Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context XG 7499 genome.wustl.edu 36 X 2739383 2739383 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2739383 2739383 XG 23 T T C 51 CREB3L3 84699 genome.wustl.edu 36 19 4108240 4108240 + Silent SNP A A G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 4108240 4108240 CREB3L3 19 A A G 5 C3 718 genome.wustl.edu 36 19 6648521 6648521 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6648521 6648521 C3 19 G G T 44 TP53 7157 genome.wustl.edu 36 17 7518928 7518928 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518928 7518928 TP53 17 C C T 17 MUC16 94025 genome.wustl.edu 36 19 8929974 8929974 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8929974 8929974 MUC16 19 G G T 48 MUC16 94025 genome.wustl.edu 36 19 8933137 8933137 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8933137 8933137 MUC16 19 C C G 32 SLC6A6 6533 genome.wustl.edu 36 3 14498336 14498336 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14498336 14498336 SLC6A6 3 G G C 45 OTOR 56914 genome.wustl.edu 36 20 16677556 16677556 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16677556 16677556 OTOR 20 G G A 41 SLCO1C1 53919 genome.wustl.edu 36 12 20777247 20777247 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20777247 20777247 SLCO1C1 12 C C G 24 APOB 338 genome.wustl.edu 36 2 21088665 21088665 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21088665 21088665 APOB 2 A A T 11 LOC100130518 0 genome.wustl.edu 36 19 22290347 22290347 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22290347 22290347 LOC100130518 19 C C G 20 RPL23A 6147 genome.wustl.edu 36 17 24074728 24074728 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24074728 24074728 RPL23A 17 G G C 33 TNRC6A 27327 genome.wustl.edu 36 16 24712301 24712301 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24712301 24712301 TNRC6A 16 G G T 44 PI4K2B 55300 genome.wustl.edu 36 4 24879227 24879227 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24879227 24879227 PI4K2B 4 G G C 45 SEC14L3 266629 genome.wustl.edu 36 22 29188108 29188108 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29188108 29188108 SEC14L3 22 T T C 58 DOC2A 8448 genome.wustl.edu 36 16 29928083 29928083 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29928083 29928083 DOC2A 16 C C G 30 ARHGAP5 394 genome.wustl.edu 36 14 31631046 31631046 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31631046 31631046 ARHGAP5 14 G G A 44 NLRC4 58484 genome.wustl.edu 36 2 32328942 32328942 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32328942 32328942 NLRC4 2 C C A 17 GJB5 2709 genome.wustl.edu 36 1 34996257 34996257 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34996257 34996257 GJB5 1 G G A 45 TCP11 6954 genome.wustl.edu 36 6 35194074 35194074 + Missense_Mutation SNP T T G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35194074 35194074 TCP11 6 T T G 60 PAMR1 25891 genome.wustl.edu 36 11 35452801 35452801 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35452801 35452801 PAMR1 11 G G C 36 GORASP1 64689 genome.wustl.edu 36 3 39119205 39119205 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39119205 39119205 GORASP1 3 G G A 39 HEATR7B2 133558 genome.wustl.edu 36 5 41068913 41068913 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41068913 41068913 HEATR7B2 5 A A G 4 DYNC2LI1 51626 genome.wustl.edu 36 2 43864168 43864168 + Silent SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43864168 43864168 DYNC2LI1 2 G G A 33 ST3GAL3 6487 genome.wustl.edu 36 1 44063084 44063084 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44063084 44063084 ST3GAL3 1 C C G 22 CCR3 1232 genome.wustl.edu 36 3 46282600 46282600 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46282600 46282600 CCR3 3 T T C 62 LHCGR 3973 genome.wustl.edu 36 2 48769227 48769227 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 48769227 48769227 LHCGR 2 C C T 32 TRAIP 10293 genome.wustl.edu 36 3 49860597 49860597 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49860597 49860597 TRAIP 3 G G C 43 IQSEC2 23096 genome.wustl.edu 36 X 53300626 53300626 + Silent SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53300626 53300626 IQSEC2 23 C C T 19 OR6C75 390323 genome.wustl.edu 36 12 54045559 54045559 + Missense_Mutation SNP T T A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54045559 54045559 OR6C75 12 T T A 50 OR5D16 390144 genome.wustl.edu 36 11 55363647 55363647 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55363647 55363647 OR5D16 11 G G A 40 FLNB 2317 genome.wustl.edu 36 3 58086364 58086364 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58086364 58086364 FLNB 3 G G C 35 OR4D10 390197 genome.wustl.edu 36 11 59001705 59001705 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59001705 59001705 OR4D10 11 T T C 50 C14orf39 317761 genome.wustl.edu 36 14 59973399 59973399 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59973399 59973399 C14orf39 14 G G C 48 MS4A15 219995 genome.wustl.edu 36 11 60287962 60287962 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60287962 60287962 MS4A15 11 G G T 46 ZNF609 23060 genome.wustl.edu 36 15 62579042 62579042 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62579042 62579042 ZNF609 15 G G A 38 C15orf44 81556 genome.wustl.edu 36 15 63686706 63686706 + Silent SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63686706 63686706 C15orf44 15 G G A 39 LAS1L 81887 genome.wustl.edu 36 X 64660776 64660776 + Silent SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 64660776 64660776 LAS1L 23 C C G 27 PJA1 64219 genome.wustl.edu 36 X 68299717 68299717 + Silent SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 68299717 68299717 PJA1 23 A A C 3 ARFGEF1 10565 genome.wustl.edu 36 8 68341919 68341919 + Silent SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 68341919 68341919 ARFGEF1 8 T T C 56 HCN4 10021 genome.wustl.edu 36 15 71404829 71404829 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71404829 71404829 HCN4 15 C C T 18 GTF2IRD2B 389524 genome.wustl.edu 36 7 74202557 74202557 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74202557 74202557 GTF2IRD2B 7 A A G 1 ZMYND17 118490 genome.wustl.edu 36 10 74855969 74855969 + Silent SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 74855969 74855969 ZMYND17 10 C C T 23 CCDC146 57639 genome.wustl.edu 36 7 76741878 76741878 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76741878 76741878 CCDC146 7 A A C 1 GAB2 9846 genome.wustl.edu 36 11 77612115 77612115 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77612115 77612115 GAB2 11 C C T 29 ZNF292 23036 genome.wustl.edu 36 6 88028184 88028184 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88028184 88028184 ZNF292 6 G G T 48 TYR 7299 genome.wustl.edu 36 11 88564148 88564148 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88564148 88564148 TYR 11 A A C 12 FAM35A 54537 genome.wustl.edu 36 10 88920679 88920679 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88920679 88920679 FAM35A 10 C C G 25 SAMD9L 219285 genome.wustl.edu 36 7 92599291 92599291 + Silent SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 92599291 92599291 SAMD9L 7 C C T 21 ABCA4 24 genome.wustl.edu 36 1 94301362 94301362 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94301362 94301362 ABCA4 1 C C A 18 CDH17 1015 genome.wustl.edu 36 8 95241475 95241475 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95241475 95241475 CDH17 8 C C A 20 VWA3B 200403 genome.wustl.edu 36 2 98170896 98170896 + Silent SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 98170896 98170896 VWA3B 2 A A C 5 RGS22 26166 genome.wustl.edu 36 8 101186797 101186797 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101186797 101186797 RGS22 8 G G A 36 RELN 5649 genome.wustl.edu 36 7 103001849 103001849 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A C A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103001849 103001849 RELN 7 A A C 8 SLC26A3 1811 genome.wustl.edu 36 7 107201769 107201769 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107201769 107201769 SLC26A3 7 T T C 53 IFT81 28981 genome.wustl.edu 36 12 109065708 109065708 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109065708 109065708 IFT81 12 C C G 32 SLC16A4 9122 genome.wustl.edu 36 1 110725182 110725182 + Silent SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 110725182 110725182 SLC16A4 1 C C T 29 KCND3 3752 genome.wustl.edu 36 1 112131149 112131149 + Silent SNP A A G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 112131149 112131149 KCND3 1 A A G 1 CADM1 23705 genome.wustl.edu 36 11 114593903 114593903 + Missense_Mutation SNP A A T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114593903 114593903 CADM1 11 A A T 4 ENPP2 5168 genome.wustl.edu 36 8 120644337 120644337 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120644337 120644337 ENPP2 8 G G T 43 GRK5 2869 genome.wustl.edu 36 10 121083300 121083300 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121083300 121083300 GRK5 10 C C G 28 UBC 7316 genome.wustl.edu 36 12 123964117 123964117 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123964117 123964117 UBC 12 C C T 32 KALRN 8997 genome.wustl.edu 36 3 125895955 125895955 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 125895955 125895955 KALRN 3 C C G 26 LCT 3938 genome.wustl.edu 36 2 136286558 136286558 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 136286558 136286558 LCT 2 C C G 17 PIK3CB 5291 genome.wustl.edu 36 3 139906020 139906020 + Missense_Mutation SNP A A C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139906020 139906020 PIK3CB 3 A A C 5 PCDHB12 56124 genome.wustl.edu 36 5 140570694 140570694 + Silent SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 140570694 140570694 PCDHB12 5 C C T 22 LRP1B 53353 genome.wustl.edu 36 2 141174615 141174615 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141174615 141174615 LRP1B 2 C C T 17 SPANXN3 139067 genome.wustl.edu 36 X 142424335 142424335 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142424335 142424335 SPANXN3 23 G G C 33 ARHGAP30 257106 genome.wustl.edu 36 1 159288936 159288936 + Silent SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 159288936 159288936 ARHGAP30 1 G G A 45 USP21 27005 genome.wustl.edu 36 1 159397428 159397428 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159397428 159397428 USP21 1 C C T 26 MPZ 4359 genome.wustl.edu 36 1 159542580 159542580 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159542580 159542580 MPZ 1 G G C 34 ZNF354B 117608 genome.wustl.edu 36 5 178242706 178242706 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178242706 178242706 ZNF354B 5 G G A 46 NCF2 4688 genome.wustl.edu 36 1 181796000 181796001 + Missense DNP TC TC GT novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 TC TC TC GT TC TC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 181796000 181796001 NCF2 1 TC TC GT 62 PPFIA4 8497 genome.wustl.edu 36 1 201299692 201299692 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 201299692 201299692 PPFIA4 1 G G A 46 KMO 8564 genome.wustl.edu 36 1 239798427 239798427 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 239798427 239798427 KMO 1 C C A 20 AHCTF1 25909 genome.wustl.edu 36 1 245137665 245137665 + Missense_Mutation SNP C G G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245137665 245137665 AHCTF1 1 C G G 18 DNAH9 1770 genome.wustl.edu 36 17 11613331 11613331 + Silent SNP C T T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C T T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Silent SNP 11613331 11613331 DNAH9 17 C T T 19 ZNF320 162967 genome.wustl.edu 36 19 58078740 58078740 + Missense_Mutation SNP G A G novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58078740 58078740 ZNF320 19 G A G 47 NRXN2 9379 genome.wustl.edu 36 11 64146987 64146987 + Silent SNP G G T novel Unknown TCGA-24-1435-01 TCGA-24-1435-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 64146987 64146987 NRXN2 11 G G T 47 TRAF1 7185 genome.wustl.edu 36 9 122713453 122713453 + Missense_Mutation SNP C C T Unknown TCGA-24-1435-01 TCGA-24-1435-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122713453 122713453 TRAF1 9 C C T 19 COL24A1 255631 genome.wustl.edu 36 1 86270166 86270173 + Frame_Shift_Del DEL CCGGAGGA CCGGAGGA - Unknown TCGA-24-1435-01 TCGA-24-1435-10 CCGGAGGA CCGGAGGA CCGGAGGA - CCGGAGGA CCGGAGGA Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 86270166 86270173 COL24A1 1 CCGGAGGA CCGGAGGA - 22 VSIG2 23584 genome.wustl.edu 36 11 124125917 124125920 + Frame_Shift_Del DEL GTCA GTCA - Unknown TCGA-24-1435-01 TCGA-24-1435-10 GTCA GTCA GTCA - GTCA GTCA Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 124125917 124125920 VSIG2 11 GTCA GTCA - 40 AIM1 202 genome.wustl.edu 36 6 107075882 107075907 + Frame_Shift_Del DEL AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT - Unknown TCGA-24-1435-01 TCGA-24-1435-10 AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT - AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 107075882 107075907 AIM1 6 AGGCTAATCATATTGAAAGTGTTATT AGGCTAATCATATTGAAAGTGTTATT - 3 RPS6 6194 genome.wustl.edu 36 9 19369608 19369610 + In_Frame_Del DEL GAT GAT - Unknown TCGA-24-1435-01 TCGA-24-1435-10 GAT GAT GAT - GAT GAT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 19369608 19369610 RPS6 9 GAT GAT - 33