Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PTPRF 5792 broad.mit.edu 36 1 43858402 43858402 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43858402 43858402 PTPRF 1 G G C 37 ABL2 0 broad.mit.edu 36 1 177367172 177367172 + Silent SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 177367172 177367172 ABL2 1 G G A 34 CEP350 9857 broad.mit.edu 36 1 178346811 178346811 + Silent SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 178346811 178346811 CEP350 1 G G A 48 IGFN1 91156 broad.mit.edu 36 1 199449280 199449280 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 199449280 199449280 IGFN1 1 G G A 35 ANO9 338440 broad.mit.edu 36 11 423411 423411 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 423411 423411 ANO9 11 T T C 55 MRVI1 10335 broad.mit.edu 36 11 10587885 10587885 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10587885 10587885 MRVI1 11 G G A 38 CST6 1474 broad.mit.edu 36 11 65536897 65536897 + Silent SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 65536897 65536897 CST6 11 C C T 24 CASP4 837 broad.mit.edu 36 11 104325680 104325680 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104325680 104325680 CASP4 11 C C G 32 GRIA4 2893 broad.mit.edu 36 11 104988219 104988219 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104988219 104988219 GRIA4 11 T T C 54 CACNA1C 775 broad.mit.edu 36 12 2667995 2667995 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2667995 2667995 CACNA1C 12 T T C 58 C12orf40 283461 broad.mit.edu 36 12 38362848 38362848 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38362848 38362848 C12orf40 12 C C A 18 OBFC2B 79035 broad.mit.edu 36 12 54909127 54909127 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54909127 54909127 OBFC2B 12 C C A 30 PAN2 9924 broad.mit.edu 36 12 55003406 55003406 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55003406 55003406 PAN2 12 G G T 40 RIMBP2 23504 broad.mit.edu 36 12 129492506 129492506 + Silent SNP G G T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 129492506 129492506 RIMBP2 12 G G T 37 XPO4 64328 broad.mit.edu 36 13 20294414 20294414 + Missense_Mutation SNP G G C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20294414 20294414 XPO4 13 G G C 45 RB1 5925 broad.mit.edu 36 13 47839649 47839649 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 47839649 47839649 RB1 13 C C T 19 TTC5 91875 broad.mit.edu 36 14 19827741 19827741 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19827741 19827741 TTC5 14 T T A 49 SALL2 6297 broad.mit.edu 36 14 21061409 21061409 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 21061409 21061409 SALL2 14 C C A 30 PMM2 5373 broad.mit.edu 36 16 8803258 8803258 + Silent SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 8803258 8803258 PMM2 16 G G A 47 PARN 5073 broad.mit.edu 36 16 14438116 14438116 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14438116 14438116 PARN 16 T T A 62 GTF3C1 2975 broad.mit.edu 36 16 27408567 27408567 + Splice_Site_SNP SNP T T A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 27408567 27408567 GTF3C1 16 T T A 55 LPO 4025 broad.mit.edu 36 17 53684649 53684649 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53684649 53684649 LPO 17 G G T 33 DDX42 11325 broad.mit.edu 36 17 59239996 59239996 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59239996 59239996 DDX42 17 G G A 42 SRP68 6730 broad.mit.edu 36 17 71558199 71558199 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71558199 71558199 SRP68 17 C C T 29 RNF157 114804 broad.mit.edu 36 17 71663969 71663969 + Missense_Mutation SNP T T G novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71663969 71663969 RNF157 17 T T G 52 ABCA7 10347 broad.mit.edu 36 19 993357 993357 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 993357 993357 ABCA7 19 G G A 46 TUBB4 10382 broad.mit.edu 36 19 6446339 6446339 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6446339 6446339 TUBB4 19 G G A 38 CENPO 79172 broad.mit.edu 36 2 24876153 24876153 + Missense_Mutation SNP A A T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24876153 24876153 CENPO 2 A A T 3 MYLK2 85366 broad.mit.edu 36 20 29878309 29878309 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29878309 29878309 MYLK2 20 T T A 50 C20orf71 128861 broad.mit.edu 36 20 31269108 31269108 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31269108 31269108 C20orf71 20 C C A 17 KCNJ6 3763 broad.mit.edu 36 21 38008854 38008854 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38008854 38008854 KCNJ6 21 A A C 10 C3orf63 23272 broad.mit.edu 36 3 56642224 56642224 + Nonsense_Mutation SNP A A T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 56642224 56642224 C3orf63 3 A A T 13 OSBPL11 114885 broad.mit.edu 36 3 126754155 126754155 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 126754155 126754155 OSBPL11 3 A A C 1 PPP2R3A 5523 broad.mit.edu 36 3 137204717 137204717 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137204717 137204717 PPP2R3A 3 C C A 18 CC2D2A 57545 broad.mit.edu 36 4 15178202 15178202 + Missense_Mutation SNP A A C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15178202 15178202 CC2D2A 4 A A C 7 NEK1 4750 broad.mit.edu 36 4 170634947 170634947 + Missense_Mutation SNP T T A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 170634947 170634947 NEK1 4 T T A 52 UGT3A1 133688 broad.mit.edu 36 5 36001288 36001288 + Missense_Mutation SNP T T C novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36001288 36001288 UGT3A1 5 T T C 49 HEATR7B2 133558 broad.mit.edu 36 5 41074650 41074650 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41074650 41074650 HEATR7B2 5 C C G 32 KCNN2 3781 broad.mit.edu 36 5 113836687 113836687 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113836687 113836687 KCNN2 5 C C T 25 PCDHGA3 56112 broad.mit.edu 36 5 140705880 140705880 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140705880 140705880 PCDHGA3 5 C C T 27 HLA-E 3133 broad.mit.edu 36 6 30568322 30568322 + Silent SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 30568322 30568322 HLA-E 6 G G A 36 TUBE1 51175 broad.mit.edu 36 6 112503940 112503940 + Silent SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 112503940 112503940 TUBE1 6 C C T 28 CHD7 55636 broad.mit.edu 36 8 61898988 61898988 + Silent SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 61898988 61898988 CHD7 8 C C T 21 STMN2 11075 broad.mit.edu 36 8 80716197 80716197 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80716197 80716197 STMN2 8 G G A 46 TSPYL5 85453 broad.mit.edu 36 8 98358556 98358556 + Silent SNP C C G novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 98358556 98358556 TSPYL5 8 C C G 26 RIMS2 9699 broad.mit.edu 36 8 104997935 104997935 + Missense_Mutation SNP C C G novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104997935 104997935 RIMS2 8 C C G 24 RNF20 56254 broad.mit.edu 36 9 103362966 103362966 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103362966 103362966 RNF20 9 C C A 17 DFNB31 25861 broad.mit.edu 36 9 116204926 116204926 + Missense_Mutation SNP C C A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116204926 116204926 DFNB31 9 C C A 27 FAM47A 158724 broad.mit.edu 36 X 34060102 34060102 + Missense_Mutation SNP C C T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34060102 34060102 FAM47A 23 C C T 27 H2BFWT 158983 broad.mit.edu 36 X 103154861 103154861 + Missense_Mutation SNP G G T novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 103154861 103154861 H2BFWT 23 G G T 41 ARHGAP36 158763 broad.mit.edu 36 X 130046292 130046292 + Missense_Mutation SNP G G A novel Unknown TCGA-23-2079-01 TCGA-23-2079-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130046292 130046292 ARHGAP36 23 G G A 36