Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ANXA7	310	hgsc.bcm.edu	36	10	74808687	74808687	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	74808687	74808687	ANXA7	10	G	G	A	45
ARHGAP25	9938	hgsc.bcm.edu	36	2	68906755	68906755	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68906755	68906755	ARHGAP25	2	G	G	T	33
CCDC93	54520	hgsc.bcm.edu	36	2	118419574	118419574	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	118419574	118419574	CCDC93	2	C	C	A	19
COL22A1	169044	hgsc.bcm.edu	36	8	139959730	139959730	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	139959730	139959730	COL22A1	8	C	C	T	17
DUOX2	50506	hgsc.bcm.edu	36	15	43186126	43186126	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43186126	43186126	DUOX2	15	G	G	A	33
EFCAB6	64800	hgsc.bcm.edu	36	22	42343060	42343061	+	Indel	Indel	G-	G-	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Indel	Indel	42343060	42343061	EFCAB6	22	G-	G-	T	48
F13A1	2162	hgsc.bcm.edu	36	6	6250670	6250670	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6250670	6250670	F13A1	6	G	G	A	39
F2	2147	hgsc.bcm.edu	36	11	46697948	46697948	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46697948	46697948	F2	11	A	A	T	14
FBXO28	23219	hgsc.bcm.edu	36	1	222384835	222384835	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	222384835	222384835	FBXO28	1	G	G	A	45
FKBP10	60681	hgsc.bcm.edu	36	17	37231516	37231516	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37231516	37231516	FKBP10	17	T	T	G	64
FZD7	8324	hgsc.bcm.edu	36	2	202608551	202608551	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	202608551	202608551	FZD7	2	C	C	-	27
HDAC6	10013	hgsc.bcm.edu	36	X	48563511	48563511	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48563511	48563511	HDAC6	23	C	C	A	30
KIAA0182	23199	hgsc.bcm.edu	36	16	84225055	84225055	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	84225055	84225055	KIAA0182	16	G	G	A	41
KIF14	9928	hgsc.bcm.edu	36	1	198837703	198837703	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	198837703	198837703	KIF14	1	C	C	T	19
LRRC8C	84230	hgsc.bcm.edu	36	1	89951416	89951416	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	89951416	89951416	LRRC8C	1	G	G	T	35
MAML1	9794	hgsc.bcm.edu	36	5	179133521	179133521	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	179133521	179133521	MAML1	5	C	C	A	23
MAP3K15	389840	hgsc.bcm.edu	36	X	19290851	19290851	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19290851	19290851	MAP3K15	23	T	T	C	55
MTMR3	8897	hgsc.bcm.edu	36	22	28746522	28746522	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	28746522	28746522	MTMR3	22	C	C	T	27
MVP	9961	hgsc.bcm.edu	36	16	29759024	29759024	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29759024	29759024	MVP	16	C	C	A	26
MYH3	4621	hgsc.bcm.edu	36	17	10476613	10476613	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10476613	10476613	MYH3	17	C	C	A	22
NLRP12	91662	hgsc.bcm.edu	36	19	59002700	59002700	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59002700	59002700	NLRP12	19	T	T	C	55
PHIP	55023	hgsc.bcm.edu	36	6	79711818	79711818	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	79711818	79711818	PHIP	6	T	T	C	64
PIK3R4	30849	hgsc.bcm.edu	36	3	131908665	131908665	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	131908665	131908665	PIK3R4	3	T	T	C	62
PKD1L1	168507	hgsc.bcm.edu	36	7	47819381	47819382	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	47819381	47819382	PKD1L1	7	AG	AG	-	15
SIM1	6492	hgsc.bcm.edu	36	6	100948242	100948242	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100948242	100948242	SIM1	6	C	C	T	31
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519128	7519128	TP53	17	C	A	A	25
TTC3	7267	hgsc.bcm.edu	36	21	37420263	37420263	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37420263	37420263	TTC3	21	C	C	T	27
ZFP112	7771	hgsc.bcm.edu	36	19	49523985	49523985	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49523985	49523985	ZFP112	19	T	T	C	56
ZNF462	58499	hgsc.bcm.edu	36	9	108726962	108726962	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1544-01	TCGA-24-1544-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	108726962	108726962	ZNF462	9	C	C	T	23