Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context EIF3I 8668 broad.mit.edu 36 1 32460735 32460735 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32460735 32460735 EIF3I 1 C C G 24 ZNF518A 9849 broad.mit.edu 36 10 97906333 97906333 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97906333 97906333 ZNF518A 10 G G C 33 TLL2 7093 broad.mit.edu 36 10 98195864 98195864 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98195864 98195864 TLL2 10 T T G 58 C10orf137 26098 broad.mit.edu 36 10 127414447 127414447 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 127414447 127414447 C10orf137 10 C C A 32 USP35 57558 broad.mit.edu 36 11 77585054 77585054 + Silent SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 77585054 77585054 USP35 11 C C T 24 GAB2 9846 broad.mit.edu 36 11 77615374 77615374 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77615374 77615374 GAB2 11 G G T 36 FAT3 120114 broad.mit.edu 36 11 92070253 92070254 + Missense_Mutation DNP TC TC CA novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 92070253 92070254 FAT3 11 TC TC CA 62 AMOTL1 154810 broad.mit.edu 36 11 94173036 94173036 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94173036 94173036 AMOTL1 11 G G C 33 AASDHPPT 60496 broad.mit.edu 36 11 105453820 105453820 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105453820 105453820 AASDHPPT 11 A A G 3 SIK3 23387 broad.mit.edu 36 11 116239701 116239701 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 116239701 116239701 SIK3 11 G G A 38 AKAP11 11215 broad.mit.edu 36 13 41771737 41771737 + Silent SNP T T C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 41771737 41771737 AKAP11 13 T T C 53 HCN4 10021 broad.mit.edu 36 15 71403146 71403146 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71403146 71403146 HCN4 15 G G C 44 SNAI3 333929 broad.mit.edu 36 16 87275107 87275107 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87275107 87275107 SNAI3 16 A A G 11 TP53 7157 broad.mit.edu 36 17 7518264 7518264 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518264 7518264 TP53 17 G G A 39 KLHL14 57565 broad.mit.edu 36 18 28514460 28514460 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28514460 28514460 KLHL14 18 C C T 32 NETO1 81832 broad.mit.edu 36 18 68602040 68602040 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 T A T T Unknown Valid Somatic x x 454_PCR_WGA x Broad Missense_Mutation SNP 68602040 68602040 NETO1 18 T T A 55 EMR1 2015 broad.mit.edu 36 19 6888605 6888605 + Silent SNP C C A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 6888605 6888605 EMR1 19 C C A 22 C19orf53 28974 broad.mit.edu 36 19 13746312 13746312 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13746312 13746312 C19orf53 19 G G C 36 C19orf53 28974 broad.mit.edu 36 19 13749905 13749905 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13749905 13749905 C19orf53 19 G G A 40 ZFP112 7771 broad.mit.edu 36 19 49523493 49523493 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 49523493 49523493 ZFP112 19 T T C 62 FBXO46 23403 broad.mit.edu 36 19 50907058 50907058 + Silent SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50907058 50907058 FBXO46 19 C C T 25 CYTH2 9266 broad.mit.edu 36 19 53667472 53667472 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53667472 53667472 CYTH2 19 G G T 43 PAX8 7849 broad.mit.edu 36 2 113715597 113715597 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 113715597 113715597 PAX8 2 C C A 18 CSF2RB 1439 broad.mit.edu 36 22 35664095 35664095 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 G T G T Unknown Valid Germline x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 35664095 35664095 CSF2RB 22 G G T 48 LDOC1L 84247 broad.mit.edu 36 22 43272056 43272056 + Silent SNP T T C novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43272056 43272056 LDOC1L 22 T T C 55 ZCWPW2 152098 broad.mit.edu 36 3 28429761 28429761 + Silent SNP A A G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 28429761 28429761 ZCWPW2 3 A A G 5 WDR82 80335 broad.mit.edu 36 3 52270475 52270475 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52270475 52270475 WDR82 3 C C G 32 ADAMTS16 170690 broad.mit.edu 36 5 5371344 5371344 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5371344 5371344 ADAMTS16 5 C C T 31 FBXW11 23291 broad.mit.edu 36 5 171251159 171251159 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 171251159 171251159 FBXW11 5 G G A 39 CYP21A2 1589 broad.mit.edu 36 6 32114262 32114262 + Silent SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 32114262 32114262 CYP21A2 6 C C T 30 TRRAP 8295 broad.mit.edu 36 7 98391788 98391788 + Silent SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 98391788 98391788 TRRAP 7 C C T 31 MOGAT3 346606 broad.mit.edu 36 7 100628804 100628804 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100628804 100628804 MOGAT3 7 C C A 30 WDR91 29062 broad.mit.edu 36 7 134531481 134531481 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134531481 134531481 WDR91 7 C C G 30 MFHAS1 9258 broad.mit.edu 36 8 8787473 8787473 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8787473 8787473 MFHAS1 8 C C A 23 SPATC1 375686 broad.mit.edu 36 8 145167078 145167078 + Silent SNP C C T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 145167078 145167078 SPATC1 8 C C T 22 ZNF7 7553 broad.mit.edu 36 8 146038292 146038292 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 146038292 146038292 ZNF7 8 G G T 42 FAM120C 54954 broad.mit.edu 36 X 54123438 54123438 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54123438 54123438 FAM120C 23 T T A 56 ARMCX2 9823 broad.mit.edu 36 X 100798316 100798316 + Silent SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 100798316 100798316 ARMCX2 23 G G A 40 MAGEA11 4110 broad.mit.edu 36 X 148576548 148576548 + Silent SNP A A G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 148576548 148576548 MAGEA11 23 A A G 12 L1CAM 3897 broad.mit.edu 36 X 152789738 152789738 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152789738 152789738 L1CAM 23 G G A 46 UBL4B 164153 broad.mit.edu 36 1 110457186 110457186 + Frame_Shift_Del DEL G - G novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 110457186 110457186 UBL4B 1 G - G 35 NRXN2 9379 broad.mit.edu 36 11 64131861 64131862 + Frame_Shift_Ins INS - G - novel Unknown TCGA-24-1551-01 TCGA-24-1551-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 64131861 64131862 NRXN2 11 - G - 59