 + Silent SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 21141816 21141816 NEBL 10 G G A 40 KIAA0913 23053 broad.mit.edu 36 10 75230191 75230191 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75230191 75230191 KIAA0913 10 G G A 36 ZDHHC16 84287 broad.mit.edu 36 10 99202176 99202176 + Silent SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 99202176 99202176 ZDHHC16 10 C C T 31 OR52E2 119678 broad.mit.edu 36 11 5036540 5036540 + Silent SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 5036540 5036540 OR52E2 11 C C T 28 OR5L1 219437 broad.mit.edu 36 11 55335632 55335632 + Silent SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55335632 55335632 OR5L1 11 G G A 40 FTH1 2495 broad.mit.edu 36 11 61488897 61488897 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 61488897 61488897 FTH1 11 T T C 62 NCAPD3 23310 broad.mit.edu 36 11 133567979 133567979 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 133567979 133567979 NCAPD3 11 C C T 18 SLC4A8 9498 broad.mit.edu 36 12 50143749 50143749 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 50143749 50143749 SLC4A8 12 C C G 20 LRP1 4035 broad.mit.edu 36 12 55884553 55884553 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55884553 55884553 LRP1 12 A A G 2 NBEA 26960 broad.mit.edu 36 13 34583048 34583048 + Silent SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 34583048 34583048 NBEA 13 C C T 17 USP8 9101 broad.mit.edu 36 15 48544572 48544572 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48544572 48544572 USP8 15 C C T 19 MYH11 4629 broad.mit.edu 36 16 15751539 15751539 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15751539 15751539 MYH11 16 G G A 40 ANKS4B 257629 broad.mit.edu 36 16 21168707 21168707 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21168707 21168707 ANKS4B 16 A A T 7 ZNF267 10308 broad.mit.edu 36 16 31834990 31834990 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31834990 31834990 ZNF267 16 C C T 26 TP53 7157 broad.mit.edu 36 17 7519095 7519095 + Splice_Site_SNP SNP C C A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 7519095 7519095 TP53 17 C C A 18 AP2B1 163 broad.mit.edu 36 17 31001675 31001675 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31001675 31001675 AP2B1 17 C C G 24 SDK2 54549 broad.mit.edu 36 17 68899226 68899226 + Silent SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 68899226 68899226 SDK2 17 C C T 19 INSR 3643 broad.mit.edu 36 19 7103753 7103753 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 7103753 7103753 INSR 19 C C G 19 CD97 976 broad.mit.edu 36 19 14374441 14374441 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14374441 14374441 CD97 19 A A G 9 NLRP2 55655 broad.mit.edu 36 19 60204038 60204038 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60204038 60204038 NLRP2 19 C C A 22 COLEC11 78989 broad.mit.edu 36 2 3669376 3669376 + Silent SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3669376 3669376 COLEC11 2 C C T 31 VRK2 7444 broad.mit.edu 36 2 58129502 58129502 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58129502 58129502 VRK2 2 T T A 56 PSD4 23550 broad.mit.edu 36 2 113671627 113671627 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113671627 113671627 PSD4 2 G G A 40 BBS5 129880 broad.mit.edu 36 2 170044343 170044343 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 170044343 170044343 BBS5 2 G G T 41 LPIN3 64900 broad.mit.edu 36 20 39410818 39410818 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39410818 39410818 LPIN3 20 G G C 40 TMPRSS15 5651 broad.mit.edu 36 21 18607134 18607134 + Missense_Mutation SNP C C A rs34942696 Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18607134 18607134 TMPRSS15 21 C C A 24 SYNJ1 8867 broad.mit.edu 36 21 32994229 32994229 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 32994229 32994229 SYNJ1 21 A A G 4 BACE2 25825 broad.mit.edu 36 21 41531370 41531370 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41531370 41531370 BACE2 21 G G T 41 MCTP1 79772 broad.mit.edu 36 5 94072289 94072289 + Silent SNP G G C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 94072289 94072289 MCTP1 5 G G C 41 PRR3 80742 broad.mit.edu 36 6 30638222 30638222 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 30638222 30638222 PRR3 6 C C G 21 DEFB110 245913 broad.mit.edu 36 6 50097552 50097552 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 50097552 50097552 DEFB110 6 C C T 18 GSTA5 221357 broad.mit.edu 36 6 52804631 52804631 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52804631 52804631 GSTA5 6 C C T 32 KHDRBS2 202559 broad.mit.edu 36 6 62448834 62448834 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 62448834 62448834 KHDRBS2 6 C C A 32 CACNA2D1 781 broad.mit.edu 36 7 81552087 81552087 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 81552087 81552087 CACNA2D1 7 C C T 31 SLC26A3 1811 broad.mit.edu 36 7 107215046 107215046 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107215046 107215046 SLC26A3 7 A A C 4 REPIN1 29803 broad.mit.edu 36 7 149699714 149699714 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 149699714 149699714 REPIN1 7 G G A 37 MYOM2 9172 broad.mit.edu 36 8 1993181 1993181 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1993181 1993181 MYOM2 8 T T G 52 CNBD1 168975 broad.mit.edu 36 8 87968945 87968945 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87968945 87968945 CNBD1 8 G G C 35 TLE1 7088 broad.mit.edu 36 9 83390311 83390311 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 83390311 83390311 TLE1 9 A A T 6 ACE2 59272 broad.mit.edu 36 X 15503803 15503803 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15503803 15503803 ACE2 23 A A G 7 HEPH 9843 broad.mit.edu 36 X 65307207 65307207 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 65307207 65307207 HEPH 23 G G T 34 KIAA1210 57481 broad.mit.edu 36 X 118134644 118134644 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1564-01 TCGA-24-1564-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 118134644 118134644 KIAA1210 23 A A C 8