Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context WASH1 375690 genome.wustl.edu 36 9 4863 4863 + Silent SNP A A G novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 A A A G A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 4863 4863 WASH1 9 A A G 1 BTBD2 55643 genome.wustl.edu 36 19 1948416 1948416 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C T T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1948416 1948416 BTBD2 19 C T T 23 GLIS3 169792 genome.wustl.edu 36 9 3846099 3846099 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3846099 3846099 GLIS3 9 G G C 41 FAM160A2 84067 genome.wustl.edu 36 11 6195620 6195620 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6195620 6195620 FAM160A2 11 C C T 23 FAM38B 63895 genome.wustl.edu 36 18 10681284 10681284 + Nonsense_Mutation SNP G A A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 10681284 10681284 FAM38B 18 G A A 38 CDKN1B 1027 genome.wustl.edu 36 12 12762472 12762472 + Silent SNP A A G novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 12762472 12762472 CDKN1B 12 A A G 15 BTN1A1 696 genome.wustl.edu 36 6 26610033 26610033 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26610033 26610033 BTN1A1 6 C C A 27 OVCH1 341350 genome.wustl.edu 36 12 29488472 29488472 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29488472 29488472 OVCH1 12 C C T 30 GPR179 440435 genome.wustl.edu 36 17 33737958 33737958 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33737958 33737958 GPR179 17 G G A 35 ANKRD27 84079 genome.wustl.edu 36 19 37788636 37788636 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37788636 37788636 ANKRD27 19 G G A 43 KIAA0427 9811 genome.wustl.edu 36 18 44538502 44538502 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44538502 44538502 KIAA0427 18 G A A 38 ABCA13 154664 genome.wustl.edu 36 7 48288863 48288863 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48288863 48288863 ABCA13 7 G G T 36 PPP1R3F 89801 genome.wustl.edu 36 X 49030032 49030032 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49030032 49030032 PPP1R3F 23 A A T 12 TFAP2D 83741 genome.wustl.edu 36 6 50790800 50790800 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50790800 50790800 TFAP2D 6 G G A 39 ENSG00000214552 genome.wustl.edu 36 3 68276961 68276961 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68276961 68276961 ENSG00000214552 3 C C T 27 LHX8 431707 genome.wustl.edu 36 1 75381411 75381411 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75381411 75381411 LHX8 1 C C T 32 ALPK3 57538 genome.wustl.edu 36 15 83201506 83201506 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83201506 83201506 ALPK3 15 G G C 35 RASSF9 9182 genome.wustl.edu 36 12 84723176 84723176 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84723176 84723176 RASSF9 12 T T A 58 SYTL2 54843 genome.wustl.edu 36 11 85113990 85113990 + Silent SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 85113990 85113990 SYTL2 11 C C T 23 SSH1 54434 genome.wustl.edu 36 12 107723085 107723085 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107723085 107723085 SSH1 12 C C T 19 ATP4B 496 genome.wustl.edu 36 13 113355240 113355240 + Silent SNP G G C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 113355240 113355240 ATP4B 13 G G C 47 LRIG2 9860 genome.wustl.edu 36 1 113442849 113442849 + Splice_Site_SNP SNP G G A novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 113442849 113442849 LRIG2 1 G G A 33 BCL2L15 440603 genome.wustl.edu 36 1 114230738 114230738 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114230738 114230738 BCL2L15 1 T T G 63 IGSF3 3321 genome.wustl.edu 36 1 116923808 116923808 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 G G G C G C Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116923808 116923808 IGSF3 1 G G C 40 IGSF3 3321 genome.wustl.edu 36 1 116933217 116933217 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116933217 116933217 IGSF3 1 T T C 58 TMEM132B 114795 genome.wustl.edu 36 12 124701392 124701392 + Silent SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124701392 124701392 TMEM132B 12 C C T 31 PABPC1P2 genome.wustl.edu 36 2 147062247 147062247 + Silent SNP T T C novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 147062247 147062247 PABPC1P2 2 T T C 50 CD99L2 83692 genome.wustl.edu 36 X 149689456 149689456 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1506-01 TCGA-13-1506-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149689456 149689456 CD99L2 23 C C T 19