Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CTBP1 1487 genome.wustl.edu 36 4 1197364 1197364 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1197364 1197364 CTBP1 4 G G T 43 ADI1 55256 genome.wustl.edu 36 2 3481851 3481851 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3481851 3481851 ADI1 2 T T C 62 USP6 9098 genome.wustl.edu 36 17 4976318 4976318 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4976318 4976318 USP6 17 A A T 12 PITPNM3 83394 genome.wustl.edu 36 17 6312289 6312289 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6312289 6312289 PITPNM3 17 G G A 38 TP53 7157 genome.wustl.edu 36 17 7518937 7518937 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7518937 7518937 TP53 17 G G A 37 STK33 65975 genome.wustl.edu 36 11 8442866 8442866 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8442866 8442866 STK33 11 G G A 40 RGL3 57139 genome.wustl.edu 36 19 11387798 11387798 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 11387798 11387798 RGL3 19 C C T 21 CTNND2 1501 genome.wustl.edu 36 5 11450167 11450167 + Silent SNP T T C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 11450167 11450167 CTNND2 5 T T C 54 EMR2 30817 genome.wustl.edu 36 19 14723306 14723306 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14723306 14723306 EMR2 19 C C A 28 RIOK3 8780 genome.wustl.edu 36 18 19313300 19313300 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19313300 19313300 RIOK3 18 A A C 5 RNASE11 122651 genome.wustl.edu 36 14 20121957 20121957 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20121957 20121957 RNASE11 14 T T A 53 RALGAPA2 57186 genome.wustl.edu 36 20 20533856 20533856 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20533856 20533856 RALGAPA2 20 T T A 52 ZNF521 25925 genome.wustl.edu 36 18 21060155 21060155 + Silent SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21060155 21060155 ZNF521 18 A A T 13 IGL@ genome.wustl.edu 36 22 21465262 21465262 + Missense_Mutation SNP A T T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A T T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21465262 21465262 IGL@ 22 A T T 6 PABPN1 8106 genome.wustl.edu 36 14 22863304 22863304 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22863304 22863304 PABPN1 14 G G A 47 STK31 56164 genome.wustl.edu 36 7 23777191 23777191 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23777191 23777191 STK31 7 A A G 15 MAGEB5 347541 genome.wustl.edu 36 X 26145962 26145962 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26145962 26145962 MAGEB5 23 C C A 26 CDH6 1004 genome.wustl.edu 36 5 31303462 31303462 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31303462 31303462 CDH6 5 G G C 41 EHMT2 10919 genome.wustl.edu 36 6 31972245 31972245 + Missense_Mutation SNP G A A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G A A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31972245 31972245 EHMT2 6 G A A 41 ETV7 51513 genome.wustl.edu 36 6 36451665 36451665 + Missense_Mutation SNP G T T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36451665 36451665 ETV7 6 G T T 35 KIF21A 55605 genome.wustl.edu 36 12 38012445 38012445 + Silent SNP T T C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38012445 38012445 KIF21A 12 T T C 60 EGFLAM 133584 genome.wustl.edu 36 5 38474280 38474280 + Silent SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38474280 38474280 EGFLAM 5 C C T 26 SGSM3 27352 genome.wustl.edu 36 22 39135225 39135225 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39135225 39135225 SGSM3 22 G C C 41 PTCRA 171558 genome.wustl.edu 36 6 42998844 42998844 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42998844 42998844 PTCRA 6 C C A 18 MYLK3 91807 genome.wustl.edu 36 16 45304156 45304156 + Silent SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 45304156 45304156 MYLK3 16 G G A 37 ZMYND8 23613 genome.wustl.edu 36 20 45324569 45324569 + Silent SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 45324569 45324569 ZMYND8 20 G G A 35 PRKCE 5581 genome.wustl.edu 36 2 46059636 46059636 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46059636 46059636 PRKCE 2 A A C 7 FAM35B2 genome.wustl.edu 36 10 46836889 46836889 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46836889 46836889 FAM35B2 10 G G C 45 C7orf57 136288 genome.wustl.edu 36 7 48047516 48047516 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48047516 48047516 C7orf57 7 C C T 30 OR4C2P genome.wustl.edu 36 11 48398865 48398865 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48398865 48398865 OR4C2P 11 C C T 22 IRGC 56269 genome.wustl.edu 36 19 48914940 48914940 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48914940 48914940 IRGC 19 C C A 20 BIN2 51411 genome.wustl.edu 36 12 49982775 49982775 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49982775 49982775 BIN2 12 C C T 31 HUWE1 10075 genome.wustl.edu 36 X 53594876 53594876 + Splice_Site_SNP SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 53594876 53594876 HUWE1 23 C C A 24 DGKA 1606 genome.wustl.edu 36 12 54633437 54633437 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54633437 54633437 DGKA 12 A A T 2 EFEMP1 2202 genome.wustl.edu 36 2 55998858 55998858 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55998858 55998858 EFEMP1 2 C C A 24 POLR2B 5431 genome.wustl.edu 36 4 57578609 57578609 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57578609 57578609 POLR2B 4 A A T 14 TM2D1 83941 genome.wustl.edu 36 1 61963351 61963351 + Silent SNP A C C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A C C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61963351 61963351 TM2D1 1 A C C 7 DOCK7 85440 genome.wustl.edu 36 1 62892020 62892020 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62892020 62892020 DOCK7 1 C C G 32 SYNE2 23224 genome.wustl.edu 36 14 63750739 63750739 + Silent SNP T T G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63750739 63750739 SYNE2 14 T T G 56 CD180 4064 genome.wustl.edu 36 5 66516124 66516124 + Silent SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 66516124 66516124 CD180 5 A A G 12 SDK2 54549 genome.wustl.edu 36 17 68922422 68922422 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68922422 68922422 SDK2 17 C T T 27 UGT2B17 7367 genome.wustl.edu 36 4 69116210 69116210 + Silent SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 69116210 69116210 UGT2B17 4 A A G 7 THAP2 83591 genome.wustl.edu 36 12 70344567 70344567 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70344567 70344567 THAP2 12 A A G 4 MYST4 23522 genome.wustl.edu 36 10 76458706 76458706 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76458706 76458706 MYST4 10 A A G 9 CMYA5 202333 genome.wustl.edu 36 5 79064909 79064909 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79064909 79064909 CMYA5 5 T T G 59 C9orf79 286234 genome.wustl.edu 36 9 89690173 89690173 + Silent SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89690173 89690173 C9orf79 9 C C A 26 AKAP9 10142 genome.wustl.edu 36 7 91560442 91560442 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 91560442 91560442 AKAP9 7 G G T 41 IPPK 64768 genome.wustl.edu 36 9 94440220 94440220 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94440220 94440220 IPPK 9 C C T 23 ENSG00000168992 0 genome.wustl.edu 36 2 95576864 95576864 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95576864 95576864 ENSG00000168992 2 C C A 22 ENSG00000144188 0 genome.wustl.edu 36 2 97055666 97055666 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97055666 97055666 ENSG00000144188 2 A A T 4 CHD1 1105 genome.wustl.edu 36 5 98264662 98264662 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98264662 98264662 CHD1 5 C A A 32 ZSCAN21 7589 genome.wustl.edu 36 7 99499348 99499348 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99499348 99499348 ZSCAN21 7 T T A 52 RAGE 5891 genome.wustl.edu 36 14 101765638 101765638 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101765638 101765638 RAGE 14 G G C 41 C12orf42 374470 genome.wustl.edu 36 12 102220460 102220460 + Silent SNP G A A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 102220460 102220460 C12orf42 12 G A A 39 BTRC 8945 genome.wustl.edu 36 10 103211767 103211767 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103211767 103211767 BTRC 10 C C T 22 MGEA5 10724 genome.wustl.edu 36 10 103536257 103536257 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 103536257 103536257 MGEA5 10 C C A 29 MUM1L1 139221 genome.wustl.edu 36 X 105337315 105337315 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105337315 105337315 MUM1L1 23 A A T 3 STXBP3 6814 genome.wustl.edu 36 1 109123502 109123502 + Silent SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 109123502 109123502 STXBP3 1 G G C 45 IFT57 55081 genome.wustl.edu 36 3 109415503 109415503 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109415503 109415503 IFT57 3 C C T 32 UBL4B 164153 genome.wustl.edu 36 1 110456870 110456870 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110456870 110456870 UBL4B 1 A A G 4 KCNA2 3737 genome.wustl.edu 36 1 110948093 110948093 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110948093 110948093 KCNA2 1 C C G 32 NAA25 80018 genome.wustl.edu 36 12 111000884 111000884 + Silent SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 111000884 111000884 NAA25 12 C C T 25 ST7 7982 genome.wustl.edu 36 7 116561414 116561414 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116561414 116561414 ST7 7 A A T 9 SORL1 6653 genome.wustl.edu 36 11 120896761 120896761 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120896761 120896761 SORL1 11 A A G 4 GPR109A 338442 genome.wustl.edu 36 12 121753042 121753042 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121753042 121753042 GPR109A 12 C C T 19 HAS2 3037 genome.wustl.edu 36 8 122710346 122710346 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122710346 122710346 HAS2 8 C C A 26 IQUB 154865 genome.wustl.edu 36 7 122939603 122939603 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122939603 122939603 IQUB 7 C C A 28 MYLK 4638 genome.wustl.edu 36 3 124909399 124909399 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124909399 124909399 MYLK 3 A A T 11 SLC12A8 84561 genome.wustl.edu 36 3 126392010 126392010 + Missense_Mutation SNP T G G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 126392010 126392010 SLC12A8 3 T G G 51 PTPRK 5796 genome.wustl.edu 36 6 128339552 128339552 + Silent SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128339552 128339552 PTPRK 6 A A T 3 GPR101 83550 genome.wustl.edu 36 X 135941269 135941269 + Missense_Mutation SNP G C C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135941269 135941269 GPR101 23 G C C 44 CHD1L 9557 genome.wustl.edu 36 1 145233735 145233735 + Splice_Site_SNP SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 145233735 145233735 CHD1L 1 G G A 33 EPC2 26122 genome.wustl.edu 36 2 149255757 149255757 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149255757 149255757 EPC2 2 G G T 46 GALNTL5 168391 genome.wustl.edu 36 7 151342712 151342712 + Silent SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151342712 151342712 GALNTL5 7 A A G 10 LRBA 987 genome.wustl.edu 36 4 151490617 151490617 + Missense_Mutation SNP T C C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151490617 151490617 LRBA 4 T C C 52 NEB 4703 genome.wustl.edu 36 2 152055155 152055155 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152055155 152055155 NEB 2 C C T 22 KCNAB1 7881 genome.wustl.edu 36 3 157321283 157321283 + Silent SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 157321283 157321283 KCNAB1 3 G G T 46 SLC7A14 57709 genome.wustl.edu 36 3 171727348 171727348 + Silent SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 171727348 171727348 SLC7A14 3 G G T 47 PAPPA2 60676 genome.wustl.edu 36 1 174931581 174931581 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 174931581 174931581 PAPPA2 1 T T G 59 CEP350 9857 genome.wustl.edu 36 1 178328483 178328483 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178328483 178328483 CEP350 1 C C G 21 TTN 7273 genome.wustl.edu 36 2 179285426 179285426 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179285426 179285426 TTN 2 C C G 32 CCDC39 339829 genome.wustl.edu 36 3 181860218 181860218 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 181860218 181860218 CCDC39 3 C C A 30 DUSP19 142679 genome.wustl.edu 36 2 183668509 183668509 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 183668509 183668509 DUSP19 2 T T C 62 ATP11B 23200 genome.wustl.edu 36 3 184066902 184066902 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184066902 184066902 ATP11B 3 G G T 35 ZNF804A 91752 genome.wustl.edu 36 2 185508899 185508899 + Silent SNP T T A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 185508899 185508899 ZNF804A 2 T T A 53 KIF21B 23046 genome.wustl.edu 36 1 199225768 199225768 + Silent SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 199225768 199225768 KIF21B 1 G G C 39 AOX1 316 genome.wustl.edu 36 2 201182370 201182370 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 201182370 201182370 AOX1 2 T T G 56 TUBA4A 7277 genome.wustl.edu 36 2 219824013 219824013 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219824013 219824013 TUBA4A 2 C C G 32 ITPKB 3707 genome.wustl.edu 36 1 224896358 224896358 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 224896358 224896358 ITPKB 1 C C T 26 TARBP1 6894 genome.wustl.edu 36 1 232620564 232620564 + Silent SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 232620564 232620564 TARBP1 1 A A G 7 UGT1A10 54575 genome.wustl.edu 36 2 234210018 234210018 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 234210018 234210018 UGT1A10 2 C C G 20 AHCTF1 25909 genome.wustl.edu 36 1 245087640 245087640 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245087640 245087640 AHCTF1 1 A A T 3 SFXN3 81855 genome.wustl.edu 36 10 102786216 102786231 + Splice_Site_Del DEL GGCTTTTCCACCCACA GGCTTTTCCACCCACA - novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 GGCTTTTCCACCCACA GGCTTTTCCACCCACA GGCTTTTCCACCCACA - GGCTTTTCCACCCACA GGCTTTTCCACCCACA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_Del DEL 102786216 102786231 SFXN3 10 GGCTTTTCCACCCACA GGCTTTTCCACCCACA - 47 BRCA1 672 genome.wustl.edu 36 17 38529570 38529571 + Frame_Shift_Del DEL CT CT - novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 CT - CT - CT - Unknown Valid Germline Phase_III Capture 454_PCR_WGA;Sanger_PCR_WGA dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 38529570 38529571 BRCA1 17 CT CT - 6 SLC9A1 6548 genome.wustl.edu 36 1 27300285 27300285 + Silent SNP G A A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 27300285 27300285 SLC9A1 1 G A A 34 ARHGEF16 27237 genome.wustl.edu 36 1 3379574 3379574 + Silent SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3379574 3379574 ARHGEF16 1 G G A 34 CCKBR 887 genome.wustl.edu 36 11 6248984 6248984 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6248984 6248984 CCKBR 11 G G C 42 MYO7A 4647 genome.wustl.edu 36 11 76591795 76591795 + Missense_Mutation SNP G G C Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76591795 76591795 MYO7A 11 G G C 35 CACNA1C 775 genome.wustl.edu 36 12 2658874 2658874 + Missense_Mutation SNP G G T Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2658874 2658874 CACNA1C 12 G G T 42 SLC15A1 6564 genome.wustl.edu 36 13 98158993 98158993 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98158993 98158993 SLC15A1 13 A A G 10 CILP 8483 genome.wustl.edu 36 15 63286375 63286375 + Silent SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 63286375 63286375 CILP 15 C C A 21 ABCC1 4363 genome.wustl.edu 36 16 16080820 16080820 + Missense_Mutation SNP G G C Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16080820 16080820 ABCC1 16 G G C 43 PRSS27 83886 genome.wustl.edu 36 16 2704190 2704191 + Missense DNP CC AG AG novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 2704190 2704191 PRSS27 16 CC AG AG 30 LOC100131582 genome.wustl.edu 36 16 644991 644991 + Missense_Mutation SNP C T T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 644991 644991 LOC100131582 16 C T T 20 FZD2 2535 genome.wustl.edu 36 17 39992127 39992127 + Silent SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39992127 39992127 FZD2 17 G G A 38 BCAT2 587 genome.wustl.edu 36 19 54001641 54001641 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54001641 54001641 BCAT2 19 G G T 43 COL5A2 1290 genome.wustl.edu 36 2 189607183 189607183 + Missense_Mutation SNP C C T Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 189607183 189607183 COL5A2 2 C C T 23 LOC388931 388931 genome.wustl.edu 36 2 24098077 24098077 + Missense_Mutation SNP T T A Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24098077 24098077 LOC388931 2 T T A 50 PLXNB2 23654 genome.wustl.edu 36 22 49063643 49063643 + Missense_Mutation SNP C A A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49063643 49063643 PLXNB2 22 C A A 30 CRELD1 78987 genome.wustl.edu 36 3 9960176 9960176 + Missense_Mutation SNP T T A Unknown TCGA-13-0887-01 TCGA-13-0887-10 T T T A T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9960176 9960176 CRELD1 3 T T A 50 SORCS2 57537 genome.wustl.edu 36 4 7756820 7756820 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7756820 7756820 SORCS2 4 G G A 43 RIMS1 22999 genome.wustl.edu 36 6 73032412 73032412 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73032412 73032412 RIMS1 6 A A T 15 RAPGEF1 2889 genome.wustl.edu 36 9 133454022 133454022 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133454022 133454022 RAPGEF1 9 C C A 22 RCN3 57333 genome.wustl.edu 36 19 54729337 54729337 + Silent SNP C C T Unknown TCGA-13-0887-01 TCGA-13-0887-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 54729337 54729337 RCN3 19 C C T 31 OR7G1 125962 genome.wustl.edu 36 19 9086597 9086597 + Silent SNP G G T Unknown TCGA-13-0887-01 TCGA-13-0887-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 9086597 9086597 OR7G1 19 G G T 41