Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context HSD3B1 3283 broad.mit.edu 36 1 119858396 119858396 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 119858396 119858396 HSD3B1 1 C C A 22 ETV3L 440695 broad.mit.edu 36 1 155335910 155335910 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155335910 155335910 ETV3L 1 G G C 41 OR10J5 127385 broad.mit.edu 36 1 157772058 157772058 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157772058 157772058 OR10J5 1 G G A 39 FCGR3A 2214 broad.mit.edu 36 1 159781170 159781170 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 159781170 159781170 FCGR3A 1 C C T 26 CDH23 64072 broad.mit.edu 36 10 73232838 73232838 + Nonsense_Mutation SNP G G T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 73232838 73232838 CDH23 10 G G T 43 TTC17 55761 broad.mit.edu 36 11 43383975 43383975 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43383975 43383975 TTC17 11 C C T 21 CTSC 1075 broad.mit.edu 36 11 87710479 87710479 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87710479 87710479 CTSC 11 C C A 21 OR8G2 26492 broad.mit.edu 36 11 123600700 123600700 + Silent SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 123600700 123600700 OR8G2 11 A A G 7 KRT6C 286887 broad.mit.edu 36 12 51151470 51151470 + Splice_Site_SNP SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 51151470 51151470 KRT6C 12 A A G 14 TMCC3 57458 broad.mit.edu 36 12 93499754 93499754 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93499754 93499754 TMCC3 12 C C T 17 TMEM132D 121256 broad.mit.edu 36 12 128751112 128751112 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128751112 128751112 TMEM132D 12 T T G 60 REM2 161253 broad.mit.edu 36 14 22425178 22425178 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22425178 22425178 REM2 14 A A G 10 TJP1 7082 broad.mit.edu 36 15 27812622 27812622 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 27812622 27812622 TJP1 15 C C T 24 RTF1 23168 broad.mit.edu 36 15 39555255 39555255 + Silent SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39555255 39555255 RTF1 15 A A G 4 HYDIN 54768 broad.mit.edu 36 16 69465990 69465990 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69465990 69465990 HYDIN 16 T T C 64 TP53 7157 broad.mit.edu 36 17 7517878 7517878 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7517878 7517878 TP53 17 C C A 18 ADORA2B 136 broad.mit.edu 36 17 15819326 15819326 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15819326 15819326 ADORA2B 17 T T G 58 OTOP2 92736 broad.mit.edu 36 17 70438657 70438657 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70438657 70438657 OTOP2 17 A A T 3 CASKIN2 57513 broad.mit.edu 36 17 71012705 71012705 + Silent SNP G G A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 71012705 71012705 CASKIN2 17 G G A 40 B3GNTL1 146712 broad.mit.edu 36 17 78599885 78599885 + Silent SNP T T C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 78599885 78599885 B3GNTL1 17 T T C 60 MUC16 94025 broad.mit.edu 36 19 8946170 8946170 + Silent SNP T T C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 8946170 8946170 MUC16 19 T T C 55 FOXA3 3171 broad.mit.edu 36 19 51067895 51067895 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51067895 51067895 FOXA3 19 C C T 27 ZNF665 79788 broad.mit.edu 36 19 58361183 58361183 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58361183 58361183 ZNF665 19 T T A 54 SULT6B1 391365 broad.mit.edu 36 2 37269169 37269169 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37269169 37269169 SULT6B1 2 C C T 25 FAM82A1 151393 broad.mit.edu 36 2 38032579 38032579 + Silent SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 38032579 38032579 FAM82A1 2 C C A 26 C2orf29 55571 broad.mit.edu 36 2 101236156 101236156 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101236156 101236156 C2orf29 2 G G C 37 GTF3C3 9330 broad.mit.edu 36 2 197348106 197348106 + Missense_Mutation SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 197348106 197348106 GTF3C3 2 A A G 10 CDH22 64405 broad.mit.edu 36 20 44275062 44275062 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 44275062 44275062 CDH22 20 C C T 24 SALL4 57167 broad.mit.edu 36 20 49840821 49840821 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49840821 49840821 SALL4 20 G G C 41 RRP1B 23076 broad.mit.edu 36 21 43937631 43937632 + Missense_Mutation DNP TG TG AA novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 43937631 43937632 RRP1B 21 TG TG AA 59 GAS2L1 10634 broad.mit.edu 36 22 28038242 28038242 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28038242 28038242 GAS2L1 22 C C G 30 ATRIP 84126 broad.mit.edu 36 3 48481410 48481410 + Silent SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 48481410 48481410 ATRIP 3 C C T 30 CACNA1D 776 broad.mit.edu 36 3 53810348 53810348 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53810348 53810348 CACNA1D 3 A A C 4 CNTN3 5067 broad.mit.edu 36 3 74429864 74429864 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74429864 74429864 CNTN3 3 C C G 22 PCDHA7 56141 broad.mit.edu 36 5 140194240 140194240 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 140194240 140194240 PCDHA7 5 C C T 21 NOP16 51491 broad.mit.edu 36 5 175743843 175743843 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 175743843 175743843 NOP16 5 C C A 30 ZNF76 7629 broad.mit.edu 36 6 35370316 35370317 + Missense_Mutation DNP GC GC AA novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 35370316 35370317 ZNF76 6 GC GC AA 46 DDX43 55510 broad.mit.edu 36 6 74181944 74181944 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74181944 74181944 DDX43 6 G G C 41 COL12A1 1303 broad.mit.edu 36 6 75894742 75894742 + Silent SNP A A G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75894742 75894742 COL12A1 6 A A G 8 LTV1 84946 broad.mit.edu 36 6 144212980 144212980 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144212980 144212980 LTV1 6 C C A 24 ZNF479 90827 broad.mit.edu 36 7 57192565 57192565 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57192565 57192565 ZNF479 7 C C G 21 MUC17 140453 broad.mit.edu 36 7 100461809 100461809 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100461809 100461809 MUC17 7 G G C 36 FAM180A 389558 broad.mit.edu 36 7 135069406 135069406 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135069406 135069406 FAM180A 7 C C T 20 NPBWR1 2831 broad.mit.edu 36 8 54015983 54015983 + Silent SNP G G A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54015983 54015983 NPBWR1 8 G G A 45 WDYHV1 55093 broad.mit.edu 36 8 124517878 124517878 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124517878 124517878 WDYHV1 8 A A T 14 ANXA13 312 broad.mit.edu 36 8 124766071 124766071 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124766071 124766071 ANXA13 8 T T C 50 CDKL5 6792 broad.mit.edu 36 X 18574089 18574089 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18574089 18574089 CDKL5 23 C C A 18 SLC38A5 92745 broad.mit.edu 36 X 48203075 48203075 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 48203075 48203075 SLC38A5 23 G G C 33 CYSLTR1 10800 broad.mit.edu 36 X 77415025 77415025 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 77415025 77415025 CYSLTR1 23 G G C 35 TCEAL1 9338 broad.mit.edu 36 X 102771617 102771617 + Silent SNP G G A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 102771617 102771617 TCEAL1 23 G G A 39 IRS4 8471 broad.mit.edu 36 X 107866023 107866023 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 107866023 107866023 IRS4 23 C C A 32 HCFC1 3054 broad.mit.edu 36 X 152875620 152875620 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 152875620 152875620 HCFC1 23 T T A 64 C1orf146 388649 broad.mit.edu 36 1 92483776 92483806 + Frame_Shift_Del DEL TTCAGAAGATAAAACTGAATAGTGATTCAGT - TTCAGAAGATAAAACTGAATAGTGATTCAGT novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 92483776 92483806 C1orf146 1 TTCAGAAGATAAAACTGAATAGTGATTCAGT - TTCAGAAGATAAAACTGAATAGTGATTCAGT 56 HKDC1 80201 broad.mit.edu 36 10 70678237 70678247 + Frame_Shift_Del DEL TGTCCGCTTCC - TGTCCGCTTCC novel Unknown TCGA-23-2081-01 TCGA-23-2081-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 70678237 70678247 HKDC1 10 TGTCCGCTTCC - TGTCCGCTTCC 51