Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HRNR 388697 broad.mit.edu 36 1 150459981 150459981 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150459981 150459981 HRNR 1 C C T 21 LHX9 56956 broad.mit.edu 36 1 196153671 196153671 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 196153671 196153671 LHX9 1 G G T 42 PPP2R5A 5525 broad.mit.edu 36 1 210596633 210596633 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 C A C C Unknown Valid Somatic x x 454_PCR_WGA x Broad Missense_Mutation SNP 210596633 210596633 PPP2R5A 1 C C A 29 ZP4 57829 broad.mit.edu 36 1 236118301 236118301 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 236118301 236118301 ZP4 1 G G A 41 NKX2-3 159296 broad.mit.edu 36 10 101282907 101282907 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101282907 101282907 NKX2-3 10 C C T 18 MUC5B 727897 broad.mit.edu 36 11 1227452 1227452 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1227452 1227452 MUC5B 11 A A C 2 OR51F1 256892 broad.mit.edu 36 11 4747057 4747057 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4747057 4747057 OR51F1 11 T T C 52 OR8H3 390152 broad.mit.edu 36 11 55646913 55646913 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55646913 55646913 OR8H3 11 G G A 45 OR5AK2 390181 broad.mit.edu 36 11 56513363 56513363 + Silent SNP T T C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 56513363 56513363 OR5AK2 11 T T C 55 ANO2 57101 broad.mit.edu 36 12 5555330 5555330 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5555330 5555330 ANO2 12 T T C 60 ESYT1 23344 broad.mit.edu 36 12 54818532 54818532 + Silent SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54818532 54818532 ESYT1 12 G G A 34 TBC1D4 9882 broad.mit.edu 36 13 74784899 74784899 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 74784899 74784899 TBC1D4 13 A A C 12 TRPM1 4308 broad.mit.edu 36 15 29117636 29117636 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29117636 29117636 TRPM1 15 G G A 43 PLSCR3 57048 broad.mit.edu 36 17 7237407 7237407 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7237407 7237407 PLSCR3 17 G G A 38 TP53 7157 broad.mit.edu 36 17 7517852 7517852 + Nonsense_Mutation SNP C C A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 7517852 7517852 TP53 17 C C A 29 ICAM1 3383 broad.mit.edu 36 19 10256085 10256085 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 10256085 10256085 ICAM1 19 C C T 23 CPS1 1373 broad.mit.edu 36 2 211175180 211175180 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 211175180 211175180 CPS1 2 G G T 46 ISX 91464 broad.mit.edu 36 22 33793246 33793246 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33793246 33793246 ISX 22 G G T 43 EP300 2033 broad.mit.edu 36 22 39894458 39894458 + Nonsense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 39894458 39894458 EP300 22 C C T 27 RAD18 56852 broad.mit.edu 36 3 8980025 8980025 + Silent SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 8980025 8980025 RAD18 3 G G A 45 ADCY5 111 broad.mit.edu 36 3 124649298 124649298 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124649298 124649298 ADCY5 3 G G A 38 PCDHA4 56144 broad.mit.edu 36 5 140167813 140167813 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140167813 140167813 PCDHA4 5 C C T 31 HIST1H1E 3008 broad.mit.edu 36 6 26264769 26264769 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26264769 26264769 HIST1H1E 6 T T C 50 CTTNBP2 83992 broad.mit.edu 36 7 117219844 117219844 + Silent SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 117219844 117219844 CTTNBP2 7 G G A 39 PEBP4 157310 broad.mit.edu 36 8 22731160 22731160 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 22731160 22731160 PEBP4 8 C C T 32 ABCA1 19 broad.mit.edu 36 9 106634791 106634791 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 106634791 106634791 ABCA1 9 G G A 38 TTC16 158248 broad.mit.edu 36 9 129532747 129532747 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129532747 129532747 TTC16 9 G G A 35 SSPO 23145 broad.mit.edu 36 7 149134850 149134853 + Frame_Shift_Del DEL GATA - GATA novel Unknown TCGA-24-1471-01 TCGA-24-1471-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 149134850 149134853 SSPO 7 GATA - GATA 41