Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PDYN 5173 genome.wustl.edu 36 20 1909196 1909196 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1909196 1909196 PDYN 20 G G A 38 E4F1 1877 genome.wustl.edu 36 16 2222784 2222784 + Missense_Mutation SNP T G G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2222784 2222784 E4F1 16 T G G 59 TP53 7157 genome.wustl.edu 36 17 7517824 7517824 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517824 7517824 TP53 17 C C A 32 KIDINS220 57498 genome.wustl.edu 36 2 8843568 8843568 + Silent SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 8843568 8843568 KIDINS220 2 G G T 45 COL5A3 50509 genome.wustl.edu 36 19 9958016 9958016 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9958016 9958016 COL5A3 19 C C G 22 FAM171A1 221061 genome.wustl.edu 36 10 15296371 15296371 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15296371 15296371 FAM171A1 10 C C A 24 LOC100132032 genome.wustl.edu 36 22 15370301 15370301 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C T T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15370301 15370301 LOC100132032 22 C T T 27 ESPNP genome.wustl.edu 36 1 16903202 16903202 + Silent SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 16903202 16903202 ESPNP 1 G G T 39 RFXANK 8625 genome.wustl.edu 36 19 19171021 19171021 + Silent SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 19171021 19171021 RFXANK 19 C C T 23 ERN2 10595 genome.wustl.edu 36 16 23614081 23614081 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 23614081 23614081 ERN2 16 C C A 31 CTSG 1511 genome.wustl.edu 36 14 24112714 24112714 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24112714 24112714 CTSG 14 T T A 64 HADHB 3032 genome.wustl.edu 36 2 26350074 26350074 + Silent SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 26350074 26350074 HADHB 2 C C T 32 AK2 204 genome.wustl.edu 36 1 33251378 33251378 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33251378 33251378 AK2 1 C C G 17 CSRNP1 64651 genome.wustl.edu 36 3 39160740 39160740 + Silent SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39160740 39160740 CSRNP1 3 C C T 28 DSCAM 1826 genome.wustl.edu 36 21 40427701 40427701 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40427701 40427701 DSCAM 21 G G A 46 KRTAP10-9 386676 genome.wustl.edu 36 21 44871722 44871722 + Nonsense_Mutation SNP C G G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 44871722 44871722 KRTAP10-9 21 C G G 29 RTP3 83597 genome.wustl.edu 36 3 46514655 46514655 + Silent SNP T T A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 46514655 46514655 RTP3 3 T T A 62 ZNF81 347344 genome.wustl.edu 36 X 47659779 47659779 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47659779 47659779 ZNF81 23 A A G 1 LOC283116 283116 genome.wustl.edu 36 11 49009893 49009893 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49009893 49009893 LOC283116 11 A A C 6 KRT2 3849 genome.wustl.edu 36 12 51327830 51327830 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51327830 51327830 KRT2 12 T T C 60 UNC13C 440279 genome.wustl.edu 36 15 52093232 52093232 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52093232 52093232 UNC13C 15 T T A 59 MMP2 4313 genome.wustl.edu 36 16 54089739 54089739 + Silent SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54089739 54089739 MMP2 16 G G A 34 SLC17A7 57030 genome.wustl.edu 36 19 54629855 54629855 + Silent SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54629855 54629855 SLC17A7 19 G G A 41 MRC2 9902 genome.wustl.edu 36 17 58119433 58119433 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58119433 58119433 MRC2 17 G G A 42 LENG1 79165 genome.wustl.edu 36 19 59352576 59352576 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 59352576 59352576 LENG1 19 C C T 24 KIR3DX1 90011 genome.wustl.edu 36 19 59736895 59736895 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59736895 59736895 KIR3DX1 19 G G T 34 BICC1 80114 genome.wustl.edu 36 10 60230718 60230719 + Missense DNP GG GG TT novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 GG GG GG TT GG GG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 60230718 60230719 BICC1 10 GG GG TT 47 TMBIM4 51643 genome.wustl.edu 36 12 64832396 64832396 + Silent SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 64832396 64832396 TMBIM4 12 G G A 37 BAI3 577 genome.wustl.edu 36 6 70097117 70097117 + Splice_Site_SNP SNP A A T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 70097117 70097117 BAI3 6 A A T 7 TAF1 6872 genome.wustl.edu 36 X 70596264 70596264 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70596264 70596264 TAF1 23 A A C 3 CXCR3 2833 genome.wustl.edu 36 X 70754028 70754028 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70754028 70754028 CXCR3 23 C C T 29 ISLR 3671 genome.wustl.edu 36 15 72254722 72254722 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72254722 72254722 ISLR 15 G G A 38 ALDH1A1 216 genome.wustl.edu 36 9 74721788 74721788 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74721788 74721788 ALDH1A1 9 C C T 20 MAGI2 9863 genome.wustl.edu 36 7 77723397 77723397 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77723397 77723397 MAGI2 7 C C G 23 IL16 3603 genome.wustl.edu 36 15 79339214 79339214 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79339214 79339214 IL16 15 C C A 25 CLCA2 9635 genome.wustl.edu 36 1 86672867 86672867 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86672867 86672867 CLCA2 1 G G T 46 SV2B 9899 genome.wustl.edu 36 15 89596149 89596149 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89596149 89596149 SV2B 15 C C T 26 MAP3K7 6885 genome.wustl.edu 36 6 91314573 91314573 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91314573 91314573 MAP3K7 6 C C T 29 ENTPD7 57089 genome.wustl.edu 36 10 101429140 101429140 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101429140 101429140 ENTPD7 10 C C A 18 NFKBIZ 64332 genome.wustl.edu 36 3 103057266 103057266 + Splice_Site_SNP SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 103057266 103057266 NFKBIZ 3 G G T 35 MYO16 23026 genome.wustl.edu 36 13 108116343 108116343 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108116343 108116343 MYO16 13 G G A 38 RGAG1 57529 genome.wustl.edu 36 X 109581565 109581565 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109581565 109581565 RGAG1 23 C C A 22 SLC6A14 11254 genome.wustl.edu 36 X 115486270 115486270 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115486270 115486270 SLC6A14 23 G G C 47 SLC22A15 55356 genome.wustl.edu 36 1 116363787 116363787 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116363787 116363787 SLC22A15 1 G G C 44 GDAP2 54834 genome.wustl.edu 36 1 118222153 118222153 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 118222153 118222153 GDAP2 1 C C T 18 WNT16 51384 genome.wustl.edu 36 7 120766520 120766520 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120766520 120766520 WNT16 7 G G A 44 XIAP 331 genome.wustl.edu 36 X 122847726 122847726 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122847726 122847726 XIAP 23 A A G 6 WDR5B 54554 genome.wustl.edu 36 3 123616346 123616346 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123616346 123616346 WDR5B 3 G G T 46 BBS12 166379 genome.wustl.edu 36 4 123882867 123882867 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123882867 123882867 BBS12 4 A A T 15 CNTNAP5 129684 genome.wustl.edu 36 2 125388203 125388203 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 125388203 125388203 CNTNAP5 2 C C A 18 TRIM24 8805 genome.wustl.edu 36 7 137920089 137920089 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 137920089 137920089 TRIM24 7 G G C 33 MRPS22 56945 genome.wustl.edu 36 3 140548472 140548472 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140548472 140548472 MRPS22 3 C C G 20 uc003vxi.2 genome.wustl.edu 36 7 141667577 141667577 + Silent SNP T T C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 141667577 141667577 uc003vxi.2 7 T T C 54 HORMAD1 84072 genome.wustl.edu 36 1 148947432 148947432 + Silent SNP A A T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 148947432 148947432 HORMAD1 1 A A T 1 FLG 2312 genome.wustl.edu 36 1 150545961 150545961 + Silent SNP A A G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 150545961 150545961 FLG 1 A A G 3 KPRP 448834 genome.wustl.edu 36 1 151000349 151000349 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151000349 151000349 KPRP 1 G G A 39 ENSG00000214210 genome.wustl.edu 36 3 165202307 165202307 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165202307 165202307 ENSG00000214210 3 C C A 24 ABCF3 55324 genome.wustl.edu 36 3 185388622 185388622 + Splice_Site_SNP SNP G G T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 185388622 185388622 ABCF3 3 G G T 33 CASP10 843 genome.wustl.edu 36 2 201778884 201778884 + Silent SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 201778884 201778884 CASP10 2 C C T 32 LOC100129743 genome.wustl.edu 36 2 203613403 203613403 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 203613403 203613403 LOC100129743 2 C C T 20 RAPH1 65059 genome.wustl.edu 36 2 204028509 204028509 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 204028509 204028509 RAPH1 2 C C T 29 NLRP3 114548 genome.wustl.edu 36 1 245666066 245666066 + Splice_Site_SNP SNP G G C novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 245666066 245666066 NLRP3 1 G G C 44 SLC22A12 116085 genome.wustl.edu 36 11 64115725 64115747 + Frame_Shift_Del DEL TCGGCCGCCGTGCCCAGCCACCG TCGGCCGCCGTGCCCAGCCACCG - novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 TCGGCCGCCGTGCCCAGCCACCG TCGGCCGCCGTGCCCAGCCACCG TCGGCCGCCGTGCCCAGCCACCG - TCGGCCGCCGTGCCCAGCCACCG TCGGCCGCCGTGCCCAGCCACCG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 64115725 64115747 SLC22A12 11 TCGGCCGCCGTGCCCAGCCACCG TCGGCCGCCGTGCCCAGCCACCG - 54 LOC653641 653641 genome.wustl.edu 36 15 73343458 73343458 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73343458 73343458 LOC653641 15 A A G 7 LOC100131134 genome.wustl.edu 36 7 128280650 128280650 + Silent SNP T A A novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 T T A A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128280650 128280650 LOC100131134 7 T A A 53 STAG3 10734 genome.wustl.edu 36 7 99636423 99636423 + Silent SNP C C T novel Unknown TCGA-13-1482-01 TCGA-13-1482-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 99636423 99636423 STAG3 7 C C T 32 PRRG3 79057 genome.wustl.edu 36 X 150619956 150619957 + Frame_Shift_Ins INS - - T Unknown TCGA-13-1482-01 TCGA-13-1482-10 - - - T - - Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 150619956 150619957 PRRG3 23 - - T 43