Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RNF144A 9781 genome.wustl.edu 36 2 7054521 7054521 + Silent SNP A A C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7054521 7054521 RNF144A 2 A A C 3 ACSM4 341392 genome.wustl.edu 36 12 7354409 7354409 + Silent SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7354409 7354409 ACSM4 12 C C T 32 TAS2R43 259289 genome.wustl.edu 36 12 11135240 11135240 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11135240 11135240 TAS2R43 12 G C C 34 RPL32 6161 genome.wustl.edu 36 3 12855849 12855849 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 12855849 12855849 RPL32 3 T T A 63 BRD4 23476 genome.wustl.edu 36 19 15240765 15240765 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15240765 15240765 BRD4 19 C C T 17 TUBA3C 7278 genome.wustl.edu 36 13 18649364 18649364 + Silent SNP C T T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 18649364 18649364 TUBA3C 13 C T T 23 SLC17A6 57084 genome.wustl.edu 36 11 22354124 22354124 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22354124 22354124 SLC17A6 11 C C A 20 COL16A1 1307 genome.wustl.edu 36 1 31919092 31919092 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 31919092 31919092 COL16A1 1 C C T 18 NCOA6 23054 genome.wustl.edu 36 20 32792313 32792313 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32792313 32792313 NCOA6 20 G G T 41 ENSG00000214613 genome.wustl.edu 36 16 32928349 32928349 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 32928349 32928349 ENSG00000214613 16 C C T 23 ZNF770 54989 genome.wustl.edu 36 15 33061340 33061340 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33061340 33061340 ZNF770 15 G G A 41 ASH2L 9070 genome.wustl.edu 36 8 38083730 38083730 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38083730 38083730 ASH2L 8 C C G 20 KIRREL2 84063 genome.wustl.edu 36 19 41043070 41043070 + Silent SNP A A G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 41043070 41043070 KIRREL2 19 A A G 6 LOC285346 285346 genome.wustl.edu 36 3 44516194 44516194 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44516194 44516194 LOC285346 3 C C T 17 KIF15 56992 genome.wustl.edu 36 3 44842876 44842876 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44842876 44842876 KIF15 3 G G C 45 CYP2F1 1572 genome.wustl.edu 36 19 46319722 46319722 + Silent SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 46319722 46319722 CYP2F1 19 C C T 26 C1orf190 541468 genome.wustl.edu 36 1 46441791 46441791 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46441791 46441791 C1orf190 1 G G C 45 OR4C5 genome.wustl.edu 36 11 48344066 48344066 + Silent SNP G G A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48344066 48344066 OR4C5 11 G G A 40 ATRIP 84126 genome.wustl.edu 36 3 48477017 48477017 + Silent SNP A A G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48477017 48477017 ATRIP 3 A A G 11 FAF1 11124 genome.wustl.edu 36 1 50713925 50713925 + Silent SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 50713925 50713925 FAF1 1 G G C 35 NISCH 11188 genome.wustl.edu 36 3 52497361 52497361 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52497361 52497361 NISCH 3 G G A 38 MAGEH1 28986 genome.wustl.edu 36 X 55496032 55496032 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55496032 55496032 MAGEH1 23 C C T 25 MYH14 79784 genome.wustl.edu 36 19 55496813 55496813 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55496813 55496813 MYH14 19 G T T 33 OR5AS1 219447 genome.wustl.edu 36 11 55555264 55555264 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55555264 55555264 OR5AS1 11 G G C 34 OR5B2 390190 genome.wustl.edu 36 11 57946621 57946621 + Silent SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 57946621 57946621 OR5B2 11 C C T 24 ABHD6 57406 genome.wustl.edu 36 3 58254519 58254519 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 58254519 58254519 ABHD6 3 A A G 3 PGM1 5236 genome.wustl.edu 36 1 63874627 63874627 + Silent SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63874627 63874627 PGM1 1 C C T 21 NLGN3 54413 genome.wustl.edu 36 X 70304178 70304178 + Nonsense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 70304178 70304178 NLGN3 23 C C G 20 SLCO5A1 81796 genome.wustl.edu 36 8 70836541 70836541 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70836541 70836541 SLCO5A1 8 A A G 4 ODAM 54959 genome.wustl.edu 36 4 71100839 71100839 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71100839 71100839 ODAM 4 T T G 55 KIAA1274 27143 genome.wustl.edu 36 10 71961158 71961158 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71961158 71961158 KIAA1274 10 T T A 54 RNF169 254225 genome.wustl.edu 36 11 74224512 74224512 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74224512 74224512 RNF169 11 A A G 8 BAHCC1 57597 genome.wustl.edu 36 17 77024851 77024851 + Silent SNP G A A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 77024851 77024851 BAHCC1 17 G A A 39 NOX4 50507 genome.wustl.edu 36 11 88863277 88863277 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88863277 88863277 NOX4 11 C C A 21 GPR98 84059 genome.wustl.edu 36 5 89960995 89960995 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89960995 89960995 GPR98 5 C C G 32 FGD6 55785 genome.wustl.edu 36 12 94002491 94002491 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94002491 94002491 FGD6 12 C C G 32 NT5DC3 51559 genome.wustl.edu 36 12 102732871 102732871 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102732871 102732871 NT5DC3 12 G G A 40 RSPO2 340419 genome.wustl.edu 36 8 109039658 109039658 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109039658 109039658 RSPO2 8 C C T 21 BAG3 9531 genome.wustl.edu 36 10 121426356 121426356 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121426356 121426356 BAG3 10 G G A 43 DTX3L 151636 genome.wustl.edu 36 3 123770782 123770782 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123770782 123770782 DTX3L 3 A A C 13 GPR133 283383 genome.wustl.edu 36 12 130054769 130054769 + Silent SNP C A A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 130054769 130054769 GPR133 12 C A A 30 C6orf192 116843 genome.wustl.edu 36 6 133142141 133142141 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133142141 133142141 C6orf192 6 C C G 21 FAM135B 51059 genome.wustl.edu 36 8 139233226 139233226 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139233226 139233226 FAM135B 8 T T C 55 SLC27A3 11000 genome.wustl.edu 36 1 152017344 152017344 + Silent SNP C C A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 152017344 152017344 SLC27A3 1 C C A 28 ITK 3702 genome.wustl.edu 36 5 156570954 156570954 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 156570954 156570954 ITK 5 G G C 33 GABRA1 2554 genome.wustl.edu 36 5 161250636 161250636 + Splice_Site_SNP SNP T T A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 161250636 161250636 GABRA1 5 T T A 57 SLIT3 6586 genome.wustl.edu 36 5 168145503 168145503 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 168145503 168145503 SLIT3 5 A A T 10 RNF130 55819 genome.wustl.edu 36 5 179337838 179337838 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179337838 179337838 RNF130 5 C C G 32 PPP1R15B 84919 genome.wustl.edu 36 1 202646965 202646965 + Silent SNP C C A novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 202646965 202646965 PPP1R15B 1 C C A 25 NDUFS1 4719 genome.wustl.edu 36 2 206711533 206711533 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 206711533 206711533 NDUFS1 2 A A C 11 OR2L8 391190 genome.wustl.edu 36 1 246179561 246179561 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 246179561 246179561 OR2L8 1 G G C 40 CIC 23152 genome.wustl.edu 36 19 47488302 47488314 + Frame_Shift_Del DEL GTGCAGTCAGCGG GTGCAGTCAGCGG - novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 GTGCAGTCAGCGG GTGCAGTCAGCGG GTGCAGTCAGCGG - GTGCAGTCAGCGG GTGCAGTCAGCGG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 47488302 47488314 CIC 19 GTGCAGTCAGCGG GTGCAGTCAGCGG - 48 MCF2L2 23101 genome.wustl.edu 36 3 184416547 184416556 + Frame_Shift_Del DEL TGCTGAATCT TGCTGAATCT - novel Unknown TCGA-13-0897-01 TCGA-13-0897-10 TGCTGAATCT TGCTGAATCT TGCTGAATCT - TGCTGAATCT TGCTGAATCT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 184416547 184416556 MCF2L2 3 TGCTGAATCT TGCTGAATCT - 51 CROCC 9696 genome.wustl.edu 36 1 17168359 17168359 + Silent SNP G G A Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 17168359 17168359 CROCC 1 G G A 43 JARID2 3720 genome.wustl.edu 36 6 15595579 15595579 + Nonsense_Mutation SNP G G T Unknown TCGA-13-0897-01 TCGA-13-0897-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 15595579 15595579 JARID2 6 G G T 33 MFAP3L 9848 genome.wustl.edu 36 4 171163500 171163504 + Frame_Shift_Del DEL GTGCT GTGCT - Unknown TCGA-13-0897-01 TCGA-13-0897-10 GTGCT GTGCT GTGCT - GTGCT GTGCT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 171163500 171163504 MFAP3L 4 GTGCT GTGCT - 36 MFAP3L 9848 genome.wustl.edu 36 4 171163510 171163517 + Frame_Shift_Del DEL TCACACTC TCACACTC - Unknown TCGA-13-0897-01 TCGA-13-0897-10 TCACACTC TCACACTC TCACACTC - TCACACTC TCACACTC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 171163510 171163517 MFAP3L 4 TCACACTC TCACACTC - 58 MFAP3L 9848 genome.wustl.edu 36 4 171163521 171163525 + Frame_Shift_Del DEL GCGGT GCGGT - Unknown TCGA-13-0897-01 TCGA-13-0897-10 GCGGT GCGGT GCGGT - GCGGT GCGGT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 171163521 171163525 MFAP3L 4 GCGGT GCGGT - 34