Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAM2	2515	hgsc.bcm.edu	36	8	39732459	39732459	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39732459	39732459	ADAM2	8	T	T	G	51
ARSF	416	hgsc.bcm.edu	36	X	3012505	3012505	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3012505	3012505	ARSF	23	G	G	A	39
ATRNL1	26033	hgsc.bcm.edu	36	10	117049749	117049749	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	117049749	117049749	ATRNL1	10	T	T	A	57
C7orf10	79783	hgsc.bcm.edu	36	7	40455461	40455461	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40455461	40455461	C7orf10	7	G	G	T	34
CA9	768	hgsc.bcm.edu	36	9	35669874	35669874	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35669874	35669874	CA9	9	G	G	A	48
CDK5RAP1	51654	hgsc.bcm.edu	36	20	31448341	31448341	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31448341	31448341	CDK5RAP1	20	G	G	T	36
CEBPZ	10153	hgsc.bcm.edu	36	2	37309535	37309535	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	37309535	37309535	CEBPZ	2	A	A	G	2
CENPE	1062	hgsc.bcm.edu	36	4	104285137	104285137	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	104285137	104285137	CENPE	4	A	A	G	3
COL6A3	1293	hgsc.bcm.edu	36	2	237968338	237968338	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	237968338	237968338	COL6A3	2	C	C	A	22
CTDSP1	58190	hgsc.bcm.edu	36	2	218974574	218974574	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	218974574	218974574	CTDSP1	2	C	C	T	25
CTNND2	1501	hgsc.bcm.edu	36	5	11026590	11026590	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11026590	11026590	CTNND2	5	G	G	A	39
EIF2AK3	9451	hgsc.bcm.edu	36	2	88638527	88638527	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	88638527	88638527	EIF2AK3	2	G	G	A	40
EPHB4	2050	hgsc.bcm.edu	36	7	100248358	100248358	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100248358	100248358	EPHB4	7	C	C	T	19
FBXL20	84961	hgsc.bcm.edu	36	17	34678605	34678605	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	34678605	34678605	FBXL20	17	C	C	T	18
FGFR1	2260	hgsc.bcm.edu	36	8	38394953	38394953	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38394953	38394953	FGFR1	8	G	G	A	33
FNDC3B	64778	hgsc.bcm.edu	36	3	173448059	173448059	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	173448059	173448059	FNDC3B	3	C	C	T	18
GJA5	2702	hgsc.bcm.edu	36	1	145697869	145697869	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	145697869	145697869	GJA5	1	C	C	T	25
INPP5F	22876	hgsc.bcm.edu	36	10	121576919	121576919	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	121576919	121576919	INPP5F	10	G	G	A	38
ITGB7	3695	hgsc.bcm.edu	36	12	51871969	51871969	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51871969	51871969	ITGB7	12	A	A	G	15
KCNJ1	3758	hgsc.bcm.edu	36	11	128215201	128215201	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	128215201	128215201	KCNJ1	11	A	A	-	7
KCNK10	54207	hgsc.bcm.edu	36	14	87763626	87763626	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87763626	87763626	KCNK10	14	C	C	G	22
LAMA2	3908	hgsc.bcm.edu	36	6	129705303	129705303	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	129705303	129705303	LAMA2	6	C	C	T	17
MAS1L	116511	hgsc.bcm.edu	36	6	29563511	29563511	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29563511	29563511	MAS1L	6	C	C	T	19
MMP1	4312	hgsc.bcm.edu	36	11	102168642	102168642	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	102168642	102168642	MMP1	11	C	C	G	29
MNAT1	4331	hgsc.bcm.edu	36	14	60355243	60355243	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	60355243	60355243	MNAT1	14	A	A	G	12
NUPL1	9818	hgsc.bcm.edu	36	13	24808372	24808372	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24808372	24808372	NUPL1	13	C	C	A	25
OR5B17	219965	hgsc.bcm.edu	36	11	57882755	57882755	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	57882755	57882755	OR5B17	11	C	C	T	27
PDCL2	132954	hgsc.bcm.edu	36	4	56123405	56123405	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56123405	56123405	PDCL2	4	A	A	C	1
PRPF6	24148	hgsc.bcm.edu	36	20	62112060	62112060	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62112060	62112060	PRPF6	20	A	A	T	9
RBM10	8241	hgsc.bcm.edu	36	X	46913777	46913777	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	46913777	46913777	RBM10	23	G	G	A	38
SLC2A14	144195	hgsc.bcm.edu	36	12	7861875	7861875	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7861875	7861875	SLC2A14	12	A	A	C	1
SLK	9748	hgsc.bcm.edu	36	10	105752735	105752735	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	105752735	105752735	SLK	10	A	A	G	3
SNX12	29934	hgsc.bcm.edu	36	X	70199435	70199435	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	70199435	70199435	SNX12	23	A	A	G	16
SON	6651	hgsc.bcm.edu	36	21	33870566	33870566	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	33870566	33870566	SON	21	G	G	-	33
SREBF2	6721	hgsc.bcm.edu	36	22	40599771	40599771	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	40599771	40599771	SREBF2	22	C	C	G	21
TDRD7	23424	hgsc.bcm.edu	36	9	99230677	99230677	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	99230677	99230677	TDRD7	9	G	G	C	33
TMEM132D	121256	hgsc.bcm.edu	36	12	128124941	128124941	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128124941	128124941	TMEM132D	12	T	T	A	64
TNR	7143	hgsc.bcm.edu	36	1	173639206	173639206	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	173639206	173639206	TNR	1	G	G	A	38
TTC33	23548	hgsc.bcm.edu	36	5	40752165	40752165	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	40752165	40752165	TTC33	5	C	C	A	29
VPS13A	23230	hgsc.bcm.edu	36	9	79119353	79119353	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	79119353	79119353	VPS13A	9	C	C	G	20
XRN1	54464	hgsc.bcm.edu	36	3	143623024	143623024	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	143623024	143623024	XRN1	3	A	A	T	3
ZNF642	339559	hgsc.bcm.edu	36	1	40717713	40717713	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-23-1023-01	TCGA-23-1023-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	40717713	40717713	ZNF642	1	G	G	-	48