Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CSF2RA 1438 genome.wustl.edu 36 X 1379504 1379504 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 1379504 1379504 CSF2RA 23 G G T 45 IL3RA 3563 genome.wustl.edu 36 X 1431279 1431279 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1431279 1431279 IL3RA 23 C C A 31 TGM6 343641 genome.wustl.edu 36 20 2328980 2328980 + Silent SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 2328980 2328980 TGM6 20 G G T 43 PITRM1 10531 genome.wustl.edu 36 10 3198518 3198518 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 3198518 3198518 PITRM1 10 C C T 28 TAS1R1 80835 genome.wustl.edu 36 1 6553862 6553862 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6553862 6553862 TAS1R1 1 G G C 47 CAMTA1 23261 genome.wustl.edu 36 1 6807755 6807755 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6807755 6807755 CAMTA1 1 C C T 25 EMR1 2015 genome.wustl.edu 36 19 6870735 6870735 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6870735 6870735 EMR1 19 A A G 8 ARHGEF18 23370 genome.wustl.edu 36 19 7429469 7429469 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7429469 7429469 ARHGEF18 19 G G T 48 TP53 7157 genome.wustl.edu 36 17 7518990 7518990 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518990 7518990 TP53 17 A A G 12 ZNF177 7730 genome.wustl.edu 36 19 9353249 9353249 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9353249 9353249 ZNF177 19 C C G 17 MYH1 4619 genome.wustl.edu 36 17 10340336 10340336 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10340336 10340336 MYH1 17 G G A 39 METTL6 131965 genome.wustl.edu 36 3 15432407 15432407 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15432407 15432407 METTL6 3 T T A 50 TBC1D28 254272 genome.wustl.edu 36 17 18482408 18482408 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 18482408 18482408 TBC1D28 17 C C T 19 ZNF429 353088 genome.wustl.edu 36 19 21512311 21512311 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21512311 21512311 ZNF429 19 G G A 48 CABIN1 23523 genome.wustl.edu 36 22 22821950 22821950 + Silent SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 22821950 22821950 CABIN1 22 G G A 43 ZFX 7543 genome.wustl.edu 36 X 24136256 24136256 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24136256 24136256 ZFX 23 A A G 12 ZKSCAN2 342357 genome.wustl.edu 36 16 25163070 25163070 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 25163070 25163070 ZKSCAN2 16 C C T 32 C1orf172 126695 genome.wustl.edu 36 1 27150987 27150987 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27150987 27150987 C1orf172 1 T T C 55 EPHX2 2053 genome.wustl.edu 36 8 27425322 27425322 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27425322 27425322 EPHX2 8 G G C 34 UQCR10 29796 genome.wustl.edu 36 22 28493396 28493396 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 28493396 28493396 UQCR10 22 C C T 23 STARD13 90627 genome.wustl.edu 36 13 32637488 32637488 + Silent SNP T T A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32637488 32637488 STARD13 13 T T A 53 RASGRP1 10125 genome.wustl.edu 36 15 36591122 36591122 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36591122 36591122 RASGRP1 15 G G A 37 ANKRD30A 91074 genome.wustl.edu 36 10 37546763 37546763 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T G T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37546763 37546763 ANKRD30A 10 T T G 54 ADAMTS20 80070 genome.wustl.edu 36 12 42112378 42112378 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42112378 42112378 ADAMTS20 12 C C T 28 KDM6A 7403 genome.wustl.edu 36 X 44822650 44822650 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44822650 44822650 KDM6A 23 A A T 2 RPL10L 140801 genome.wustl.edu 36 14 46190488 46190488 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46190488 46190488 RPL10L 14 C C T 27 DMXL2 23312 genome.wustl.edu 36 15 49617139 49617139 + Silent SNP T T G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49617139 49617139 DMXL2 15 T T G 59 DDC 1644 genome.wustl.edu 36 7 50579101 50579101 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50579101 50579101 DDC 7 G G T 40 GSTA1 2938 genome.wustl.edu 36 6 52765729 52765729 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52765729 52765729 GSTA1 6 C C G 21 RAB27A 5873 genome.wustl.edu 36 15 53308192 53308192 + Silent SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53308192 53308192 RAB27A 15 A A G 3 SMC1A 8243 genome.wustl.edu 36 X 53449184 53449184 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53449184 53449184 SMC1A 23 C C T 27 COL21A1 81578 genome.wustl.edu 36 6 56143847 56143847 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56143847 56143847 COL21A1 6 C C T 29 BCAS3 54828 genome.wustl.edu 36 17 56321844 56321844 + Missense_Mutation SNP A G G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56321844 56321844 BCAS3 17 A G G 16 DST 667 genome.wustl.edu 36 6 56614797 56614797 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56614797 56614797 DST 6 A A G 16 SYCP2 10388 genome.wustl.edu 36 20 57874784 57874784 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 57874784 57874784 SYCP2 20 T T A 64 FAM111A 63901 genome.wustl.edu 36 11 58676814 58676814 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58676814 58676814 FAM111A 11 C C G 20 NLRP9 338321 genome.wustl.edu 36 19 60941532 60941532 + Silent SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60941532 60941532 NLRP9 19 C C T 23 C11orf66 220004 genome.wustl.edu 36 11 61011203 61011203 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61011203 61011203 C11orf66 11 G G C 35 SLC16A9 220963 genome.wustl.edu 36 10 61083893 61083893 + Silent SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61083893 61083893 SLC16A9 10 A A G 11 NLRP5 126206 genome.wustl.edu 36 19 61231095 61231095 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61231095 61231095 NLRP5 19 C C T 23 TAF6L 10629 genome.wustl.edu 36 11 62310385 62310385 + Silent SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 62310385 62310385 TAF6L 11 A A G 16 IGDCC3 9543 genome.wustl.edu 36 15 63409183 63409183 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63409183 63409183 IGDCC3 15 C C A 26 ZFYVE26 23503 genome.wustl.edu 36 14 67292496 67292496 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67292496 67292496 ZFYVE26 14 C C A 20 TMF1 7110 genome.wustl.edu 36 3 69165545 69165546 + Missense DNP TC TC GA novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 TC TC TC GA TC TC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 69165545 69165546 TMF1 3 TC TC GA 54 HKDC1 80201 genome.wustl.edu 36 10 70680337 70680337 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70680337 70680337 HKDC1 10 T T G 53 TRPA1 8989 genome.wustl.edu 36 8 73143827 73143827 + Silent SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73143827 73143827 TRPA1 8 A A G 16 IL8 3576 genome.wustl.edu 36 4 74826153 74826153 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74826153 74826153 IL8 4 T T A 56 COL12A1 1303 genome.wustl.edu 36 6 75949716 75949716 + Nonsense_Mutation SNP G G C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 75949716 75949716 COL12A1 6 G G C 45 GBE1 2632 genome.wustl.edu 36 3 81837424 81837424 + Silent SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 81837424 81837424 GBE1 3 G G A 48 C1orf52 148423 genome.wustl.edu 36 1 85497664 85497664 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 85497664 85497664 C1orf52 1 C C G 32 CNGB3 54714 genome.wustl.edu 36 8 87729222 87729222 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87729222 87729222 CNGB3 8 C C T 27 KLHL32 114792 genome.wustl.edu 36 6 97693779 97693779 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97693779 97693779 KLHL32 6 C C T 28 TBC1D2 55357 genome.wustl.edu 36 9 100005503 100005503 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100005503 100005503 TBC1D2 9 G G T 42 AHNAK2 113146 genome.wustl.edu 36 14 104487226 104487226 + Silent SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104487226 104487226 AHNAK2 14 C C A 23 AHNAK2 113146 genome.wustl.edu 36 14 104487231 104487231 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T C T C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104487231 104487231 AHNAK2 14 T T C 58 COL4A1 1282 genome.wustl.edu 36 13 109625612 109625612 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109625612 109625612 COL4A1 13 T T A 55 CUX2 23316 genome.wustl.edu 36 12 110230518 110230518 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110230518 110230518 CUX2 12 C G G 21 PHLDB2 90102 genome.wustl.edu 36 3 113086793 113086793 + Silent SNP A A T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 113086793 113086793 PHLDB2 3 A A T 7 NRAP 4892 genome.wustl.edu 36 10 115390036 115390036 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115390036 115390036 NRAP 10 G G T 36 RNF26 79102 genome.wustl.edu 36 11 118712206 118712206 + Silent SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 118712206 118712206 RNF26 11 G G A 33 HAS2 3037 genome.wustl.edu 36 8 122710319 122710319 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 122710319 122710319 HAS2 8 C C T 21 STAG2 10735 genome.wustl.edu 36 X 123011736 123011736 + Silent SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 123011736 123011736 STAG2 23 C C A 31 LOC653781 653781 genome.wustl.edu 36 2 131128973 131128973 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131128973 131128973 LOC653781 2 A A C 1 SV2A 9900 genome.wustl.edu 36 1 148147385 148147385 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148147385 148147385 SV2A 1 C C A 18 SV2A 9900 genome.wustl.edu 36 1 148147977 148147977 + Silent SNP T T G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 148147977 148147977 SV2A 1 T T G 55 MAGEA11 4110 genome.wustl.edu 36 X 148576685 148576685 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148576685 148576685 MAGEA11 23 G G T 35 ITLN1 55600 genome.wustl.edu 36 1 159118580 159118580 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159118580 159118580 ITLN1 1 A A T 15 GFM1 85476 genome.wustl.edu 36 3 159852601 159852601 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159852601 159852601 GFM1 3 A A G 12 COBLL1 22837 genome.wustl.edu 36 2 165267892 165267892 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165267892 165267892 COBLL1 2 C C A 22 QSOX1 5768 genome.wustl.edu 36 1 178432226 178432226 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178432226 178432226 QSOX1 1 G G A 42 KIAA1614 57710 genome.wustl.edu 36 1 179171458 179171458 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179171458 179171458 KIAA1614 1 C C T 17 ETV5 2119 genome.wustl.edu 36 3 187305791 187305791 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187305791 187305791 ETV5 3 T T G 61 COPS7B 64708 genome.wustl.edu 36 2 232369216 232369216 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 232369216 232369216 COPS7B 2 A A G 8 GIGYF2 26058 genome.wustl.edu 36 2 233369150 233369150 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 233369150 233369150 GIGYF2 2 C C A 17 ILKAP 80895 genome.wustl.edu 36 2 238755558 238755558 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 238755558 238755558 ILKAP 2 C C G 17 LOC643905 643905 genome.wustl.edu 36 2 240630920 240630920 + Silent SNP A A G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 240630920 240630920 LOC643905 2 A A G 12 USH1C 10083 genome.wustl.edu 36 11 17505139 17505139 + Missense_Mutation SNP C A A novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17505139 17505139 USH1C 11 C A A 24 PRSS36 146547 genome.wustl.edu 36 16 31067427 31067427 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1563-01 TCGA-24-1563-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31067427 31067427 PRSS36 16 C C G 30