Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context IL32 9235 genome.wustl.edu 36 16 3059304 3059304 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3059304 3059304 IL32 16 G G C 41 ENSG00000180913 genome.wustl.edu 36 11 6106850 6106850 + Silent SNP A A T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6106850 6106850 ENSG00000180913 11 A A T 6 KIAA0232 9778 genome.wustl.edu 36 4 6913767 6913767 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6913767 6913767 KIAA0232 4 A A T 1 PTPRM 5797 genome.wustl.edu 36 18 7939198 7939198 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7939198 7939198 PTPRM 18 C C T 28 FAM134B 54463 genome.wustl.edu 36 5 16531974 16531974 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T T C T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16531974 16531974 FAM134B 5 T T C 62 C20orf26 26074 genome.wustl.edu 36 20 20217566 20217566 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20217566 20217566 C20orf26 20 G G A 41 ZNF208 7757 genome.wustl.edu 36 19 21946919 21946919 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21946919 21946919 ZNF208 19 A A G 6 SPATA6 54558 genome.wustl.edu 36 1 48593979 48593979 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48593979 48593979 SPATA6 1 G G A 39 KDM5C 8242 genome.wustl.edu 36 X 53247590 53247590 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53247590 53247590 KDM5C 23 G G A 41 DST 667 genome.wustl.edu 36 6 56437496 56437496 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 56437496 56437496 DST 6 T T A 61 CDH26 60437 genome.wustl.edu 36 20 58002852 58002852 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58002852 58002852 CDH26 20 C G G 24 PCDH20 64881 genome.wustl.edu 36 13 60884812 60884812 + Missense_Mutation SNP G A A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60884812 60884812 PCDH20 13 G A A 39 OPHN1 4983 genome.wustl.edu 36 X 67200534 67200534 + Missense_Mutation SNP G T T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67200534 67200534 OPHN1 23 G T T 44 PRDM14 63978 genome.wustl.edu 36 8 71141073 71141073 + Silent SNP C C A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 71141073 71141073 PRDM14 8 C C A 29 LOC100132353 genome.wustl.edu 36 1 72513279 72513279 + Nonsense_Mutation SNP G G T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 72513279 72513279 LOC100132353 1 G G T 41 PRKRIR 5612 genome.wustl.edu 36 11 75740173 75740173 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75740173 75740173 PRKRIR 11 G G A 39 LRRC50 123872 genome.wustl.edu 36 16 82745706 82745706 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82745706 82745706 LRRC50 16 G G C 41 LOC100130211 genome.wustl.edu 36 X 85302150 85302150 + Missense_Mutation SNP T G G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 85302150 85302150 LOC100130211 23 T G G 62 GRID1 2894 genome.wustl.edu 36 10 87479305 87479305 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87479305 87479305 GRID1 10 T T A 54 GAL3ST4 79690 genome.wustl.edu 36 7 99595895 99595895 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99595895 99595895 GAL3ST4 7 C C A 24 GRIN3A 116443 genome.wustl.edu 36 9 103472539 103472539 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103472539 103472539 GRIN3A 9 G G T 44 RIMS2 9699 genome.wustl.edu 36 8 104778634 104778634 + Silent SNP C C T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104778634 104778634 RIMS2 8 C C T 20 SNX19 399979 genome.wustl.edu 36 11 130290809 130290809 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130290809 130290809 SNX19 11 A A G 7 NTM 50863 genome.wustl.edu 36 11 131521404 131521404 + Silent SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 131521404 131521404 NTM 11 G G A 43 YSK4 80122 genome.wustl.edu 36 2 135472902 135472902 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135472902 135472902 YSK4 2 C C G 22 SLITRK2 84631 genome.wustl.edu 36 X 144712869 144712869 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144712869 144712869 SLITRK2 23 G G A 46 DRD5P2 genome.wustl.edu 36 1 147170059 147170059 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 147170059 147170059 DRD5P2 1 G G A 38 POGZ 23126 genome.wustl.edu 36 1 149644636 149644636 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149644636 149644636 POGZ 1 C C A 21 YEATS2 55689 genome.wustl.edu 36 3 184976435 184976435 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184976435 184976435 YEATS2 3 G G A 46 FAT1 2195 genome.wustl.edu 36 4 187865550 187865550 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187865550 187865550 FAT1 4 T T C 51 MASP1 5648 genome.wustl.edu 36 3 188436440 188436440 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 188436440 188436440 MASP1 3 G G A 37 FMOD 2331 genome.wustl.edu 36 1 201583696 201583696 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 201583696 201583696 FMOD 1 T T C 49 GNPAT 8443 genome.wustl.edu 36 1 229465158 229465159 + Frame_Shift_Del DEL CT CT - novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 CT CT CT - CT CT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 229465158 229465159 GNPAT 1 CT CT - 24 VAX1 11023 genome.wustl.edu 36 10 118885982 118885982 + Silent SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 118885982 118885982 VAX1 10 G G A 39 MUC5B 727897 genome.wustl.edu 36 11 1223834 1223834 + Missense_Mutation SNP A A G Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A G A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1223834 1223834 MUC5B 11 A A G 6 MYOD1 4654 genome.wustl.edu 36 11 17698019 17698019 + Silent SNP G T T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 17698019 17698019 MYOD1 11 G T T 39 OR51A7 119687 genome.wustl.edu 36 11 4885418 4885418 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4885418 4885418 OR51A7 11 G G A 48 IGHE genome.wustl.edu 36 14 105138472 105138472 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105138472 105138472 IGHE 14 A A T 15 TBX6 6911 genome.wustl.edu 36 16 30005602 30005602 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30005602 30005602 TBX6 16 C C A 30 EMR4P 326342 genome.wustl.edu 36 19 6941796 6941796 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6941796 6941796 EMR4P 19 A A G 9 ZAN 7455 genome.wustl.edu 36 7 100204256 100204256 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1549-01 TCGA-24-1549-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100204256 100204256 ZAN 7 A A T 3