Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACOT11	26027	hgsc.bcm.edu	36	1	54832259	54832259	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	54832259	54832259	ACOT11	1	A	A	T	5
ACTR3B	57180	hgsc.bcm.edu	36	7	152180203	152180203	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152180203	152180203	ACTR3B	7	G	G	T	43
ADAMTS16	170690	hgsc.bcm.edu	36	5	5372202	5372202	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5372202	5372202	ADAMTS16	5	A	A	T	3
AIM1	202	hgsc.bcm.edu	36	6	107074445	107074445	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	107074445	107074445	AIM1	6	T	T	C	60
AP3B2	8120	hgsc.bcm.edu	36	15	81130227	81130227	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	81130227	81130227	AP3B2	15	C	C	A	20
ATP11C	286410	hgsc.bcm.edu	36	X	138671799	138671799	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	138671799	138671799	ATP11C	23	T	T	A	57
ATP1B4	23439	hgsc.bcm.edu	36	X	119380053	119380053	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	119380053	119380053	ATP1B4	23	T	T	G	51
BAMBI	25805	hgsc.bcm.edu	36	10	29011120	29011120	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29011120	29011120	BAMBI	10	G	G	C	33
BPTF	2186	hgsc.bcm.edu	36	17	63338405	63338405	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	63338405	63338405	BPTF	17	A	A	-	8
BTBD3	22903	hgsc.bcm.edu	36	20	11851653	11851653	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11851653	11851653	BTBD3	20	C	C	A	27
C11orf30	56946	hgsc.bcm.edu	36	11	75852606	75852606	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75852606	75852606	C11orf30	11	A	A	T	3
C17orf75	64149	hgsc.bcm.edu	36	17	27683051	27683051	+	Nonsense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	27683051	27683051	C17orf75	17	A	A	C	8
OSCP1	127700	hgsc.bcm.edu	36	1	36660980	36660980	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36660980	36660980	OSCP1	1	C	C	T	31
CDH17	1015	hgsc.bcm.edu	36	8	95276051	95276051	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	95276051	95276051	CDH17	8	A	A	T	13
CENPP	401541	hgsc.bcm.edu	36	9	94181964	94181964	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	94181964	94181964	CENPP	9	T	T	A	57
CHMP4A	29082	hgsc.bcm.edu	36	14	23748961	23748961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23748961	23748961	CHMP4A	14	C	C	T	29
CIITA	4261	hgsc.bcm.edu	36	16	10908922	10908922	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10908922	10908922	CIITA	16	C	C	A	26
CNTN2	6900	hgsc.bcm.edu	36	1	203305707	203305707	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	203305707	203305707	CNTN2	1	G	G	C	37
CTNND2	1501	hgsc.bcm.edu	36	5	11212781	11212781	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11212781	11212781	CTNND2	5	G	G	T	43
DCC	1630	hgsc.bcm.edu	36	18	48988184	48988184	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Silent	SNP	48988184	48988184	DCC	18	C	C	T	19
DCHS1	8642	hgsc.bcm.edu	36	11	6609200	6609200	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6609200	6609200	DCHS1	11	C	C	G	25
DCHS1	8642	hgsc.bcm.edu	36	11	6618172	6618172	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	6618172	6618172	DCHS1	11	G	G	-	47
DLG1	1739	hgsc.bcm.edu	36	3	198347889	198347889	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	198347889	198347889	DLG1	3	C	C	T	28
DPYSL3	1809	hgsc.bcm.edu	36	5	146757506	146757506	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	146757506	146757506	DPYSL3	5	C	C	T	25
DRG2	1819	hgsc.bcm.edu	36	17	17944626	17944626	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17944626	17944626	DRG2	17	A	A	G	8
EYA1	2138	hgsc.bcm.edu	36	8	72291551	72291551	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72291551	72291551	EYA1	8	C	C	A	30
FSIP1	161835	hgsc.bcm.edu	36	15	37697564	37697564	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	37697564	37697564	FSIP1	15	C	C	A	29
G6PD	2539	hgsc.bcm.edu	36	X	153413423	153413423	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153413423	153413423	G6PD	23	G	G	A	43
G6PD	2539	hgsc.bcm.edu	36	X	153413454	153413454	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153413454	153413454	G6PD	23	G	G	C	41
GAB2	9846	hgsc.bcm.edu	36	11	77608095	77608095	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	77608095	77608095	GAB2	11	G	G	C	39
GOLGA1	2800	hgsc.bcm.edu	36	9	126684035	126684035	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	126684035	126684035	GOLGA1	9	T	T	C	54
GP2	2813	hgsc.bcm.edu	36	16	20243023	20243023	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20243023	20243023	GP2	16	G	G	C	41
GPRASP1	9737	hgsc.bcm.edu	36	X	101798078	101798079	+	Frame_Shift_Del	DEL	GG	GG	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	101798078	101798079	GPRASP1	23	GG	GG	-	39
HMCN2	256158	hgsc.bcm.edu	36	9	132216694	132216694	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	132216694	132216694	HMCN2	9	C	C	T	23
KIAA2022	340533	hgsc.bcm.edu	36	X	73876034	73876034	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	73876034	73876034	KIAA2022	23	T	T	-	56
LAIR1	3903	hgsc.bcm.edu	36	19	59559971	59559971	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59559971	59559971	LAIR1	19	A	A	T	11
LIPK	643414	hgsc.bcm.edu	36	10	90481996	90481996	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	90481996	90481996	LIPK	10	C	C	T	19
LRRC15	131578	hgsc.bcm.edu	36	3	195562155	195562155	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	195562155	195562155	LRRC15	3	T	T	C	51
MAGI1	9223	hgsc.bcm.edu	36	3	65317620	65317620	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65317620	65317620	MAGI1	3	T	T	C	62
MCM2	4171	hgsc.bcm.edu	36	3	128806515	128806515	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128806515	128806515	MCM2	3	A	A	G	12
MED24	9862	hgsc.bcm.edu	36	17	35463376	35463376	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35463376	35463376	MED24	17	A	A	T	8
MKL1	57591	hgsc.bcm.edu	36	22	39146900	39146900	+	Indel	Indel	C	C	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Indel	Indel	39146900	39146900	MKL1	22	C	C	G	27
MYH11	4629	hgsc.bcm.edu	36	16	15761906	15761906	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	15761906	15761906	MYH11	16	T	T	C	64
NDUFS4	4724	hgsc.bcm.edu	36	5	52892305	52892305	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52892305	52892305	NDUFS4	5	C	C	G	25
NPC1	4864	hgsc.bcm.edu	36	18	19381973	19381973	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	19381973	19381973	NPC1	18	T	T	C	64
NPHS1	4868	hgsc.bcm.edu	36	19	41025228	41025228	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41025228	41025228	NPHS1	19	C	C	T	27
P2RY10	27334	hgsc.bcm.edu	36	X	78102726	78102726	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	78102726	78102726	P2RY10	23	C	C	G	18
PCDHB5	26167	hgsc.bcm.edu	36	5	140497565	140497565	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140497565	140497565	PCDHB5	5	C	C	T	23
PCDHGC4	56098	hgsc.bcm.edu	36	5	140846674	140846674	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140846674	140846674	PCDHGC4	5	G	G	C	36
PCGF1	84759	hgsc.bcm.edu	36	2	74585824	74585824	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74585824	74585824	PCGF1	2	G	G	A	47
PFKP	5214	hgsc.bcm.edu	36	10	3168690	3168690	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3168690	3168690	PFKP	10	G	G	A	45
PHC1	1911	hgsc.bcm.edu	36	12	8964923	8964923	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8964923	8964923	PHC1	12	G	G	A	42
PHF21A	51317	hgsc.bcm.edu	36	11	45924007	45924007	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45924007	45924007	PHF21A	11	G	G	T	35
PIGZ	80235	hgsc.bcm.edu	36	3	198159623	198159623	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	198159623	198159623	PIGZ	3	T	T	A	54
PIK3CG	5294	hgsc.bcm.edu	36	7	106296575	106296575	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	106296575	106296575	PIK3CG	7	G	G	T	42
PRKCZ	5590	hgsc.bcm.edu	36	1	2072153	2072153	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2072153	2072153	PRKCZ	1	A	A	C	10
PRKDC	5591	hgsc.bcm.edu	36	8	48934837	48934837	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48934837	48934837	PRKDC	8	G	G	A	46
PYGM	5837	hgsc.bcm.edu	36	11	64279349	64279349	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	64279349	64279349	PYGM	11	A	A	G	12
SIKE1	80143	hgsc.bcm.edu	36	1	115124580	115124580	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	115124580	115124580	SIKE1	1	C	C	A	18
RXFP4	339403	hgsc.bcm.edu	36	1	154178638	154178645	+	Frame_Shift_Del	DEL	GTGACGGT	GTGACGGT	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	GTGACGGT	GTGACGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	154178638	154178645	RXFP4	1	GTGACGGT	GTGACGGT	-	44
SCN2B	6327	hgsc.bcm.edu	36	11	117544668	117544668	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117544668	117544668	SCN2B	11	C	C	T	24
SCUBE2	57758	hgsc.bcm.edu	36	11	9011822	9011822	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	9011822	9011822	SCUBE2	11	A	A	C	6
SERPINA4	5267	hgsc.bcm.edu	36	14	94100013	94100013	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94100013	94100013	SERPINA4	14	C	C	A	17
SERPINA4	5267	hgsc.bcm.edu	36	14	94100151	94100151	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94100151	94100151	SERPINA4	14	G	G	C	33
SRSF2IP	9169	hgsc.bcm.edu	36	12	44628582	44628582	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44628582	44628582	SRSF2IP	12	T	T	A	56
SH2B1	25970	hgsc.bcm.edu	36	16	28791510	28791510	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28791510	28791510	SH2B1	16	C	C	T	30
SLC22A10	387775	hgsc.bcm.edu	36	11	62821382	62821382	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	62821382	62821382	SLC22A10	11	T	T	C	64
SUPT5H	6829	hgsc.bcm.edu	36	19	44647355	44647355	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44647355	44647355	SUPT5H	19	C	C	A	19
TARBP1	6894	hgsc.bcm.edu	36	1	232620539	232620539	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	232620539	232620539	TARBP1	1	T	T	C	51
TET3	200424	hgsc.bcm.edu	36	2	74180209	74180211	+	In_Frame_Del	DEL	AGG	AGG	-	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	AGG	AGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	74180209	74180211	TET3	2	AGG	AGG	-	7
THAP10	56906	hgsc.bcm.edu	36	15	68961967	68961967	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68961967	68961967	THAP10	15	T	T	C	62
TMEM126B	55863	hgsc.bcm.edu	36	11	85024876	85024876	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85024876	85024876	TMEM126B	11	T	T	C	51
TMEM136	219902	hgsc.bcm.edu	36	11	119703344	119703344	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	119703344	119703344	TMEM136	11	G	G	A	47
TMX1	81542	hgsc.bcm.edu	36	14	50776779	50776779	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50776779	50776779	TMX1	14	C	C	G	32
TP53	7157	hgsc.bcm.edu	36	17	7518291	7518292	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	7518291	7518292	TP53	17	-	-	A	61
UNC5C	8633	hgsc.bcm.edu	36	4	96359271	96359271	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96359271	96359271	UNC5C	4	G	G	A	44
VIPR2	7434	hgsc.bcm.edu	36	7	158627967	158627967	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158627967	158627967	VIPR2	7	T	T	A	51
ZDHHC24	254359	hgsc.bcm.edu	36	11	66067851	66067851	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-0792-01	TCGA-13-0792-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	66067851	66067851	ZDHHC24	11	G	G	T	33