Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
AGGF1	55109	hgsc.bcm.edu	36	5	76385634	76385634	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76385634	76385634	AGGF1	5	G	G	T	42
BMPER	168667	hgsc.bcm.edu	36	7	33911791	33911791	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33911791	33911791	BMPER	7	A	A	C	14
DHTKD1	55526	hgsc.bcm.edu	36	10	12188281	12188281	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	12188281	12188281	DHTKD1	10	G	G	A	40
DMXL1	1657	hgsc.bcm.edu	36	5	118604052	118604052	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118604052	118604052	DMXL1	5	T	T	C	49
EDNRA	1909	hgsc.bcm.edu	36	4	148626405	148626405	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	148626405	148626405	EDNRA	4	G	G	A	40
FAM179A	165186	hgsc.bcm.edu	36	2	29103334	29103334	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	29103334	29103334	FAM179A	2	G	G	A	47
KDM2A	22992	hgsc.bcm.edu	36	11	66776851	66776851	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66776851	66776851	KDM2A	11	G	G	A	36
LEPREL1	55214	hgsc.bcm.edu	36	3	191320738	191320738	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	191320738	191320738	LEPREL1	3	G	G	C	45
MANEA	79694	hgsc.bcm.edu	36	6	96160717	96160717	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96160717	96160717	MANEA	6	G	G	T	41
MMP9	4318	hgsc.bcm.edu	36	20	44071077	44071077	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	44071077	44071077	MMP9	20	G	G	C	45
OPCML	4978	hgsc.bcm.edu	36	11	131811293	131811293	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	131811293	131811293	OPCML	11	C	C	T	17
PLA2G4E	123745	hgsc.bcm.edu	36	15	40089630	40089630	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	40089630	40089630	PLA2G4E	15	A	A	-	6
SFXN5	94097	hgsc.bcm.edu	36	2	73139227	73139227	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73139227	73139227	SFXN5	2	A	A	G	3
SSRP1	6749	hgsc.bcm.edu	36	11	56851820	56851820	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56851820	56851820	SSRP1	11	G	G	A	40
THAP4	51078	hgsc.bcm.edu	36	2	242194401	242194401	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	242194401	242194401	THAP4	2	C	C	T	19
TLR3	7098	hgsc.bcm.edu	36	4	187241239	187241239	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	187241239	187241239	TLR3	4	C	C	G	24
TP53	7157	hgsc.bcm.edu	36	17	7518996	7518996	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518996	7518996	TP53	17	T	T	C	51
UHRF1BP1L	23074	hgsc.bcm.edu	36	12	98977382	98977382	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	98977382	98977382	UHRF1BP1L	12	T	T	C	49
ZBTB4	57659	hgsc.bcm.edu	36	17	7310833	7310834	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-0968-01	TCGA-24-0968-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	7310833	7310834	ZBTB4	17	-	-	G	7