Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACTR1B	10120	hgsc.bcm.edu	36	2	97642245	97642245	+	Splice_Site_SNP	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	97642245	97642245	ACTR1B	2	A	A	G	6
ADCY5	111	hgsc.bcm.edu	36	3	124488299	124488299	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124488299	124488299	ADCY5	3	G	G	T	42
ATG9B	285973	hgsc.bcm.edu	36	7	150352150	150352151	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	150352150	150352151	ATG9B	7	-	-	G	63
RPF2	84154	hgsc.bcm.edu	36	6	111427607	111427607	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111427607	111427607	RPF2	6	G	G	T	44
C10orf71	118461	hgsc.bcm.edu	36	10	50202322	50202322	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50202322	50202322	C10orf71	10	C	C	A	22
C1orf27	54953	hgsc.bcm.edu	36	1	184621787	184621787	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	184621787	184621787	C1orf27	1	T	T	C	61
CDA	978	hgsc.bcm.edu	36	1	20804076	20804076	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	20804076	20804076	CDA	1	G	A	A	40
CLCA2	9635	hgsc.bcm.edu	36	1	86662672	86662672	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86662672	86662672	CLCA2	1	C	C	A	18
CNTNAP5	129684	hgsc.bcm.edu	36	2	124891577	124891577	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	124891577	124891577	CNTNAP5	2	C	C	T	24
DCHS1	8642	hgsc.bcm.edu	36	11	6609200	6609200	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6609200	6609200	DCHS1	11	C	C	G	25
DHX15	1665	hgsc.bcm.edu	36	4	24152731	24152731	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	24152731	24152731	DHX15	4	G	G	A	37
DNAH5	1767	hgsc.bcm.edu	36	5	13767612	13767612	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13767612	13767612	DNAH5	5	C	C	T	30
DNAJC14	85406	hgsc.bcm.edu	36	12	54502086	54502086	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54502086	54502086	DNAJC14	12	G	G	A	43
DPPA2	151871	hgsc.bcm.edu	36	3	110516051	110516051	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110516051	110516051	DPPA2	3	T	T	C	56
DST	667	hgsc.bcm.edu	36	6	56591591	56591591	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56591591	56591591	DST	6	G	G	T	47
EEF2K	29904	hgsc.bcm.edu	36	16	22185533	22185533	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	22185533	22185533	EEF2K	16	C	C	G	18
EPHB3	2049	hgsc.bcm.edu	36	3	185773410	185773410	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	185773410	185773410	EPHB3	3	T	T	-	50
FAM13C	220965	hgsc.bcm.edu	36	10	60684181	60684181	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60684181	60684181	FAM13C	10	T	T	C	56
GABRA4	2557	hgsc.bcm.edu	36	4	46667929	46667929	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	46667929	46667929	GABRA4	4	T	T	A	51
GDA	9615	hgsc.bcm.edu	36	9	74030472	74030472	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	74030472	74030472	GDA	9	T	T	C	49
GLI2	2736	hgsc.bcm.edu	36	2	121449093	121449094	+	Frame_Shift_Del	DEL	GA	GA	-	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	121449093	121449094	GLI2	2	GA	GA	-	45
GLI2	2736	hgsc.bcm.edu	36	2	121449096	121449096	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121449096	121449096	GLI2	2	A	A	C	10
GLT6D1	360203	hgsc.bcm.edu	36	9	137655932	137655932	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	137655932	137655932	GLT6D1	9	T	T	C	58
GPR123	84435	hgsc.bcm.edu	36	10	134762163	134762163	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	134762163	134762163	GPR123	10	A	A	T	6
GPR98	84059	hgsc.bcm.edu	36	5	89985251	89985251	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	89985251	89985251	GPR98	5	T	T	C	51
GRIN2B	2904	hgsc.bcm.edu	36	12	13614102	13614102	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	A	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	13614102	13614102	GRIN2B	12	C	A	A	26
GYS1	2997	hgsc.bcm.edu	36	19	54177337	54177337	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54177337	54177337	GYS1	19	T	G	G	60
HEATR7B2	133558	hgsc.bcm.edu	36	5	41097435	41097435	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41097435	41097435	HEATR7B2	5	G	G	T	47
HMCN1	83872	hgsc.bcm.edu	36	1	184310531	184310531	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	184310531	184310531	HMCN1	1	G	G	A	37
INTU	27152	hgsc.bcm.edu	36	4	128784161	128784161	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128784161	128784161	INTU	4	A	A	G	1
ITPA	3704	hgsc.bcm.edu	36	20	3142676	3142676	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3142676	3142676	ITPA	20	G	G	T	46
ITPR3	3710	hgsc.bcm.edu	36	6	33770806	33770806	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33770806	33770806	ITPR3	6	A	A	G	6
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1607696	1607696	KRTAP5-5	11	G	G	T	40
LINGO1	84894	hgsc.bcm.edu	36	15	75694900	75694900	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75694900	75694900	LINGO1	15	G	G	A	39
MAPRE2	10982	hgsc.bcm.edu	36	18	30904249	30904249	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30904249	30904249	MAPRE2	18	C	C	A	32
NUP98	4928	hgsc.bcm.edu	36	11	3709314	3709314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	3709314	3709314	NUP98	11	C	C	T	27
OPN1LW	5956	hgsc.bcm.edu	36	X	153071654	153071654	+	Missense_Mutation	SNP	C	C	A	rs713	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153071654	153071654	OPN1LW	23	C	C	A	28
PAQR8	85315	hgsc.bcm.edu	36	6	52377005	52377005	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52377005	52377005	PAQR8	6	C	C	T	29
PGLYRP2	114770	hgsc.bcm.edu	36	19	15443817	15443817	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15443817	15443817	PGLYRP2	19	C	C	A	25
PLXDC1	57125	hgsc.bcm.edu	36	17	34488905	34488905	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34488905	34488905	PLXDC1	17	A	A	T	8
POGK	57645	hgsc.bcm.edu	36	1	165084951	165084951	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	165084951	165084951	POGK	1	T	T	A	53
POLN	353497	hgsc.bcm.edu	36	4	2179581	2179581	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	2179581	2179581	POLN	4	G	G	A	45
PRKAR2A	5576	hgsc.bcm.edu	36	3	48764620	48764620	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48764620	48764620	PRKAR2A	3	T	T	G	52
PTPRN	5798	hgsc.bcm.edu	36	2	219870250	219870250	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	219870250	219870250	PTPRN	2	G	G	A	38
PTPRZ1	5803	hgsc.bcm.edu	36	7	121395259	121395259	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121395259	121395259	PTPRZ1	7	A	A	T	4
RGS16	6004	hgsc.bcm.edu	36	1	180837829	180837829	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	180837829	180837829	RGS16	1	G	G	A	33
RIPK3	11035	hgsc.bcm.edu	36	14	23876508	23876508	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	23876508	23876508	RIPK3	14	T	T	A	55
RNF157	114804	hgsc.bcm.edu	36	17	71663972	71663972	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	71663972	71663972	RNF157	17	T	T	-	54
RTN2	6253	hgsc.bcm.edu	36	19	50683961	50683961	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	50683961	50683961	RTN2	19	G	G	A	37
RTTN	25914	hgsc.bcm.edu	36	18	65946681	65946681	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65946681	65946681	RTTN	18	C	C	A	21
SEPT4	5414	hgsc.bcm.edu	36	17	53953149	53953149	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53953149	53953149	SEPT4	17	C	C	A	22
SLAIN1	122060	hgsc.bcm.edu	36	13	77233213	77233213	+	Missense_Mutation	SNP	T	G	G	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77233213	77233213	SLAIN1	13	T	G	G	55
SMOC2	64094	hgsc.bcm.edu	36	6	168750789	168750789	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	168750789	168750789	SMOC2	6	G	G	A	39
SND1	27044	hgsc.bcm.edu	36	7	127315251	127315251	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	127315251	127315251	SND1	7	T	T	A	51
SRL	6345	hgsc.bcm.edu	36	16	4182769	4182769	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4182769	4182769	SRL	16	C	C	T	23
STAC3	246329	hgsc.bcm.edu	36	12	55924221	55924221	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55924221	55924221	STAC3	12	G	G	A	39
SUMF2	25870	hgsc.bcm.edu	36	7	56099526	56099527	+	In_Frame_Ins	INS	-	-	AGT	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	56099526	56099527	SUMF2	7	-	-	AGT	26
TEKT4	150483	hgsc.bcm.edu	36	2	94904395	94904395	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	94904395	94904395	TEKT4	2	C	C	T	23
TP53	7157	hgsc.bcm.edu	36	17	7517577	7517577	+	Splice_Site_SNP	SNP	C	C	A	rs11575997	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7517577	7517577	TP53	17	C	C	A	18
TRIM71	131405	hgsc.bcm.edu	36	3	32890468	32890468	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	32890468	32890468	TRIM71	3	G	G	-	37
ULK4	54986	hgsc.bcm.edu	36	3	41472020	41472020	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	41472020	41472020	ULK4	3	G	G	A	48
WHSC1	7468	hgsc.bcm.edu	36	4	1872564	1872564	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	1872564	1872564	WHSC1	4	A	A	-	6
XIAP	331	hgsc.bcm.edu	36	X	122868603	122868603	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122868603	122868603	XIAP	23	T	T	A	64
YTHDF1	54915	hgsc.bcm.edu	36	20	61304644	61304644	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	61304644	61304644	YTHDF1	20	G	G	A	47
ZFP41	286128	hgsc.bcm.edu	36	8	144403826	144403826	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	144403826	144403826	ZFP41	8	G	G	A	43
ZNF85	7639	hgsc.bcm.edu	36	19	20923504	20923504	+	Missense_Mutation	SNP	G	G	T	rs56231962	Unknown	TCGA-10-0938-01	TCGA-10-0938-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20923504	20923504	ZNF85	19	G	G	T	33