Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RNF207 388591 broad.mit.edu 36 1 6193033 6193033 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6193033 6193033 RNF207 1 G G T 46 L1TD1 54596 broad.mit.edu 36 1 62448356 62448356 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62448356 62448356 L1TD1 1 A A G 9 CLCA4 22802 broad.mit.edu 36 1 86804090 86804090 + Silent SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 86804090 86804090 CLCA4 1 C C T 19 CCDC76 54482 broad.mit.edu 36 1 100386036 100386036 + Splice_Site_SNP SNP A A C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 100386036 100386036 CCDC76 1 A A C 7 HIST2H2BE 8349 broad.mit.edu 36 1 148124459 148124459 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148124459 148124459 HIST2H2BE 1 A A G 10 SCAMP3 10067 broad.mit.edu 36 1 153494040 153494040 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 153494040 153494040 SCAMP3 1 C C T 27 OR5D16 390144 broad.mit.edu 36 11 55363156 55363156 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 55363156 55363156 OR5D16 11 C C T 27 ANO1 55107 broad.mit.edu 36 11 69649920 69649920 + Silent SNP A A T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 69649920 69649920 ANO1 11 A A T 12 SLC37A2 219855 broad.mit.edu 36 11 124459931 124459931 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124459931 124459931 SLC37A2 11 A A G 12 NTM 50863 broad.mit.edu 36 11 131521429 131521429 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 131521429 131521429 NTM 11 C C T 23 FAM113B 91523 broad.mit.edu 36 12 45916107 45916107 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45916107 45916107 FAM113B 12 C C T 23 BRCA2 675 broad.mit.edu 36 13 31810553 31810553 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31810553 31810553 BRCA2 13 C C T 19 SEC23A 10484 broad.mit.edu 36 14 38635059 38635059 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38635059 38635059 SEC23A 14 C C A 21 DLST 1743 broad.mit.edu 36 14 74437622 74437622 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 74437622 74437622 DLST 14 A A G 2 EVL 51466 broad.mit.edu 36 14 99664688 99664688 + Silent SNP A A C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 99664688 99664688 EVL 14 A A C 6 IGDCC3 9543 broad.mit.edu 36 15 63411438 63411438 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63411438 63411438 IGDCC3 15 T T A 51 BLM 641 broad.mit.edu 36 15 89113754 89113754 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 89113754 89113754 BLM 15 C C T 19 ZNF434 54925 broad.mit.edu 36 16 3374789 3374789 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3374789 3374789 ZNF434 16 G G A 44 CLEC18B 497190 broad.mit.edu 36 16 73005011 73005011 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73005011 73005011 CLEC18B 16 G G A 38 TP53 7157 broad.mit.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 Unknown TCGA-23-1030-01 TCGA-23-1030-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 7519131 7519131 TP53 17 C C T 27 RSAD1 55316 broad.mit.edu 36 17 45915745 45915745 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45915745 45915745 RSAD1 17 G G A 39 MAP2K2 5605 broad.mit.edu 36 19 4068441 4068441 + Silent SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 4068441 4068441 MAP2K2 19 G G A 35 NAT8B 51471 broad.mit.edu 36 2 73781447 73781447 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73781447 73781447 NAT8B 2 G G A 42 C20orf117 140710 broad.mit.edu 36 20 34858719 34858719 + Silent SNP A A G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34858719 34858719 C20orf117 20 A A G 5 VGLL4 9686 broad.mit.edu 36 3 11618368 11618368 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 11618368 11618368 VGLL4 3 C C A 31 C3orf39 84892 broad.mit.edu 36 3 43096740 43096740 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43096740 43096740 C3orf39 3 C C T 29 FLNB 2317 broad.mit.edu 36 3 58072963 58072963 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 58072963 58072963 FLNB 3 G G C 42 TMPRSS7 344805 broad.mit.edu 36 3 113278420 113278420 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 113278420 113278420 TMPRSS7 3 G G C 33 UROC1 131669 broad.mit.edu 36 3 127702316 127702316 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 127702316 127702316 UROC1 3 C C T 23 SLC10A4 201780 broad.mit.edu 36 4 48180902 48180903 + Missense_Mutation DNP GG GG AC novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 48180902 48180903 SLC10A4 4 GG GG AC 47 AMBN 258 broad.mit.edu 36 4 71506678 71506678 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71506678 71506678 AMBN 4 C C T 23 MAST4 375449 broad.mit.edu 36 5 66484432 66484432 + Silent SNP A A T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 66484432 66484432 MAST4 5 A A T 7 PCDHGA10 56106 broad.mit.edu 36 5 140773414 140773414 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140773414 140773414 PCDHGA10 5 A A C 12 HIST1H1T 3010 broad.mit.edu 36 6 26215966 26215966 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26215966 26215966 HIST1H1T 6 C C G 20 HSPA1L 3305 broad.mit.edu 36 6 31886993 31886993 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31886993 31886993 HSPA1L 6 C C G 30 FHL5 9457 broad.mit.edu 36 6 97158240 97158240 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 97158240 97158240 FHL5 6 C C A 20 ALDH8A1 64577 broad.mit.edu 36 6 135281568 135281568 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135281568 135281568 ALDH8A1 6 A A C 4 ZNF107 51427 broad.mit.edu 36 7 63804233 63804233 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 A T A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 63804233 63804233 ZNF107 7 A A T 16 LRRC4 64101 broad.mit.edu 36 7 127457729 127457729 + Silent SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 127457729 127457729 LRRC4 7 G G A 39 NRG1 3084 broad.mit.edu 36 8 32740361 32740361 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32740361 32740361 NRG1 8 G G T 33 TG 7038 broad.mit.edu 36 8 134111322 134111322 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 134111322 134111322 TG 8 C C T 23 AKNA 80709 broad.mit.edu 36 9 116153002 116153002 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 116153002 116153002 AKNA 9 G G C 48 TOR1A 1861 broad.mit.edu 36 9 131620928 131620928 + Silent SNP G G A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 131620928 131620928 TOR1A 9 G G A 45 TSPAN7 7102 broad.mit.edu 36 X 38415583 38415583 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38415583 38415583 TSPAN7 23 T T A 60 PHRF1 57661 broad.mit.edu 36 11 598503 598514 + In_Frame_Del DEL GGACGCGCTCTG - GGACGCGCTCTG novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 598503 598514 PHRF1 11 GGACGCGCTCTG - GGACGCGCTCTG 39 SSPO 23145 broad.mit.edu 36 7 149146122 149146122 + Frame_Shift_Del DEL A - A novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 149146122 149146122 SSPO 7 A - A 13 RB1CC1 9821 broad.mit.edu 36 8 53731173 53731175 + In_Frame_Del DEL CAA - CAA novel Unknown TCGA-23-1030-01 TCGA-23-1030-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 53731173 53731175 RB1CC1 8 CAA - CAA 29