Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ERC1 23085 genome.wustl.edu 36 12 1216323 1216323 + Nonsense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 1216323 1216323 ERC1 12 C C T 25 HTT 3064 genome.wustl.edu 36 4 3099054 3099054 + Silent SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3099054 3099054 HTT 4 G G A 38 MXRA5 25878 genome.wustl.edu 36 X 3258743 3258743 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3258743 3258743 MXRA5 23 T T G 59 CDC25B 994 genome.wustl.edu 36 20 3731558 3731558 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3731558 3731558 CDC25B 20 C C G 26 TRIM21 6737 genome.wustl.edu 36 11 4363210 4363210 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4363210 4363210 TRIM21 11 C C T 25 ADAMTS16 170690 genome.wustl.edu 36 5 5239163 5239163 + Splice_Site_SNP SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 5239163 5239163 ADAMTS16 5 A A G 15 TP53 7157 genome.wustl.edu 36 17 7514728 7514728 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7514728 7514728 TP53 17 G G A 39 C1orf127 148345 genome.wustl.edu 36 1 10940267 10940267 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10940267 10940267 C1orf127 1 C C G 24 GSPT1 2935 genome.wustl.edu 36 16 11897968 11897968 + Silent SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 11897968 11897968 GSPT1 16 C C A 27 SLC1A6 6511 genome.wustl.edu 36 19 14928395 14928395 + Silent SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 14928395 14928395 SLC1A6 19 G G A 39 OR4N5 390437 genome.wustl.edu 36 14 19682585 19682585 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19682585 19682585 OR4N5 14 C C A 24 ACSM5 54988 genome.wustl.edu 36 16 20356144 20356144 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20356144 20356144 ACSM5 16 T T C 58 ACSM5 54988 genome.wustl.edu 36 16 20356181 20356181 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20356181 20356181 ACSM5 16 C C G 29 DNAH3 55567 genome.wustl.edu 36 16 20882273 20882273 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20882273 20882273 DNAH3 16 A A C 2 HSPG2 3339 genome.wustl.edu 36 1 22074827 22074827 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22074827 22074827 HSPG2 1 G G T 46 PTCHD1 139411 genome.wustl.edu 36 X 23321291 23321291 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23321291 23321291 PTCHD1 23 A A G 6 SOX5 6660 genome.wustl.edu 36 12 23785168 23785168 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23785168 23785168 SOX5 12 T T A 54 SLC34A2 10568 genome.wustl.edu 36 4 25280501 25280501 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25280501 25280501 SLC34A2 4 G G C 41 C12orf11 55726 genome.wustl.edu 36 12 26980898 26980898 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26980898 26980898 C12orf11 12 T T C 62 LNX2 222484 genome.wustl.edu 36 13 27039953 27039953 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27039953 27039953 LNX2 13 G G A 44 FLT1 2321 genome.wustl.edu 36 13 27906235 27906235 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27906235 27906235 FLT1 13 A A T 8 GPX6 257202 genome.wustl.edu 36 6 28582114 28582114 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 28582114 28582114 GPX6 6 C C A 21 PLAGL2 5326 genome.wustl.edu 36 20 30253404 30253404 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30253404 30253404 PLAGL2 20 G G A 34 BPIL3 128859 genome.wustl.edu 36 20 31086228 31086228 + Splice_Site_SNP SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 31086228 31086228 BPIL3 20 A A G 7 C20orf152 140894 genome.wustl.edu 36 20 34031855 34031855 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34031855 34031855 C20orf152 20 G G T 41 MEIS2 4212 genome.wustl.edu 36 15 35177473 35177473 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35177473 35177473 MEIS2 15 C C T 30 FAM98B 283742 genome.wustl.edu 36 15 36544776 36544776 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36544776 36544776 FAM98B 15 G G C 33 FRMPD1 22844 genome.wustl.edu 36 9 37734774 37734774 + Silent SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37734774 37734774 FRMPD1 9 C C T 18 CNTNAP1 8506 genome.wustl.edu 36 17 38096296 38096296 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 38096296 38096296 CNTNAP1 17 G G A 41 ATL2 64225 genome.wustl.edu 36 2 38423966 38423966 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38423966 38423966 ATL2 2 C C G 19 ADAM32 203102 genome.wustl.edu 36 8 39187937 39187937 + Silent SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39187937 39187937 ADAM32 8 G G A 37 XIRP1 165904 genome.wustl.edu 36 3 39204307 39204307 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39204307 39204307 XIRP1 3 C C G 22 DSCAM 1826 genome.wustl.edu 36 21 40647355 40647355 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40647355 40647355 DSCAM 21 C C T 29 TCF20 6942 genome.wustl.edu 36 22 40935764 40935764 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40935764 40935764 TCF20 22 G G C 36 EPSTI1 94240 genome.wustl.edu 36 13 42360622 42360622 + Silent SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42360622 42360622 EPSTI1 13 A A G 4 TDRD6 221400 genome.wustl.edu 36 6 46766750 46766750 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46766750 46766750 TDRD6 6 T T C 56 ACP2 53 genome.wustl.edu 36 11 47223461 47223461 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47223461 47223461 ACP2 11 A A G 7 MADD 8567 genome.wustl.edu 36 11 47289962 47289962 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47289962 47289962 MADD 11 C C T 27 KRT6B 3854 genome.wustl.edu 36 12 51131903 51131903 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51131903 51131903 KRT6B 12 C C G 28 CCDC8 83987 genome.wustl.edu 36 19 51607209 51607209 + Silent SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 51607209 51607209 CCDC8 19 G G A 38 ANKRD52 0 genome.wustl.edu 36 12 54927661 54927661 + Silent SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 54927661 54927661 ANKRD52 12 C C T 30 OR5M3 219482 genome.wustl.edu 36 11 55994078 55994078 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55994078 55994078 OR5M3 11 T T C 60 OR9Q2 219957 genome.wustl.edu 36 11 57714852 57714852 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57714852 57714852 OR9Q2 11 C C A 18 DDX42 11325 genome.wustl.edu 36 17 59249245 59249245 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59249245 59249245 DDX42 17 C C T 31 NLRP9 338321 genome.wustl.edu 36 19 60933032 60933032 + Silent SNP A A T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60933032 60933032 NLRP9 19 A A T 7 CLVS1 157807 genome.wustl.edu 36 8 62375103 62375103 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62375103 62375103 CLVS1 8 C C G 25 MTHFD1 4522 genome.wustl.edu 36 14 63956295 63956295 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63956295 63956295 MTHFD1 14 G G C 44 SLC39A11 201266 genome.wustl.edu 36 17 68539330 68539330 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68539330 68539330 SLC39A11 17 G G A 38 TET1 80312 genome.wustl.edu 36 10 70076113 70076113 + Silent SNP T T G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 70076113 70076113 TET1 10 T T G 53 SENP8 123228 genome.wustl.edu 36 15 70219543 70219543 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 70219543 70219543 SENP8 15 T T A 58 LMBRD1 55788 genome.wustl.edu 36 6 70464211 70464211 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70464211 70464211 LMBRD1 6 G G A 33 RGAG4 340526 genome.wustl.edu 36 X 71267391 71267391 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71267391 71267391 RGAG4 23 C C T 27 HTA 283902 genome.wustl.edu 36 16 71684605 71684605 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71684605 71684605 HTA 16 T T C 51 CCDC33 80125 genome.wustl.edu 36 15 72347841 72347841 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72347841 72347841 CCDC33 15 A A T 8 ALMS1 7840 genome.wustl.edu 36 2 73570466 73570466 + Silent SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73570466 73570466 ALMS1 2 C C A 21 LOC100128989 genome.wustl.edu 36 X 74675133 74675133 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74675133 74675133 LOC100128989 23 G G T 36 ZFHX4 79776 genome.wustl.edu 36 8 77929597 77929597 + Missense_Mutation SNP A A C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77929597 77929597 ZFHX4 8 A A C 5 ANTXR2 118429 genome.wustl.edu 36 4 81171861 81171861 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81171861 81171861 ANTXR2 4 G G A 47 GRID1 2894 genome.wustl.edu 36 10 87477688 87477688 + Silent SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 87477688 87477688 GRID1 10 G G A 34 TRRAP 8295 genome.wustl.edu 36 7 98419049 98419049 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98419049 98419049 TRRAP 7 C C T 29 RRP12 23223 genome.wustl.edu 36 10 99131475 99131475 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99131475 99131475 RRP12 10 G G A 40 BIRC3 330 genome.wustl.edu 36 11 101701193 101701193 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101701193 101701193 BIRC3 11 C C G 32 BANK1 55024 genome.wustl.edu 36 4 102970198 102970198 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102970198 102970198 BANK1 4 C C T 20 RPH3A 22895 genome.wustl.edu 36 12 111805509 111805509 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111805509 111805509 RPH3A 12 G G A 39 SVEP1 79987 genome.wustl.edu 36 9 112189409 112189409 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112189409 112189409 SVEP1 9 C C T 28 CSMD3 114788 genome.wustl.edu 36 8 113763936 113763936 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113763936 113763936 CSMD3 8 C C T 30 CTTNBP2 83992 genome.wustl.edu 36 7 117138969 117138969 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 117138969 117138969 CTTNBP2 7 C C G 32 SRRM4 84530 genome.wustl.edu 36 12 118076550 118076550 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118076550 118076550 SRRM4 12 T T G 55 C5 727 genome.wustl.edu 36 9 122819952 122819952 + Splice_Site_SNP SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 122819952 122819952 C5 9 C C G 32 ODZ1 10178 genome.wustl.edu 36 X 123345571 123345571 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123345571 123345571 ODZ1 23 C C A 32 ZNF608 57507 genome.wustl.edu 36 5 124012207 124012207 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124012207 124012207 ZNF608 5 T T A 58 FAM24A 118670 genome.wustl.edu 36 10 124662386 124662386 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124662386 124662386 FAM24A 10 T T C 55 TNPO3 23534 genome.wustl.edu 36 7 128442343 128442343 + Silent SNP G G T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128442343 128442343 TNPO3 7 G G T 40 MST4 51765 genome.wustl.edu 36 X 131034720 131034720 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 131034720 131034720 MST4 23 G G A 37 EFR3A 23167 genome.wustl.edu 36 8 133026219 133026219 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133026219 133026219 EFR3A 8 G G C 36 HIPK2 28996 genome.wustl.edu 36 7 138949750 138949750 + Silent SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 138949750 138949750 HIPK2 7 G G C 35 PCDHB16 57717 genome.wustl.edu 36 5 140542825 140542825 + Silent SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 140542825 140542825 PCDHB16 5 C C T 20 ACVR1 90 genome.wustl.edu 36 2 158302334 158302334 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158302334 158302334 ACVR1 2 C C G 29 HMP19 51617 genome.wustl.edu 36 5 173466990 173466990 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 173466990 173466990 HMP19 5 G G A 38 HOXD10 3236 genome.wustl.edu 36 2 176691930 176691930 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 176691930 176691930 HOXD10 2 G G A 41 LAMC2 3918 genome.wustl.edu 36 1 181479120 181479120 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 181479120 181479120 LAMC2 1 C C G 22 STAT1 6772 genome.wustl.edu 36 2 191547839 191547839 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 191547839 191547839 STAT1 2 C C G 18 UBXN7 26043 genome.wustl.edu 36 3 197579394 197579394 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 197579394 197579394 UBXN7 3 C C A 32 BMPR2 659 genome.wustl.edu 36 2 203132718 203132718 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 203132718 203132718 BMPR2 2 G G C 40 EPRS 2058 genome.wustl.edu 36 1 218228735 218228735 + Silent SNP T T C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 218228735 218228735 EPRS 1 T T C 56 AGFG1 3267 genome.wustl.edu 36 2 228126694 228126694 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 228126694 228126694 AGFG1 2 A A G 3 COL6A3 1293 genome.wustl.edu 36 2 237908009 237908009 + Silent SNP T T G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 237908009 237908009 COL6A3 2 T T G 63 RGS7 6000 genome.wustl.edu 36 1 239032743 239032743 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 239032743 239032743 RGS7 1 C C T 18 COL4A1 1282 genome.wustl.edu 36 13 109615261 109615261 + Missense_Mutation SNP G A G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 109615261 109615261 COL4A1 13 G A G 43 POLI 11201 genome.wustl.edu 36 18 50054322 50054322 + Silent SNP C A C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C A C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Silent SNP 50054322 50054322 POLI 18 C A C 24 NRP1 8829 genome.wustl.edu 36 10 33550667 33550667 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33550667 33550667 NRP1 10 C C G 18 POTEKP genome.wustl.edu 36 2 132074138 132074138 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132074138 132074138 POTEKP 2 C C G 20 ENSG00000197004 genome.wustl.edu 36 4 9365900 9365900 + Silent SNP T T A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 9365900 9365900 ENSG00000197004 4 T T A 54 PCDHA2 56146 genome.wustl.edu 36 5 140154755 140154755 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140154755 140154755 PCDHA2 5 G G C 43 CDSN 1041 genome.wustl.edu 36 6 31191799 31191799 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31191799 31191799 CDSN 6 C C G 20 ROR2 4920 genome.wustl.edu 36 9 93527050 93527050 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0884-01 TCGA-13-0884-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93527050 93527050 ROR2 9 G G A 43 C8orf76 84933 genome.wustl.edu 36 8 124312749 124312759 + Frame_Shift_Del DEL TCAGCTGAGTC TCAGCTGAGTC - Unknown TCGA-13-0884-01 TCGA-13-0884-10 TCAGCTGAGTC TCAGCTGAGTC TCAGCTGAGTC - TCAGCTGAGTC TCAGCTGAGTC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 124312749 124312759 C8orf76 8 TCAGCTGAGTC TCAGCTGAGTC - 62