Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ATRX	546	hgsc.bcm.edu	36	X	76664503	76664503	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76664503	76664503	ATRX	23	T	T	C	60
C14orf159	80017	hgsc.bcm.edu	36	14	90709423	90709423	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	90709423	90709423	C14orf159	14	G	G	T	46
CCNA1	8900	hgsc.bcm.edu	36	13	35913329	35913329	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35913329	35913329	CCNA1	13	T	T	A	56
ERBB2	2064	hgsc.bcm.edu	36	17	35121734	35121734	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	35121734	35121734	ERBB2	17	C	C	T	30
FAM123B	139285	hgsc.bcm.edu	36	X	63329263	63329263	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	63329263	63329263	FAM123B	23	G	G	A	45
FAM160A1	729830	hgsc.bcm.edu	36	4	152779297	152779297	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152779297	152779297	FAM160A1	4	G	G	A	42
FBXO3	26273	hgsc.bcm.edu	36	11	33725339	33725339	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33725339	33725339	FBXO3	11	A	A	T	9
GUCY2F	2986	hgsc.bcm.edu	36	X	108538967	108538967	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	108538967	108538967	GUCY2F	23	A	A	G	2
HMCN1	83872	hgsc.bcm.edu	36	1	184380031	184380031	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	184380031	184380031	HMCN1	1	G	G	A	40
HRNR	388697	hgsc.bcm.edu	36	1	150462353	150462353	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	150462353	150462353	HRNR	1	T	T	-	52
IFT140	9742	hgsc.bcm.edu	36	16	1515306	1515306	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1515306	1515306	IFT140	16	G	G	A	39
KDM2A	22992	hgsc.bcm.edu	36	11	66739976	66739976	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66739976	66739976	KDM2A	11	C	C	T	29
KIAA1409	57578	hgsc.bcm.edu	36	14	93190053	93190053	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	93190053	93190053	KIAA1409	14	C	C	T	19
LRP1	4035	hgsc.bcm.edu	36	12	55857204	55857204	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	55857204	55857204	LRP1	12	G	G	A	37
MAP7D2	256714	hgsc.bcm.edu	36	X	19953033	19953033	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	19953033	19953033	MAP7D2	23	C	C	T	30
MAPK14	1432	hgsc.bcm.edu	36	6	36178396	36178396	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	36178396	36178396	MAPK14	6	A	A	T	4
MIB1	57534	hgsc.bcm.edu	36	18	17632062	17632062	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17632062	17632062	MIB1	18	G	G	A	37
MOCOS	55034	hgsc.bcm.edu	36	18	32102512	32102512	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32102512	32102512	MOCOS	18	C	C	G	24
MYCBP2	23077	hgsc.bcm.edu	36	13	76593607	76593607	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76593607	76593607	MYCBP2	13	G	G	A	33
PDCD6IP	10015	hgsc.bcm.edu	36	3	33852627	33852627	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33852627	33852627	PDCD6IP	3	C	C	G	24
PDE4DIP	9659	hgsc.bcm.edu	36	1	143623633	143623633	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	143623633	143623633	PDE4DIP	1	C	C	G	18
PPP2R5B	5526	hgsc.bcm.edu	36	11	64455917	64455917	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	64455917	64455917	PPP2R5B	11	G	G	T	44
SELP	6403	hgsc.bcm.edu	36	1	167848917	167848917	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	167848917	167848917	SELP	1	G	G	T	33
SGSM2	9905	hgsc.bcm.edu	36	17	2212896	2212896	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2212896	2212896	SGSM2	17	A	A	C	3
SLC2A1	6513	hgsc.bcm.edu	36	1	43165445	43165445	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	43165445	43165445	SLC2A1	1	A	A	G	3
SPINK5	11005	hgsc.bcm.edu	36	5	147480068	147480068	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	147480068	147480068	SPINK5	5	A	A	-	9
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	G	A	38
TXNDC6	347736	hgsc.bcm.edu	36	3	139505158	139505158	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	139505158	139505158	TXNDC6	3	C	C	T	26
USP4	7375	hgsc.bcm.edu	36	3	49312914	49312914	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	49312914	49312914	USP4	3	C	C	G	32
XIRP2	129446	hgsc.bcm.edu	36	2	167815906	167815906	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	167815906	167815906	XIRP2	2	G	G	A	33
ZCCHC6	79670	hgsc.bcm.edu	36	9	88127674	88127674	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88127674	88127674	ZCCHC6	9	T	T	A	64
ZNF407	55628	hgsc.bcm.edu	36	18	70472001	70472001	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70472001	70472001	ZNF407	18	A	A	G	12
ZNF681	148213	hgsc.bcm.edu	36	19	23719582	23719583	+	Frame_Shift_Del	DEL	CA	CA	-	novel	Unknown	TCGA-13-0889-01	TCGA-13-0889-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	23719582	23719583	ZNF681	19	CA	CA	-	21