Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TP53	7157	genome.wustl.edu	36	17	7518223	7518223	+	Splice_Site_SNP	SNP	C	T	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	7518223	7518223	TP53	17	C	T	T	18
PLIN2	123	genome.wustl.edu	36	9	19106373	19106373	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19106373	19106373	PLIN2	9	G	G	T	40
ACIN1	22985	genome.wustl.edu	36	14	22619588	22619588	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22619588	22619588	ACIN1	14	G	G	C	44
SGSM1	129049	genome.wustl.edu	36	22	23570895	23570895	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23570895	23570895	SGSM1	22	G	A	A	38
OXSM	54995	genome.wustl.edu	36	3	25808487	25808487	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	25808487	25808487	OXSM	3	C	C	G	24
NEK10	152110	genome.wustl.edu	36	3	27307153	27307153	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27307153	27307153	NEK10	3	C	C	T	19
ENSG00000169203	0	genome.wustl.edu	36	16	29404433	29404433	+	Missense_Mutation	SNP	C	G	G	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29404433	29404433	ENSG00000169203	16	C	G	G	17
CCDC129	223075	genome.wustl.edu	36	7	31584261	31584261	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	31584261	31584261	CCDC129	7	C	C	T	24
CSMD2	114784	genome.wustl.edu	36	1	33805984	33805984	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33805984	33805984	CSMD2	1	C	C	T	31
MCM5	4174	genome.wustl.edu	36	22	34143848	34143848	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	34143848	34143848	MCM5	22	G	T	T	36
FKBP5	2289	genome.wustl.edu	36	6	35712908	35712908	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	35712908	35712908	FKBP5	6	G	G	C	45
ANKRD27	84079	genome.wustl.edu	36	19	37814173	37814173	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	37814173	37814173	ANKRD27	19	G	G	A	37
THADA	63892	genome.wustl.edu	36	2	43373807	43373807	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	43373807	43373807	THADA	2	T	T	A	50
TTC38	55020	genome.wustl.edu	36	22	45056177	45056177	+	Silent	SNP	G	T	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	45056177	45056177	TTC38	22	G	T	T	37
DNAH1	25981	genome.wustl.edu	36	3	52363991	52363991	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	52363991	52363991	DNAH1	3	C	C	T	19
IL17RB	55540	genome.wustl.edu	36	3	53858764	53858764	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	53858764	53858764	IL17RB	3	G	G	A	41
HESX1	8820	genome.wustl.edu	36	3	57207985	57207985	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	57207985	57207985	HESX1	3	G	G	C	41
ZNF813	126017	genome.wustl.edu	36	19	58686366	58686366	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	58686366	58686366	ZNF813	19	G	G	A	36
MAP1B	4131	genome.wustl.edu	36	5	71525796	71525796	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	71525796	71525796	MAP1B	5	C	C	T	27
SNX33	257364	genome.wustl.edu	36	15	73729785	73729785	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	73729785	73729785	SNX33	15	G	G	A	33
ZZZ3	26009	genome.wustl.edu	36	1	77870816	77870816	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	77870816	77870816	ZZZ3	1	G	G	A	45
FAT3	120114	genome.wustl.edu	36	11	91725807	91725807	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	91725807	91725807	FAT3	11	C	C	T	27
NR1H4	9971	genome.wustl.edu	36	12	99454900	99454900	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	99454900	99454900	NR1H4	12	C	C	T	19
GNB2	2783	genome.wustl.edu	36	7	100113091	100113091	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100113091	100113091	GNB2	7	T	T	C	51
MLL	4297	genome.wustl.edu	36	11	117878814	117878814	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	117878814	117878814	MLL	11	A	A	G	13
WDR5B	54554	genome.wustl.edu	36	3	123616204	123616204	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	123616204	123616204	WDR5B	3	C	C	G	32
NUP205	23165	genome.wustl.edu	36	7	134920198	134920198	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	134920198	134920198	NUP205	7	A	A	T	9
ATP11C	286410	genome.wustl.edu	36	X	138678246	138678246	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	138678246	138678246	ATP11C	23	G	G	A	48
PCDHB9	56127	genome.wustl.edu	36	5	140548416	140548416	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140548416	140548416	PCDHB9	5	C	C	T	19
EPHA1	2041	genome.wustl.edu	36	7	142798911	142798911	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	142798911	142798911	EPHA1	7	G	G	C	40
SH3RF2	153769	genome.wustl.edu	36	5	145422254	145422254	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	145422254	145422254	SH3RF2	5	G	G	A	39
KIF4B	285643	genome.wustl.edu	36	5	154375363	154375363	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	154375363	154375363	KIF4B	5	C	C	A	17
ACCN4	55515	genome.wustl.edu	36	2	220108219	220108219	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	220108219	220108219	ACCN4	2	G	G	T	47
AGAP1	116987	genome.wustl.edu	36	2	236482206	236482206	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	236482206	236482206	AGAP1	2	C	C	T	19
RGS7	6000	genome.wustl.edu	36	1	239328677	239328677	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0912-01	TCGA-13-0912-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	239328677	239328677	RGS7	1	G	G	A	40
LLGL2	3993	genome.wustl.edu	36	17	71072149	71072163	+	In_Frame_Del	DEL	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-		Unknown	TCGA-13-0912-01	TCGA-13-0912-10	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	71072149	71072163	LLGL2	17	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	28
LLGL2	3993	genome.wustl.edu	36	17	71072159	71072159	+	In_Frame_Del	DEL	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-		Unknown	TCGA-13-0912-01	TCGA-13-0912-10	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	In_Frame_Del	DEL	71072159	71072159	LLGL2	17	CTTCACTGTCCTCAC	CTTCACTGTCCTCAC	-	24