Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context uc010djz.1 genome.wustl.edu 36 18 37469 37469 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37469 37469 uc010djz.1 18 A A C 6 ANGPT4 51378 genome.wustl.edu 36 20 806888 806888 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 806888 806888 ANGPT4 20 C C T 19 TSPAN9 10867 genome.wustl.edu 36 12 3257869 3257869 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 3257869 3257869 TSPAN9 12 G G T 43 ITPR1 3708 genome.wustl.edu 36 3 4783381 4783381 + Silent SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 4783381 4783381 ITPR1 3 A A G 8 OR6A2 8590 genome.wustl.edu 36 11 6772872 6772872 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6772872 6772872 OR6A2 11 G G T 47 LPCAT3 10162 genome.wustl.edu 36 12 6957772 6957772 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6957772 6957772 LPCAT3 12 C C G 22 LRRC30 339291 genome.wustl.edu 36 18 7221563 7221563 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7221563 7221563 LRRC30 18 G G T 41 HTRA3 94031 genome.wustl.edu 36 4 8356898 8356898 + Silent SNP T T G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 8356898 8356898 HTRA3 4 T T G 56 SHROOM2 357 genome.wustl.edu 36 X 9860271 9860271 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9860271 9860271 SHROOM2 23 G G C 36 MYH4 4622 genome.wustl.edu 36 17 10297840 10297840 + Missense_Mutation SNP T G G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10297840 10297840 MYH4 17 T G G 60 MYH2 4620 genome.wustl.edu 36 17 10381793 10381793 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10381793 10381793 MYH2 17 G G T 46 ODC1 4953 genome.wustl.edu 36 2 10502581 10502581 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10502581 10502581 ODC1 2 T T C 58 CACNA1A 773 genome.wustl.edu 36 19 13280060 13280060 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13280060 13280060 CACNA1A 19 C C A 21 SAMSN1 64092 genome.wustl.edu 36 21 14792667 14792667 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 14792667 14792667 SAMSN1 21 G G A 36 CYP4F3 4051 genome.wustl.edu 36 19 15621867 15621867 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15621867 15621867 CYP4F3 19 C C T 19 EPS8 2059 genome.wustl.edu 36 12 15727127 15727127 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15727127 15727127 EPS8 12 G G T 43 FBXL7 23194 genome.wustl.edu 36 5 15981325 15981325 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15981325 15981325 FBXL7 5 C C T 27 GRPR 2925 genome.wustl.edu 36 X 16078640 16078640 + Silent SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 16078640 16078640 GRPR 23 A A G 1 XYLT1 64131 genome.wustl.edu 36 16 17119016 17119016 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17119016 17119016 XYLT1 16 G G C 42 TUBA3C 7278 genome.wustl.edu 36 13 18650417 18650417 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18650417 18650417 TUBA3C 13 A A G 10 IGSF22 283284 genome.wustl.edu 36 11 18693664 18693664 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18693664 18693664 IGSF22 11 C C G 28 NPC1 4864 genome.wustl.edu 36 18 19375349 19375349 + Silent SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 19375349 19375349 NPC1 18 C C A 23 ALDH3A2 224 genome.wustl.edu 36 17 19508856 19508856 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19508856 19508856 ALDH3A2 17 A A G 8 LAMA3 3909 genome.wustl.edu 36 18 19701848 19701848 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19701848 19701848 LAMA3 18 G G A 39 SDC1 6382 genome.wustl.edu 36 2 20268660 20268660 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20268660 20268660 SDC1 2 C C G 17 uc001wbi.2 genome.wustl.edu 36 14 21160479 21160479 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21160479 21160479 uc001wbi.2 14 G G A 36 NUPL2 11097 genome.wustl.edu 36 7 23206653 23206653 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23206653 23206653 NUPL2 7 G G A 47 TM9SF1 10548 genome.wustl.edu 36 14 23732000 23732000 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23732000 23732000 TM9SF1 14 G G A 39 MDS2 259283 genome.wustl.edu 36 1 23838327 23838327 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23838327 23838327 MDS2 1 A A G 11 GPLD1 2822 genome.wustl.edu 36 6 24570966 24570966 + Silent SNP T T A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 24570966 24570966 GPLD1 6 T T A 51 SEZ6L 23544 genome.wustl.edu 36 22 25036763 25036763 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25036763 25036763 SEZ6L 22 C A A 21 DNMT3A 1788 genome.wustl.edu 36 2 25316788 25316788 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25316788 25316788 DNMT3A 2 G G A 35 CCDC55 84081 genome.wustl.edu 36 17 25536462 25536462 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25536462 25536462 CCDC55 17 G G A 33 ATAD5 79915 genome.wustl.edu 36 17 26228597 26228597 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26228597 26228597 ATAD5 17 G G C 33 OTOF 9381 genome.wustl.edu 36 2 26543219 26543219 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26543219 26543219 OTOF 2 G G A 41 SLC5A12 159963 genome.wustl.edu 36 11 26651643 26651643 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26651643 26651643 SLC5A12 11 C C T 32 HOXA6 3203 genome.wustl.edu 36 7 27153876 27153876 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 27153876 27153876 HOXA6 7 C C T 29 NEK10 152110 genome.wustl.edu 36 3 27191211 27191211 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27191211 27191211 NEK10 3 C C A 32 TJP1 7082 genome.wustl.edu 36 15 27799406 27799406 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27799406 27799406 TJP1 15 T T A 54 HIST1H2AM 8336 genome.wustl.edu 36 6 27968906 27968906 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27968906 27968906 HIST1H2AM 6 T T C 51 FOSL2 2355 genome.wustl.edu 36 2 28488703 28488703 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28488703 28488703 FOSL2 2 G G C 41 RNF160 26046 genome.wustl.edu 36 21 29280389 29280389 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29280389 29280389 RNF160 21 G G A 48 TRIM26 7726 genome.wustl.edu 36 6 30272432 30272432 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30272432 30272432 TRIM26 6 C C T 23 SRCAP 10847 genome.wustl.edu 36 16 30639033 30639033 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30639033 30639033 SRCAP 16 C T T 32 SPOCD1 90853 genome.wustl.edu 36 1 32029433 32029433 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32029433 32029433 SPOCD1 1 C C T 24 DMD 1756 genome.wustl.edu 36 X 32292683 32292683 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32292683 32292683 DMD 23 C C G 24 NCOA6 23054 genome.wustl.edu 36 20 32793754 32793754 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32793754 32793754 NCOA6 20 G G A 40 SYNJ1 8867 genome.wustl.edu 36 21 32979982 32979982 + Silent SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32979982 32979982 SYNJ1 21 G G C 41 HEATR5B 54497 genome.wustl.edu 36 2 37069439 37069439 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37069439 37069439 HEATR5B 2 G G C 35 DMC1 11144 genome.wustl.edu 36 22 37294187 37294187 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37294187 37294187 DMC1 22 C C T 21 ACLY 47 genome.wustl.edu 36 17 37323524 37323524 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37323524 37323524 ACLY 17 C C G 25 CLEC14A 161198 genome.wustl.edu 36 14 37794218 37794218 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37794218 37794218 CLEC14A 14 C C A 26 MCART1 92014 genome.wustl.edu 36 9 37877988 37877988 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37877988 37877988 MCART1 9 T T A 52 TYRO3 7301 genome.wustl.edu 36 15 39657412 39657412 + Silent SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39657412 39657412 TYRO3 15 C C G 21 RIMS4 140730 genome.wustl.edu 36 20 42833460 42833460 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42833460 42833460 RIMS4 20 G G A 39 WFDC10B 280664 genome.wustl.edu 36 20 43746983 43746983 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43746983 43746983 WFDC10B 20 A A G 16 ZNF182 7569 genome.wustl.edu 36 X 47721099 47721099 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47721099 47721099 ZNF182 23 T T C 60 USP19 10869 genome.wustl.edu 36 3 49129040 49129040 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49129040 49129040 USP19 3 G G A 39 OR4C12 283093 genome.wustl.edu 36 11 49960414 49960414 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49960414 49960414 OR4C12 11 A A G 16 KRT4 3851 genome.wustl.edu 36 12 51487226 51487226 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51487226 51487226 KRT4 12 C C A 20 ERBB3 2065 genome.wustl.edu 36 12 54781659 54781659 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54781659 54781659 ERBB3 12 T T A 51 BBS2 583 genome.wustl.edu 36 16 55077050 55077050 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55077050 55077050 BBS2 16 T T C 60 PAGE2 203569 genome.wustl.edu 36 X 55133768 55133768 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55133768 55133768 PAGE2 23 G G T 35 HEPH 9843 genome.wustl.edu 36 X 65334323 65334323 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 65334323 65334323 HEPH 23 C C T 23 KCNJ16 3773 genome.wustl.edu 36 17 65639961 65639961 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 65639961 65639961 KCNJ16 17 C C T 20 CTCF 10664 genome.wustl.edu 36 16 66203446 66203446 + Missense_Mutation SNP G C C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66203446 66203446 CTCF 16 G C C 33 LRRC7 57554 genome.wustl.edu 36 1 69916717 69916717 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 69916717 69916717 LRRC7 1 G G T 40 DNAH17 8632 genome.wustl.edu 36 17 74008900 74008900 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74008900 74008900 DNAH17 17 C C A 26 DCTN1 1639 genome.wustl.edu 36 2 74448668 74448668 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74448668 74448668 DCTN1 2 G G C 34 NAP1L1 4673 genome.wustl.edu 36 12 74733342 74733342 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74733342 74733342 NAP1L1 12 T T G 62 ROBO2 6092 genome.wustl.edu 36 3 76069385 76069385 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 76069385 76069385 ROBO2 3 G G A 39 CCDC57 284001 genome.wustl.edu 36 17 77739575 77739575 + Missense_Mutation SNP C G G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77739575 77739575 CCDC57 17 C G G 28 CMYA5 202333 genome.wustl.edu 36 5 79068119 79068119 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79068119 79068119 CMYA5 5 C C T 17 FRAS1 80144 genome.wustl.edu 36 4 79570543 79570543 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 79570543 79570543 FRAS1 4 G G A 34 TTK 7272 genome.wustl.edu 36 6 80777897 80777897 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 80777897 80777897 TTK 6 C C G 29 DACH2 117154 genome.wustl.edu 36 X 85957759 85957759 + Splice_Site_SNP SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 85957759 85957759 DACH2 23 G G T 44 SPATA7 55812 genome.wustl.edu 36 14 87952878 87952878 + Silent SNP T T G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 87952878 87952878 SPATA7 14 T T G 53 OR5H15 403274 genome.wustl.edu 36 3 99370996 99370996 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99370996 99370996 OR5H15 3 C C A 24 AFF3 3899 genome.wustl.edu 36 2 99541780 99541780 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99541780 99541780 AFF3 2 C C G 31 NALCN 259232 genome.wustl.edu 36 13 100512349 100512349 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100512349 100512349 NALCN 13 A A G 11 ALG2 85365 genome.wustl.edu 36 9 101020710 101020710 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101020710 101020710 ALG2 9 T T G 59 ABI3BP 25890 genome.wustl.edu 36 3 102049161 102049161 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102049161 102049161 ABI3BP 3 G G T 42 NHEDC1 150159 genome.wustl.edu 36 4 104047236 104047236 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104047236 104047236 NHEDC1 4 C C G 32 NUAK1 9891 genome.wustl.edu 36 12 104985028 104985028 + Silent SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 104985028 104985028 NUAK1 12 G G C 41 KBTBD3 143879 genome.wustl.edu 36 11 105434873 105434873 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105434873 105434873 KBTBD3 11 G G T 45 FRMPD3 84443 genome.wustl.edu 36 X 106727668 106727668 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106727668 106727668 FRMPD3 23 C C G 31 COL4A6 1288 genome.wustl.edu 36 X 107291514 107291514 + Nonsense_Mutation SNP C A A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 107291514 107291514 COL4A6 23 C A A 24 ANGPT1 284 genome.wustl.edu 36 8 108403533 108403533 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 108403533 108403533 ANGPT1 8 C C T 20 CAPN6 827 genome.wustl.edu 36 X 110382275 110382275 + Silent SNP A A T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 110382275 110382275 CAPN6 23 A A T 7 DPPA2 151871 genome.wustl.edu 36 3 110509627 110509627 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 110509627 110509627 DPPA2 3 C C T 24 DOCK4 9732 genome.wustl.edu 36 7 111217830 111217830 + Silent SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 111217830 111217830 DOCK4 7 C C T 28 XPNPEP1 7511 genome.wustl.edu 36 10 111620629 111620629 + Missense_Mutation SNP G C C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111620629 111620629 XPNPEP1 10 G C C 39 NCAM1 4684 genome.wustl.edu 36 11 112583779 112583779 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112583779 112583779 NCAM1 11 T T C 49 C9orf84 158401 genome.wustl.edu 36 9 113529997 113529997 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113529997 113529997 C9orf84 9 G G A 46 FKBP15 23307 genome.wustl.edu 36 9 115009362 115009362 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115009362 115009362 FKBP15 9 T T C 51 ATRNL1 26033 genome.wustl.edu 36 10 116879136 116879136 + Silent SNP T T C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 116879136 116879136 ATRNL1 10 T T C 55 ROS1 6098 genome.wustl.edu 36 6 117822073 117822073 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 117822073 117822073 ROS1 6 G G T 33 KDM2B 84678 genome.wustl.edu 36 12 120362202 120362202 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120362202 120362202 KDM2B 12 C C A 30 CASR 846 genome.wustl.edu 36 3 123458629 123458629 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123458629 123458629 CASR 3 G G A 40 TACC2 10579 genome.wustl.edu 36 10 123832305 123832305 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 123832305 123832305 TACC2 10 G G A 40 GOLGA3 2802 genome.wustl.edu 36 12 131883237 131883237 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131883237 131883237 GOLGA3 12 C C G 21 ASS1 445 genome.wustl.edu 36 9 132366225 132366225 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132366225 132366225 ASS1 9 A A C 1 TTF1 7270 genome.wustl.edu 36 9 134267311 134267311 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 134267311 134267311 TTF1 9 G G C 37 ANKRD35 148741 genome.wustl.edu 36 1 144273633 144273633 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144273633 144273633 ANKRD35 1 A A T 11 ARSI 340075 genome.wustl.edu 36 5 149657080 149657080 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149657080 149657080 ARSI 5 C A A 24 GYG1 2992 genome.wustl.edu 36 3 150197238 150197238 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150197238 150197238 GYG1 3 A A T 12 GABRA3 2556 genome.wustl.edu 36 X 151087577 151087577 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151087577 151087577 GABRA3 23 C C T 27 MLL3 58508 genome.wustl.edu 36 7 151491100 151491100 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151491100 151491100 MLL3 7 G G C 47 PGLYRP4 57115 genome.wustl.edu 36 1 151584401 151584401 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151584401 151584401 PGLYRP4 1 G G A 40 F8 2157 genome.wustl.edu 36 X 153743231 153743231 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153743231 153743231 F8 23 C C G 28 IQGAP3 128239 genome.wustl.edu 36 1 154799639 154799639 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 154799639 154799639 IQGAP3 1 G G A 33 GPR149 344758 genome.wustl.edu 36 3 155629157 155629157 + Silent SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 155629157 155629157 GPR149 3 G G T 41 TMEM181 57583 genome.wustl.edu 36 6 158922008 158922008 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158922008 158922008 TMEM181 6 G G T 34 FNDC1 84624 genome.wustl.edu 36 6 159590077 159590077 + Silent SNP G A A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 159590077 159590077 FNDC1 6 G A A 40 FAP 2191 genome.wustl.edu 36 2 162767902 162767902 + Splice_Site_SNP SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 162767902 162767902 FAP 2 C C G 20 SELE 6401 genome.wustl.edu 36 1 167963921 167963921 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 167963921 167963921 SELE 1 C C A 17 TTN 7273 genome.wustl.edu 36 2 179309012 179309012 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179309012 179309012 TTN 2 C A A 20 ATP2B4 493 genome.wustl.edu 36 1 201939470 201939470 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 201939470 201939470 ATP2B4 1 G G C 35 KCNH1 3756 genome.wustl.edu 36 1 209044047 209044047 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 209044047 209044047 KCNH1 1 A A G 11 CCDC108 255101 genome.wustl.edu 36 2 219608429 219608429 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219608429 219608429 CCDC108 2 A A T 12 SLC16A14 151473 genome.wustl.edu 36 2 230619465 230619465 + Silent SNP C C A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 230619465 230619465 SLC16A14 2 C C A 27 ACTN2 88 genome.wustl.edu 36 1 234972931 234972931 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 234972931 234972931 ACTN2 1 G G T 35 SH3BP4 23677 genome.wustl.edu 36 2 235615550 235615550 + Silent SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 235615550 235615550 SH3BP4 2 G G A 48 OR2G6 391211 genome.wustl.edu 36 1 246752148 246752148 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 246752148 246752148 OR2G6 1 C C T 20 TP53 7157 genome.wustl.edu 36 17 7514755 7514755 + Frame_Shift_Del DEL G G - novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G - G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 7514755 7514755 TP53 17 G G - 39 ACCN1 40 genome.wustl.edu 36 17 28372415 28372425 + Frame_Shift_Del DEL AATATATCCAG AATATATCCAG - novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 AATATATCCAG AATATATCCAG AATATATCCAG - AATATATCCAG AATATATCCAG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 28372415 28372425 ACCN1 17 AATATATCCAG AATATATCCAG - 1 TPD52 7163 genome.wustl.edu 36 8 81139280 81139282 + In_Frame_Del DEL TCT TCT - novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 TCT TCT TCT - TCT TCT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 81139280 81139282 TPD52 8 TCT TCT - 54 MTHFD1L 25902 genome.wustl.edu 36 6 151399838 151399871 + Frame_Shift_Del DEL TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA - novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA - TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 151399838 151399871 MTHFD1L 6 TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA - 54 ALG11 440138 genome.wustl.edu 36 13 51491273 51491273 + Missense_Mutation SNP C G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C G C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51491273 51491273 ALG11 13 C G C 25 GNPAT 8443 genome.wustl.edu 36 1 229474686 229474686 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 229474686 229474686 GNPAT 1 G G T 48 WDR78 79819 genome.wustl.edu 36 1 67131676 67131676 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67131676 67131676 WDR78 1 G G T 48 KIAA1274 27143 genome.wustl.edu 36 10 71968077 71968077 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71968077 71968077 KIAA1274 10 G G T 42 P2RY6 5031 genome.wustl.edu 36 11 72686049 72686049 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72686049 72686049 P2RY6 11 G G T 46 OTOP3 347741 genome.wustl.edu 36 17 70455145 70455145 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70455145 70455145 OTOP3 17 C T T 24 MYOM1 8736 genome.wustl.edu 36 18 3092608 3092608 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3092608 3092608 MYOM1 18 T T G 64 CCDC105 126402 genome.wustl.edu 36 19 14994816 14994816 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14994816 14994816 CCDC105 19 G G A 38 SUPT5H 6829 genome.wustl.edu 36 19 44651750 44651750 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44651750 44651750 SUPT5H 19 C C T 27 APOB 338 genome.wustl.edu 36 2 21114419 21114419 + Silent SNP A A G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21114419 21114419 APOB 2 A A G 3 IFT52 51098 genome.wustl.edu 36 20 41698011 41698011 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41698011 41698011 IFT52 20 C C G 18 ZDHHC19 131540 genome.wustl.edu 36 3 197422537 197422537 + Missense_Mutation SNP G G A Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 197422537 197422537 ZDHHC19 3 G G A 43 EPHA1 2041 genome.wustl.edu 36 7 142798707 142798707 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142798707 142798707 EPHA1 7 G G A 38 DPP6 1804 genome.wustl.edu 36 7 154010382 154010382 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 154010382 154010382 DPP6 7 T T A 58 SLC30A8 169026 genome.wustl.edu 36 8 118253979 118253979 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118253979 118253979 SLC30A8 8 G G C 44 CSMD1 64478 genome.wustl.edu 36 8 2802658 2802658 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1497-01 TCGA-13-1497-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2802658 2802658 CSMD1 8 A A T 1