Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TUBB8 347688 genome.wustl.edu 36 10 83295 83295 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83295 83295 TUBB8 10 G G C 43 C20orf46 55321 genome.wustl.edu 36 20 1110098 1110098 + Silent SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 1110098 1110098 C20orf46 20 G G T 47 MYT1L 23040 genome.wustl.edu 36 2 1905091 1905091 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1905091 1905091 MYT1L 2 T T A 51 MYT1L 23040 genome.wustl.edu 36 2 1905837 1905837 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1905837 1905837 MYT1L 2 A A C 6 RASSF2 9770 genome.wustl.edu 36 20 4718300 4718300 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4718300 4718300 RASSF2 20 C C T 27 TP53 7157 genome.wustl.edu 36 17 7519125 7519125 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7519125 7519125 TP53 17 G G C 43 LSMD1 84316 genome.wustl.edu 36 17 7701360 7701360 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7701360 7701360 LSMD1 17 G G A 36 ANGPTL4 51129 genome.wustl.edu 36 19 8337185 8337185 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8337185 8337185 ANGPTL4 19 A A C 5 WDR1 9948 genome.wustl.edu 36 4 9688109 9688109 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9688109 9688109 WDR1 4 T T C 52 SAMSN1 64092 genome.wustl.edu 36 21 14794923 14794923 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14794923 14794923 SAMSN1 21 C C T 30 KIAA1026 23254 genome.wustl.edu 36 1 15264712 15264712 + Splice_Site_SNP SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 15264712 15264712 KIAA1026 1 G G T 36 UBR4 23352 genome.wustl.edu 36 1 19352973 19352973 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19352973 19352973 UBR4 1 T T G 54 OR4K2 390431 genome.wustl.edu 36 14 19415120 19415120 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19415120 19415120 OR4K2 14 T T A 49 OSBPL1A 114876 genome.wustl.edu 36 18 20151128 20151128 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20151128 20151128 OSBPL1A 18 T T G 58 IGLV3-22 0 genome.wustl.edu 36 22 21377142 21377142 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21377142 21377142 IGLV3-22 22 G G C 35 PSME1 5720 genome.wustl.edu 36 14 23677155 23677155 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23677155 23677155 PSME1 14 G G T 36 ITSN2 50618 genome.wustl.edu 36 2 24287180 24287180 + Silent SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 24287180 24287180 ITSN2 2 C C T 27 EBF2 64641 genome.wustl.edu 36 8 25800201 25800201 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25800201 25800201 EBF2 8 C C A 18 TEK 7010 genome.wustl.edu 36 9 27207734 27207734 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27207734 27207734 TEK 9 G G T 48 CAD 790 genome.wustl.edu 36 2 27294367 27294367 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27294367 27294367 CAD 2 G G C 47 HIST1H3H 8357 genome.wustl.edu 36 6 27885855 27885855 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27885855 27885855 HIST1H3H 6 C C G 31 HIST1H4J 8363 genome.wustl.edu 36 6 27900168 27900168 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27900168 27900168 HIST1H4J 6 G G T 38 HLA-G 3135 genome.wustl.edu 36 6 29905688 29905688 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29905688 29905688 HLA-G 6 G G T 35 ARHGAP5 394 genome.wustl.edu 36 14 31630296 31630296 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31630296 31630296 ARHGAP5 14 G G T 48 BAT2 7916 genome.wustl.edu 36 6 31702885 31702885 + Silent SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 31702885 31702885 BAT2 6 C C G 22 TAPBP 6892 genome.wustl.edu 36 6 33380202 33380202 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33380202 33380202 TAPBP 6 G G A 47 DLGAP3 58512 genome.wustl.edu 36 1 35105308 35105308 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35105308 35105308 DLGAP3 1 G G C 37 RARA 5914 genome.wustl.edu 36 17 35765168 35765168 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35765168 35765168 RARA 17 G G C 33 NPR2 4882 genome.wustl.edu 36 9 35798671 35798671 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35798671 35798671 NPR2 9 G G T 44 C6orf222 389384 genome.wustl.edu 36 6 36405842 36405842 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36405842 36405842 C6orf222 6 G G C 37 NKIRAS2 28511 genome.wustl.edu 36 17 37428150 37428150 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37428150 37428150 NKIRAS2 17 A A T 3 DPY19L3 147991 genome.wustl.edu 36 19 37664893 37664893 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37664893 37664893 DPY19L3 19 G G A 33 RIT2 6014 genome.wustl.edu 36 18 38808108 38808108 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38808108 38808108 RIT2 18 C C T 32 DNAH8 1769 genome.wustl.edu 36 6 39047404 39047404 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39047404 39047404 DNAH8 6 G G C 33 CDAN1 146059 genome.wustl.edu 36 15 40804705 40804705 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40804705 40804705 CDAN1 15 C C G 30 NKTR 4820 genome.wustl.edu 36 3 42653489 42653489 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42653489 42653489 NKTR 3 G G A 38 POTEA 340441 genome.wustl.edu 36 8 43271424 43271424 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43271424 43271424 POTEA 8 C C A 28 ZNF32 7580 genome.wustl.edu 36 10 43460106 43460106 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43460106 43460106 ZNF32 10 G G T 48 DPH2 1802 genome.wustl.edu 36 1 44209798 44209798 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44209798 44209798 DPH2 1 G G A 33 SLC13A3 64849 genome.wustl.edu 36 20 44672535 44672535 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44672535 44672535 SLC13A3 20 C C A 24 PKDREJ 10343 genome.wustl.edu 36 22 45033730 45033730 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45033730 45033730 PKDREJ 22 T T C 52 NUP160 23279 genome.wustl.edu 36 11 47786597 47786597 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47786597 47786597 NUP160 11 G G A 41 STON1-GTF2A1L 286749 genome.wustl.edu 36 2 48727208 48727208 + Silent SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48727208 48727208 STON1-GTF2A1L 2 A A G 13 ANKRD33 341405 genome.wustl.edu 36 12 50570999 50570999 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 50570999 50570999 ANKRD33 12 G G A 38 FRMD6 122786 genome.wustl.edu 36 14 51264265 51264265 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51264265 51264265 FRMD6 14 A A G 12 CCDC114 93233 genome.wustl.edu 36 19 53493149 53493149 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53493149 53493149 CCDC114 19 G G A 39 MPO 4353 genome.wustl.edu 36 17 53706008 53706008 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53706008 53706008 MPO 17 G G A 35 NACA 4666 genome.wustl.edu 36 12 55393239 55393239 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55393239 55393239 NACA 12 G G C 37 CCDC88A 55704 genome.wustl.edu 36 2 55443009 55443009 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55443009 55443009 CCDC88A 2 A A G 11 NLRC5 84166 genome.wustl.edu 36 16 55656696 55656696 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55656696 55656696 NLRC5 16 G G T 36 GLI1 2735 genome.wustl.edu 36 12 56150686 56150686 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56150686 56150686 GLI1 12 T T A 51 GLYATL2 219970 genome.wustl.edu 36 11 58361098 58361098 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58361098 58361098 GLYATL2 11 T T G 63 ERN1 2081 genome.wustl.edu 36 17 59529239 59529239 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59529239 59529239 ERN1 17 C C G 26 CCDC87 55231 genome.wustl.edu 36 11 66116813 66116813 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66116813 66116813 CCDC87 11 T T A 51 COG1 9382 genome.wustl.edu 36 17 68708381 68708381 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68708381 68708381 COG1 17 C C G 19 PHKA1 5255 genome.wustl.edu 36 X 71747725 71747725 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71747725 71747725 PHKA1 23 G G A 40 ENSG00000188463 genome.wustl.edu 36 7 71923895 71923895 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71923895 71923895 ENSG00000188463 7 C C A 24 PAPD4 167153 genome.wustl.edu 36 5 79013584 79013584 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79013584 79013584 PAPD4 5 G G T 34 ZMIZ1 57178 genome.wustl.edu 36 10 80734929 80734929 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 80734929 80734929 ZMIZ1 10 C C A 28 NECAB2 54550 genome.wustl.edu 36 16 82592983 82592983 + Silent SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 82592983 82592983 NECAB2 16 C C T 20 LRRC50 123872 genome.wustl.edu 36 16 82761031 82761031 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82761031 82761031 LRRC50 16 C C A 30 MGAT4C 25834 genome.wustl.edu 36 12 84897722 84897722 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84897722 84897722 MGAT4C 12 T T C 61 ABHD2 11057 genome.wustl.edu 36 15 87520209 87520209 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87520209 87520209 ABHD2 15 G G C 46 STEAP2 261729 genome.wustl.edu 36 7 89697188 89697188 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89697188 89697188 STEAP2 7 T T A 56 SAMD9 54809 genome.wustl.edu 36 7 92571396 92571396 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92571396 92571396 SAMD9 7 C C A 25 MRPS5 64969 genome.wustl.edu 36 2 95116901 95116901 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 95116901 95116901 MRPS5 2 G G A 36 BDKRB2 624 genome.wustl.edu 36 14 95777581 95777581 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95777581 95777581 BDKRB2 14 G G A 43 ZNF169 169841 genome.wustl.edu 36 9 96102338 96102338 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96102338 96102338 ZNF169 9 G G C 34 DIAPH2 1730 genome.wustl.edu 36 X 96283423 96283423 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96283423 96283423 DIAPH2 23 T T C 55 CNNM4 26504 genome.wustl.edu 36 2 96828635 96828635 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96828635 96828635 CNNM4 2 G G A 38 ZNF498 221785 genome.wustl.edu 36 7 99065292 99065292 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99065292 99065292 ZNF498 7 C C G 23 MUC17 140453 genome.wustl.edu 36 7 100450151 100450151 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 100450151 100450151 MUC17 7 G G A 41 SPAG1 6674 genome.wustl.edu 36 8 101306630 101306630 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 101306630 101306630 SPAG1 8 C C A 29 NXF3 56000 genome.wustl.edu 36 X 102225081 102225081 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102225081 102225081 NXF3 23 G G T 36 OR13C5 138799 genome.wustl.edu 36 9 106401084 106401084 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106401084 106401084 OR13C5 9 C C A 21 NTNG1 22854 genome.wustl.edu 36 1 107669038 107669038 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 107669038 107669038 NTNG1 1 C C G 19 ZNF462 58499 genome.wustl.edu 36 9 108729525 108729525 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108729525 108729525 ZNF462 9 G G A 38 RBM15 64783 genome.wustl.edu 36 1 110689748 110689748 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 110689748 110689748 RBM15 1 G G A 48 OAS1 4938 genome.wustl.edu 36 12 111833292 111833292 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111833292 111833292 OAS1 12 G G A 37 PALM2-AKAP2 445815 genome.wustl.edu 36 9 111939521 111939521 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111939521 111939521 PALM2-AKAP2 9 G G C 39 C1orf183 55924 genome.wustl.edu 36 1 112071729 112071729 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112071729 112071729 C1orf183 1 G G C 43 ALPK1 80216 genome.wustl.edu 36 4 113572696 113572696 + Silent SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 113572696 113572696 ALPK1 4 C C T 24 AP4B1 10717 genome.wustl.edu 36 1 114245902 114245902 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114245902 114245902 AP4B1 1 A A C 14 HIPK1 204851 genome.wustl.edu 36 1 114284738 114284738 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 114284738 114284738 HIPK1 1 C C G 19 FBXW8 26259 genome.wustl.edu 36 12 115850266 115850266 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115850266 115850266 FBXW8 12 T T C 50 PHLDB1 23187 genome.wustl.edu 36 11 118007142 118007143 + Missense_Mutation DNP GC GC CT novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 GC GC Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation DNP 118007142 118007143 PHLDB1 11 GC GC CT 34 C7orf58 79974 genome.wustl.edu 36 7 120474195 120474195 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120474195 120474195 C7orf58 7 A A G 12 NCKAP5 344148 genome.wustl.edu 36 2 133258058 133258058 + Silent SNP A A T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 133258058 133258058 NCKAP5 2 A A T 11 KHDRBS3 10656 genome.wustl.edu 36 8 136726510 136726510 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 136726510 136726510 KHDRBS3 8 A A G 8 QSOX2 169714 genome.wustl.edu 36 9 138243061 138243061 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 138243061 138243061 QSOX2 9 G G T 33 TBXAS1 6916 genome.wustl.edu 36 7 139299719 139299719 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139299719 139299719 TBXAS1 7 C C G 30 PCDHGA5 56110 genome.wustl.edu 36 5 140726341 140726341 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140726341 140726341 PCDHGA5 5 T T G 62 PCDH12 51294 genome.wustl.edu 36 5 141311244 141311244 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 141311244 141311244 PCDH12 5 G G A 46 KEL 3792 genome.wustl.edu 36 7 142351606 142351606 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142351606 142351606 KEL 7 C C A 25 POLR3C 10623 genome.wustl.edu 36 1 144308882 144308882 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 144308882 144308882 POLR3C 1 G G A 37 FLG2 388698 genome.wustl.edu 36 1 150592525 150592525 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150592525 150592525 FLG2 1 T T C 51 GABRE 2564 genome.wustl.edu 36 X 150888815 150888815 + Silent SNP A A T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 150888815 150888815 GABRE 23 A A T 11 ZDHHC14 79683 genome.wustl.edu 36 6 157994585 157994585 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 157994585 157994585 ZDHHC14 6 C C G 25 LPA 4018 genome.wustl.edu 36 6 160930625 160930625 + Silent SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 160930625 160930625 LPA 6 G G T 35 KCNT2 343450 genome.wustl.edu 36 1 194634315 194634315 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 194634315 194634315 KCNT2 1 C C T 18 NRP2 8828 genome.wustl.edu 36 2 206349354 206349354 + Silent SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 206349354 206349354 NRP2 2 C C T 20 SLC11A1 6556 genome.wustl.edu 36 2 218962860 218962860 + Silent SNP C C T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 218962860 218962860 SLC11A1 2 C C T 26 CAPN10 11132 genome.wustl.edu 36 2 241182798 241182798 + Silent SNP A A G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 241182798 241182798 CAPN10 2 A A G 7 AHCTF1 25909 genome.wustl.edu 36 1 245080990 245080990 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245080990 245080990 AHCTF1 1 A A T 6 BRCA2 675 genome.wustl.edu 36 13 31835426 31835441 + Frame_Shift_Del DEL TGAGCGCAAATATATC TGAGCGCAAATATATC - novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 TGAGCGCAAATATATC TGAGCGCAAATATATC TGAGCGCAAATATATC - TGAGCGCAAATATATC TGAGCGCAAATATATC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 31835426 31835441 BRCA2 13 TGAGCGCAAATATATC TGAGCGCAAATATATC - 63 ENSG00000213731 0 genome.wustl.edu 36 5 90808219 90808220 + Splice_Site_Ins INS - - G novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_Ins INS 90808219 90808220 ENSG00000213731 5 - - G 63 IGSF9 57549 genome.wustl.edu 36 1 158166686 158166686 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158166686 158166686 IGSF9 1 G G A 39 YAP1 10413 genome.wustl.edu 36 11 101605876 101605876 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101605876 101605876 YAP1 11 T T A 60 FBLN5 10516 genome.wustl.edu 36 14 91417405 91417405 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91417405 91417405 FBLN5 14 G G C 33 TUBGCP4 27229 genome.wustl.edu 36 15 41455704 41455704 + Silent SNP T T C novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 41455704 41455704 TUBGCP4 15 T T C 51 CSPG4 1464 genome.wustl.edu 36 15 73756197 73756197 + Silent SNP G G A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73756197 73756197 CSPG4 15 G G A 37 RNF213 57674 genome.wustl.edu 36 17 75934734 75934734 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75934734 75934734 RNF213 17 G G T 36 HR 55806 genome.wustl.edu 36 8 22037258 22037258 + Silent SNP G A A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 22037258 22037258 HR 8 G A A 39 NR6A1 2649 genome.wustl.edu 36 9 126338213 126338213 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1481-01 TCGA-13-1481-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 126338213 126338213 NR6A1 9 C C A 32 KIAA1462 57608 genome.wustl.edu 36 10 30357215 30357216 + Frame_Shift_Del DEL CT CT - Unknown TCGA-13-1481-01 TCGA-13-1481-10 CT CT CT - CT CT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 30357215 30357216 KIAA1462 10 CT CT - 20 MKL2 57496 genome.wustl.edu 36 16 14142032 14142043 + In_Frame_Del DEL CTCAGAGTGAAG CTCAGAGTGAAG - Unknown TCGA-13-1481-01 TCGA-13-1481-10 CTCAGAGTGAAG CTCAGAGTGAAG CTCAGAGTGAAG - CTCAGAGTGAAG CTCAGAGTGAAG Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 14142032 14142043 MKL2 16 CTCAGAGTGAAG CTCAGAGTGAAG - 24 MUC16 94025 genome.wustl.edu 36 19 8854365 8854371 + Splice_Site_Del DEL CCGCTCA CCGCTCA - Unknown TCGA-13-1481-01 TCGA-13-1481-10 CCGCTCA CCGCTCA CCGCTCA - CCGCTCA CCGCTCA Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_Del DEL 8854365 8854371 MUC16 19 CCGCTCA CCGCTCA - 26 GCNT2 2651 genome.wustl.edu 36 6 10637524 10637532 + In_Frame_Del DEL GCGACGGAT GCGACGGAT - Unknown TCGA-13-1481-01 TCGA-13-1481-10 GCGACGGAT GCGACGGAT GCGACGGAT - GCGACGGAT GCGACGGAT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 10637524 10637532 GCNT2 6 GCGACGGAT GCGACGGAT - 42