Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CAMTA1 23261 broad.mit.edu 36 1 7715179 7715179 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7715179 7715179 CAMTA1 1 A A C 1 FMN2 56776 broad.mit.edu 36 1 238322206 238322206 + Silent SNP C C G rs71168893 Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 238322206 238322206 FMN2 1 C C G 27 ARL5B 221079 broad.mit.edu 36 10 18995521 18995521 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 18995521 18995521 ARL5B 10 A A G 4 MS4A3 932 broad.mit.edu 36 11 59591034 59591034 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59591034 59591034 MS4A3 11 C C A 28 RPS6KB2 6199 broad.mit.edu 36 11 66957080 66957080 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 66957080 66957080 RPS6KB2 11 T T C 52 FSCB 84075 broad.mit.edu 36 14 44044601 44044601 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 44044601 44044601 FSCB 14 T T A 54 LCTL 197021 broad.mit.edu 36 15 64637179 64637179 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64637179 64637179 LCTL 15 C C G 17 PITPNM3 83394 broad.mit.edu 36 17 6314378 6314378 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6314378 6314378 PITPNM3 17 T T G 59 NETO1 81832 broad.mit.edu 36 18 68677194 68677194 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 68677194 68677194 NETO1 18 C C A 21 OR1I1 126370 broad.mit.edu 36 19 15058970 15058970 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 15058970 15058970 OR1I1 19 C C G 24 PEG3 5178 broad.mit.edu 36 19 62020629 62020629 + Silent SNP T T C novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 62020629 62020629 PEG3 19 T T C 63 LRP2 4036 broad.mit.edu 36 2 169771293 169771293 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 169771293 169771293 LRP2 2 A A G 10 CALCRL 10203 broad.mit.edu 36 2 187925271 187925271 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 187925271 187925271 CALCRL 2 C C T 19 AGAP1 116987 broad.mit.edu 36 2 236372871 236372871 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 236372871 236372871 AGAP1 2 G G A 38 GPR35 2859 broad.mit.edu 36 2 241218213 241218213 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 241218213 241218213 GPR35 2 C C G 32 TOP3B 8940 broad.mit.edu 36 22 20654768 20654768 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20654768 20654768 TOP3B 22 G G T 34 APOL1 8542 broad.mit.edu 36 22 34991401 34991401 + Silent SNP C C T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34991401 34991401 APOL1 22 C C T 31 CAMKV 79012 broad.mit.edu 36 3 49873963 49873963 + Silent SNP C C T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 49873963 49873963 CAMKV 3 C C T 23 CD47 961 broad.mit.edu 36 3 109281704 109281704 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 109281704 109281704 CD47 3 G G C 41 RAP1GDS1 5910 broad.mit.edu 36 4 99544754 99544754 + Silent SNP T T C novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 99544754 99544754 RAP1GDS1 4 T T C 62 FAM134B 54463 broad.mit.edu 36 5 16532054 16532054 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16532054 16532054 FAM134B 5 A A G 4 PCDHGA2 56113 broad.mit.edu 36 5 140698942 140698942 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140698942 140698942 PCDHGA2 5 C C T 28 SOSTDC1 25928 broad.mit.edu 36 7 16471749 16471749 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16471749 16471749 SOSTDC1 7 A A G 1 ATP6AP1 537 broad.mit.edu 36 X 153315772 153315772 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 G T G G Unknown Valid Somatic x x 454_PCR_WGA x Broad Missense_Mutation SNP 153315772 153315772 ATP6AP1 23 G G T 42 NBPF16 728936 broad.mit.edu 36 1 147019954 147019960 + Frame_Shift_Del DEL TTATCTT - TTATCTT novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 147019954 147019960 NBPF16 1 TTATCTT - TTATCTT 52 RTL1 388015 broad.mit.edu 36 14 100420423 100420424 + In_Frame_Ins INS - TCT - novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Ins INS 100420423 100420424 RTL1 14 - TCT - 28 TP53 7157 broad.mit.edu 36 17 7520281 7520285 + Frame_Shift_Del DEL ATCAA - ATCAA novel Unknown TCGA-13-0911-01 TCGA-13-0911-10 - ATCAA ATCAA ATCAA Unknown Valid Somatic Phase_I Capture Illumina GAIIx Broad Frame_Shift_Del DEL 7520281 7520285 TP53 17 ATCAA - ATCAA 8