Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context C1orf158 93190 broad.mit.edu 36 1 12741948 12741948 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12741948 12741948 C1orf158 1 G G C 38 TMEM53 79639 broad.mit.edu 36 1 44893252 44893252 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 44893252 44893252 TMEM53 1 G G T 39 DNASE2B 58511 broad.mit.edu 36 1 84636855 84636855 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 84636855 84636855 DNASE2B 1 C C A 25 NTNG1 22854 broad.mit.edu 36 1 107780840 107780840 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107780840 107780840 NTNG1 1 A A C 8 LCE5A 254910 broad.mit.edu 36 1 150750732 150750732 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150750732 150750732 LCE5A 1 C C T 22 GON4L 54856 broad.mit.edu 36 1 154057945 154057945 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 154057945 154057945 GON4L 1 G G C 48 OR10J1 26476 broad.mit.edu 36 1 157676530 157676530 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157676530 157676530 OR10J1 1 A A T 8 LRRC52 440699 broad.mit.edu 36 1 163780187 163780187 + Silent SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 163780187 163780187 LRRC52 1 G G T 44 CACNA1S 779 broad.mit.edu 36 1 199327779 199327779 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 199327779 199327779 CACNA1S 1 T T G 56 TLR5 7100 broad.mit.edu 36 1 221351593 221351593 + Silent SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 221351593 221351593 TLR5 1 G G T 43 EPHX1 2052 broad.mit.edu 36 1 224086101 224086101 + Splice_Site_SNP SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 224086101 224086101 EPHX1 1 A A T 7 DIP2C 22982 broad.mit.edu 36 10 426258 426258 + Silent SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 426258 426258 DIP2C 10 G G C 43 CUBN 8029 broad.mit.edu 36 10 17185131 17185131 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17185131 17185131 CUBN 10 T T G 56 ZNF365 22891 broad.mit.edu 36 10 63806262 63806262 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63806262 63806262 ZNF365 10 T T C 57 JMJD1C 221037 broad.mit.edu 36 10 64614412 64614412 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64614412 64614412 JMJD1C 10 A A T 14 DOCK1 1793 broad.mit.edu 36 10 128687675 128687675 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 128687675 128687675 DOCK1 10 C C T 27 IGSF22 283284 broad.mit.edu 36 11 18696217 18696217 + Splice_Site_SNP SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 18696217 18696217 IGSF22 11 C C G 24 OR5AN1 390195 broad.mit.edu 36 11 58888817 58888817 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58888817 58888817 OR5AN1 11 A A T 16 AHNAK 79026 broad.mit.edu 36 11 62043091 62043091 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62043091 62043091 AHNAK 11 G G C 33 SLC22A10 387775 broad.mit.edu 36 11 62814454 62814454 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62814454 62814454 SLC22A10 11 T T A 54 BIRC3 330 broad.mit.edu 36 11 101712728 101712728 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101712728 101712728 BIRC3 11 C C G 17 KCNA5 3741 broad.mit.edu 36 12 5024204 5024204 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5024204 5024204 KCNA5 12 G G A 47 TSPAN19 144448 broad.mit.edu 36 12 83941283 83941283 + Silent SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 83941283 83941283 TSPAN19 12 A A G 5 TPTE2 93492 broad.mit.edu 36 13 18939412 18939412 + Silent SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 18939412 18939412 TPTE2 13 A A G 8 ATP7B 540 broad.mit.edu 36 13 51407060 51407060 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51407060 51407060 ATP7B 13 G G A 38 SLITRK5 26050 broad.mit.edu 36 13 87128419 87128419 + Silent SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 87128419 87128419 SLITRK5 13 A A G 15 FARP1 10160 broad.mit.edu 36 13 97841105 97841105 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97841105 97841105 FARP1 13 A A T 9 GMPR2 51292 broad.mit.edu 36 14 23777660 23777660 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23777660 23777660 GMPR2 14 G G C 36 SYNE2 23224 broad.mit.edu 36 14 63588192 63588192 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63588192 63588192 SYNE2 14 T T C 56 KIAA0247 9766 broad.mit.edu 36 14 69241113 69241113 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69241113 69241113 KIAA0247 14 C C A 32 EPB42 2038 broad.mit.edu 36 15 41287794 41287794 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41287794 41287794 EPB42 15 A A T 8 DUOX1 53905 broad.mit.edu 36 15 43230189 43230189 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43230189 43230189 DUOX1 15 C C T 32 C16orf91 283951 broad.mit.edu 36 16 1419278 1419278 + Silent SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1419278 1419278 C16orf91 16 C C A 30 TMC7 79905 broad.mit.edu 36 16 18964167 18964167 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 18964167 18964167 TMC7 16 T T A 55 RABEP2 79874 broad.mit.edu 36 16 28829932 28829932 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28829932 28829932 RABEP2 16 G G A 40 ABCC11 85320 broad.mit.edu 36 16 46787704 46787704 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 46787704 46787704 ABCC11 16 C C A 30 CCDC113 29070 broad.mit.edu 36 16 56841436 56841436 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56841436 56841436 CCDC113 16 C C T 30 CDH16 1014 broad.mit.edu 36 16 65504955 65504955 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65504955 65504955 CDH16 16 T T A 56 PRDM7 11105 broad.mit.edu 36 16 88654404 88654404 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 88654404 88654404 PRDM7 16 T T C 54 MYO15A 51168 broad.mit.edu 36 17 17995484 17995484 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17995484 17995484 MYO15A 17 T T A 56 KRT35 3886 broad.mit.edu 36 17 36886883 36886883 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36886883 36886883 KRT35 17 T T G 60 MBTD1 54799 broad.mit.edu 36 17 46627708 46627708 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46627708 46627708 MBTD1 17 C C A 30 USHBP1 83878 broad.mit.edu 36 19 17227269 17227269 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 17227269 17227269 USHBP1 19 C C T 24 MEGF8 1954 broad.mit.edu 36 19 47531122 47531122 + Silent SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 47531122 47531122 MEGF8 19 G G A 45 ZNF235 9310 broad.mit.edu 36 19 49483755 49483755 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49483755 49483755 ZNF235 19 A A T 3 FBXO46 23403 broad.mit.edu 36 19 50907085 50907085 + Silent SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50907085 50907085 FBXO46 19 G G A 45 PGLYRP1 8993 broad.mit.edu 36 19 51214337 51214337 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51214337 51214337 PGLYRP1 19 C C T 29 HRC 3270 broad.mit.edu 36 19 54349106 54349106 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54349106 54349106 HRC 19 T T C 54 CACNG7 59284 broad.mit.edu 36 19 59137263 59137263 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59137263 59137263 CACNG7 19 C C T 23 LILRA3 11026 broad.mit.edu 36 19 59495393 59495393 + Silent SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 59495393 59495393 LILRA3 19 G G T 42 RDH13 112724 broad.mit.edu 36 19 60248389 60248389 + Nonsense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 60248389 60248389 RDH13 19 G G C 36 LPIN1 23175 broad.mit.edu 36 2 11862055 11862055 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11862055 11862055 LPIN1 2 A A G 7 CD8A 925 broad.mit.edu 36 2 86871055 86871055 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 86871055 86871055 CD8A 2 C C T 31 ARHGAP15 55843 broad.mit.edu 36 2 143909649 143909649 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 143909649 143909649 ARHGAP15 2 G G T 36 TTN 7273 broad.mit.edu 36 2 179136181 179136181 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179136181 179136181 TTN 2 A A G 16 SGOL2 151246 broad.mit.edu 36 2 201146632 201146632 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201146632 201146632 SGOL2 2 G G T 36 TNS1 7145 broad.mit.edu 36 2 218386664 218386664 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 218386664 218386664 TNS1 2 T T C 55 UGT1A8 54576 broad.mit.edu 36 2 234191325 234191325 + Nonsense_Mutation SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 234191325 234191325 UGT1A8 2 C C G 29 RIN2 54453 broad.mit.edu 36 20 19818273 19818273 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 19818273 19818273 RIN2 20 G G T 39 FOXA2 3170 broad.mit.edu 36 20 22511750 22511750 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22511750 22511750 FOXA2 20 T T G 62 NDUFV3 4731 broad.mit.edu 36 21 43202198 43202198 + Nonstop_Mutation SNP T T G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonstop_Mutation SNP 43202198 43202198 NDUFV3 21 T T G 55 RFTN1 23180 broad.mit.edu 36 3 16333734 16333734 + Nonsense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 16333734 16333734 RFTN1 3 G G A 38 SCN11A 11280 broad.mit.edu 36 3 38916410 38916411 + Missense_Mutation DNP TG TG AT novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 38916410 38916411 SCN11A 3 TG TG AT 51 OR5H2 79310 broad.mit.edu 36 3 99484483 99484483 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99484483 99484483 OR5H2 3 G G A 41 MORC1 27136 broad.mit.edu 36 3 110305385 110305385 + Splice_Site_SNP SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 110305385 110305385 MORC1 3 C C A 18 SLCO2A1 6578 broad.mit.edu 36 3 135137337 135137337 + Silent SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 135137337 135137337 SLCO2A1 3 G G C 35 P2RY1 5028 broad.mit.edu 36 3 154036300 154036300 + Silent SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 154036300 154036300 P2RY1 3 G G A 39 MFN1 55669 broad.mit.edu 36 3 180549437 180549437 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 180549437 180549437 MFN1 3 T T A 64 EHHADH 1962 broad.mit.edu 36 3 186393440 186393440 + Silent SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 186393440 186393440 EHHADH 3 C C G 21 MASP1 5648 broad.mit.edu 36 3 188457170 188457170 + Silent SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 188457170 188457170 MASP1 3 C C A 25 BOD1L 259282 broad.mit.edu 36 4 13212791 13212791 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13212791 13212791 BOD1L 4 T T C 61 ZCCHC4 29063 broad.mit.edu 36 4 24944072 24944072 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24944072 24944072 ZCCHC4 4 A A C 5 ARAP2 116984 broad.mit.edu 36 4 35906815 35906816 + Missense_Mutation DNP CC CC AT novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 35906815 35906816 ARAP2 4 CC CC AT 30 ARAP2 116984 broad.mit.edu 36 4 35907369 35907369 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 35907369 35907369 ARAP2 4 C C T 25 NHEDC1 150159 broad.mit.edu 36 4 104089882 104089882 + Silent SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 104089882 104089882 NHEDC1 4 A A G 11 DKK2 27123 broad.mit.edu 36 4 108066444 108066444 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108066444 108066444 DKK2 4 G G C 39 FGA 2243 broad.mit.edu 36 4 155725231 155725231 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 155725231 155725231 FGA 4 A A T 7 FSTL5 56884 broad.mit.edu 36 4 162621631 162621631 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 162621631 162621631 FSTL5 4 T T A 56 TARS 6897 broad.mit.edu 36 5 33481256 33481256 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 33481256 33481256 TARS 5 G G A 35 C7 730 broad.mit.edu 36 5 41000604 41000604 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41000604 41000604 C7 5 A A C 9 RREB1 6239 broad.mit.edu 36 6 7185714 7185714 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7185714 7185714 RREB1 6 A A G 14 TRIM10 10107 broad.mit.edu 36 6 30229753 30229753 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30229753 30229753 TRIM10 6 C C T 31 VARS2 57176 broad.mit.edu 36 6 30998935 30998935 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30998935 30998935 VARS2 6 G G T 38 TFEB 7942 broad.mit.edu 36 6 41763652 41763652 + Silent SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 41763652 41763652 TFEB 6 C C G 23 BAI3 577 broad.mit.edu 36 6 70127958 70127958 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70127958 70127958 BAI3 6 C C A 21 PTPRK 5796 broad.mit.edu 36 6 128339861 128339861 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128339861 128339861 PTPRK 6 G G T 48 UTRN 7402 broad.mit.edu 36 6 144814287 144814287 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144814287 144814287 UTRN 6 A A G 12 GPER 2852 broad.mit.edu 36 7 1098327 1098327 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1098327 1098327 GPER 7 T T A 62 CDK13 8621 broad.mit.edu 36 7 40094368 40094368 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40094368 40094368 CDK13 7 G G T 43 MUC17 140453 broad.mit.edu 36 7 100473368 100473368 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100473368 100473368 MUC17 7 C C A 32 ZNF777 27153 broad.mit.edu 36 7 148760491 148760491 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148760491 148760491 ZNF777 7 C C A 25 MLL3 58508 broad.mit.edu 36 7 151509577 151509577 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151509577 151509577 MLL3 7 G G C 43 MYOM2 9172 broad.mit.edu 36 8 2076203 2076203 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2076203 2076203 MYOM2 8 C C A 18 PTK2B 2185 broad.mit.edu 36 8 27359323 27359323 + Silent SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 27359323 27359323 PTK2B 8 G G T 42 KCNU1 157855 broad.mit.edu 36 8 36811520 36811520 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36811520 36811520 KCNU1 8 C C T 28 GPR124 25960 broad.mit.edu 36 8 37816892 37816892 + Silent SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37816892 37816892 GPR124 8 C C G 22 TGS1 96764 broad.mit.edu 36 8 56886027 56886027 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56886027 56886027 TGS1 8 C C G 26 MOS 4342 broad.mit.edu 36 8 57188055 57188055 + Nonstop_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Nonstop_Mutation SNP 57188055 57188055 MOS 8 T T A 58 LRRC6 23639 broad.mit.edu 36 8 133706813 133706813 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133706813 133706813 LRRC6 8 G G T 48 RFX3 5991 broad.mit.edu 36 9 3320481 3320481 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3320481 3320481 RFX3 9 C C T 17 DDX58 23586 broad.mit.edu 36 9 32477984 32477984 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32477984 32477984 DDX58 9 G G C 33 SMU1 55234 broad.mit.edu 36 9 33066580 33066580 + Splice_Site_SNP SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 33066580 33066580 SMU1 9 C C T 20 ANKS6 203286 broad.mit.edu 36 9 100570248 100570248 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100570248 100570248 ANKS6 9 G G C 46 NR6A1 2649 broad.mit.edu 36 9 126356629 126356629 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 126356629 126356629 NR6A1 9 T T A 51 MAPKAP1 79109 broad.mit.edu 36 9 127474433 127474433 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127474433 127474433 MAPKAP1 9 C C G 32 MXRA5 25878 broad.mit.edu 36 X 3251097 3251097 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3251097 3251097 MXRA5 23 G G C 44 FRMPD4 9758 broad.mit.edu 36 X 12645760 12645760 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12645760 12645760 FRMPD4 23 C C A 21 LOC340602 0 broad.mit.edu 36 X 51168089 51168089 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51168089 51168089 LOC340602 23 C C T 17 ALAS2 212 broad.mit.edu 36 X 55058878 55058878 + Silent SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 55058878 55058878 ALAS2 23 C C T 20 CHM 1121 broad.mit.edu 36 X 85123432 85123432 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 85123432 85123432 CHM 23 A A T 3 PNMA5 114824 broad.mit.edu 36 X 151910376 151910376 + Silent SNP T T C novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 151910376 151910376 PNMA5 23 T T C 56 TP53 7157 broad.mit.edu 36 17 7519128 7519128 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7519128 7519128 TP53 17 C C T 25 PRR11 55771 broad.mit.edu 36 17 54617249 54617265 + Frame_Shift_Del DEL TCCTGGAACTTCAATTT - TCCTGGAACTTCAATTT novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 54617249 54617265 PRR11 17 TCCTGGAACTTCAATTT - TCCTGGAACTTCAATTT 50 MRPL4 51073 broad.mit.edu 36 19 10231467 10231473 + Frame_Shift_Del DEL CGGCCAC - CGGCCAC novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 10231467 10231473 MRPL4 19 CGGCCAC - CGGCCAC 27 CCDC9 26093 broad.mit.edu 36 19 52466411 52466425 + In_Frame_Del DEL ACGAGGGGGAAGAGA - ACGAGGGGGAAGAGA novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 52466411 52466425 CCDC9 19 ACGAGGGGGAAGAGA - ACGAGGGGGAAGAGA 10 CCDC158 339965 broad.mit.edu 36 4 77495492 77495507 + Splice_Site_Del DEL GCAACCCACCTTATTT - GCAACCCACCTTATTT novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 77495492 77495507 CCDC158 4 GCAACCCACCTTATTT - GCAACCCACCTTATTT 34 CA1 759 broad.mit.edu 36 8 86433099 86433099 + Frame_Shift_Del DEL A - A novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 86433099 86433099 CA1 8 A - A 9 FAM166B 730112 broad.mit.edu 36 9 35552438 35552439 + Frame_Shift_Ins INS - G - novel Unknown TCGA-23-1110-01 TCGA-23-1110-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 35552438 35552439 FAM166B 9 - G - 59