Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTS14	140766	hgsc.bcm.edu	36	10	72159929	72159929	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72159929	72159929	ADAMTS14	10	C	C	A	20
ADCY2	108	hgsc.bcm.edu	36	5	7573994	7573994	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	7573994	7573994	ADCY2	5	G	G	A	35
AIFM3	150209	hgsc.bcm.edu	36	22	19660811	19660811	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	19660811	19660811	AIFM3	22	G	G	T	47
ANXA6	309	hgsc.bcm.edu	36	5	150492274	150492274	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150492274	150492274	ANXA6	5	C	C	T	31
ARMS2	387715	hgsc.bcm.edu	36	10	124204248	124204248	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	124204248	124204248	ARMS2	10	C	C	A	18
BNIP3L	665	hgsc.bcm.edu	36	8	26321470	26321470	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26321470	26321470	BNIP3L	8	A	A	C	11
BPNT1	10380	hgsc.bcm.edu	36	1	218319790	218319790	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	218319790	218319790	BPNT1	1	A	A	C	2
BRF1	2972	hgsc.bcm.edu	36	14	104755073	104755073	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104755073	104755073	BRF1	14	A	A	G	6
C20orf96	140680	hgsc.bcm.edu	36	20	205959	205959	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	205959	205959	C20orf96	20	G	G	C	35
CREB3L4	148327	hgsc.bcm.edu	36	1	152207768	152207768	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152207768	152207768	CREB3L4	1	A	A	G	5
EXD1	161829	hgsc.bcm.edu	36	15	39263912	39263912	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39263912	39263912	EXD1	15	T	T	G	63
FAM177B	400823	hgsc.bcm.edu	36	1	220989520	220989520	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	220989520	220989520	FAM177B	1	A	A	C	5
FAM71B	153745	hgsc.bcm.edu	36	5	156522680	156522680	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	156522680	156522680	FAM71B	5	C	C	A	24
FBXO24	26261	hgsc.bcm.edu	36	7	100030098	100030098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	100030098	100030098	FBXO24	7	C	C	G	17
GLG1	2734	hgsc.bcm.edu	36	16	73057108	73057108	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	73057108	73057108	GLG1	16	G	G	C	48
HJURP	55355	hgsc.bcm.edu	36	2	234414835	234414835	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	234414835	234414835	HJURP	2	C	C	T	30
IFT88	8100	hgsc.bcm.edu	36	13	20128512	20128512	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20128512	20128512	IFT88	13	C	C	G	21
ILF3	3609	hgsc.bcm.edu	36	19	10650296	10650296	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	10650296	10650296	ILF3	19	A	A	G	16
LMCD1	29995	hgsc.bcm.edu	36	3	8584271	8584271	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8584271	8584271	LMCD1	3	C	C	G	30
MAGED2	10916	hgsc.bcm.edu	36	X	54857825	54857825	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	54857825	54857825	MAGED2	23	G	G	C	47
MLL4	9757	hgsc.bcm.edu	36	19	40903582	40903582	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40903582	40903582	MLL4	19	C	C	A	18
MMP3	4314	hgsc.bcm.edu	36	11	102215174	102215174	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102215174	102215174	MMP3	11	G	G	A	38
MYBPC1	4604	hgsc.bcm.edu	36	12	100562585	100562585	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100562585	100562585	MYBPC1	12	T	T	C	52
MYO5C	55930	hgsc.bcm.edu	36	15	50340571	50340571	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	50340571	50340571	MYO5C	15	C	C	G	30
NCAPD2	9918	hgsc.bcm.edu	36	12	6505552	6505552	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6505552	6505552	NCAPD2	12	T	T	G	51
NIT2	56954	hgsc.bcm.edu	36	3	101541403	101541403	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101541403	101541403	NIT2	3	A	A	G	4
NUP205	23165	hgsc.bcm.edu	36	7	134909107	134909107	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	134909107	134909107	NUP205	7	C	C	A	32
OTUD6B	51633	hgsc.bcm.edu	36	8	92151782	92151782	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	92151782	92151782	OTUD6B	8	G	G	T	47
PACS2	23241	hgsc.bcm.edu	36	14	104928592	104928592	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104928592	104928592	PACS2	14	G	G	A	48
PACS2	23241	hgsc.bcm.edu	36	14	104928594	104928594	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	104928594	104928594	PACS2	14	G	G	A	45
PCLO	27445	hgsc.bcm.edu	36	7	82228628	82228628	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82228628	82228628	PCLO	7	G	G	A	33
PLSCR1	5359	hgsc.bcm.edu	36	3	147729140	147729140	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	147729140	147729140	PLSCR1	3	G	G	A	38
PPIG	9360	hgsc.bcm.edu	36	2	170201655	170201655	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	170201655	170201655	PPIG	2	A	A	G	11
PRKCZ	5590	hgsc.bcm.edu	36	1	2072179	2072179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2072179	2072179	PRKCZ	1	C	C	T	27
PTPN12	5782	hgsc.bcm.edu	36	7	77085743	77085743	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77085743	77085743	PTPN12	7	A	A	T	2
RAG2	5897	hgsc.bcm.edu	36	11	36571142	36571142	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	36571142	36571142	RAG2	11	A	A	G	5
RASSF5	83593	hgsc.bcm.edu	36	1	204826798	204826798	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	204826798	204826798	RASSF5	1	C	C	A	30
RUNDC3A	10900	hgsc.bcm.edu	36	17	39747660	39747660	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39747660	39747660	RUNDC3A	17	C	C	T	27
RYK	6259	hgsc.bcm.edu	36	3	135379571	135379571	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	135379571	135379571	RYK	3	T	T	C	56
SCAP	22937	hgsc.bcm.edu	36	3	47459376	47459376	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47459376	47459376	SCAP	3	A	A	C	3
SOCS4	122809	hgsc.bcm.edu	36	14	54580048	54580048	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54580048	54580048	SOCS4	14	G	G	C	33
SPTB	6710	hgsc.bcm.edu	36	14	64322388	64322388	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	64322388	64322388	SPTB	14	G	G	C	41
SRPR	6734	hgsc.bcm.edu	36	11	125642297	125642297	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	125642297	125642297	SRPR	11	T	T	-	56
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	G	A	39
TXNDC2	84203	hgsc.bcm.edu	36	18	9877064	9877064	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9877064	9877064	TXNDC2	18	G	G	A	36
UGDH	7358	hgsc.bcm.edu	36	4	39188367	39188367	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	39188367	39188367	UGDH	4	C	C	A	18
ZDHHC8	29801	hgsc.bcm.edu	36	22	18506823	18506823	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18506823	18506823	ZDHHC8	22	G	G	T	47
ZER1	10444	hgsc.bcm.edu	36	9	130555993	130555993	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0937-01	TCGA-10-0937-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	130555993	130555993	ZER1	9	C	C	T	23