Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context OR4F5 79501 genome.wustl.edu 36 1 59401 59401 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59401 59401 OR4F5 1 G A A 44 TP53 7157 genome.wustl.edu 36 17 7519015 7519015 + Splice_Site_SNP SNP C G G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7519015 7519015 TP53 17 C G G 24 MYH10 4628 genome.wustl.edu 36 17 8337021 8337021 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8337021 8337021 MYH10 17 T T C 62 OR7G3 390883 genome.wustl.edu 36 19 9098569 9098569 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9098569 9098569 OR7G3 19 C C A 30 BTBD3 22903 genome.wustl.edu 36 20 11852279 11852279 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11852279 11852279 BTBD3 20 G G A 43 GRIN2B 2904 genome.wustl.edu 36 12 13659413 13659413 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13659413 13659413 GRIN2B 12 C C T 31 ANKRD30B 374860 genome.wustl.edu 36 18 14772535 14772535 + Nonsense_Mutation SNP G G T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 14772535 14772535 ANKRD30B 18 G G T 45 NBPF3 84224 genome.wustl.edu 36 1 21670841 21670841 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21670841 21670841 NBPF3 1 C C G 18 NYNRIN 57523 genome.wustl.edu 36 14 23947546 23947546 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23947546 23947546 NYNRIN 14 C C T 23 DSC1 1823 genome.wustl.edu 36 18 26968696 26968696 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26968696 26968696 DSC1 18 G G T 40 OR5V1 81696 genome.wustl.edu 36 6 29431442 29431442 + Silent SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 29431442 29431442 OR5V1 6 G G A 46 SON 6651 genome.wustl.edu 36 21 33848290 33848290 + Missense_Mutation SNP T T A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33848290 33848290 SON 21 T T A 60 ANKRD30A 91074 genome.wustl.edu 36 10 37526222 37526222 + Silent SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37526222 37526222 ANKRD30A 10 C C T 23 CYP1B1 1545 genome.wustl.edu 36 2 38151642 38151642 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38151642 38151642 CYP1B1 2 G G C 48 LCP1 3936 genome.wustl.edu 36 13 45614517 45614517 + Silent SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 45614517 45614517 LCP1 13 C C T 31 GABRA2 2555 genome.wustl.edu 36 4 45947281 45947281 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45947281 45947281 GABRA2 4 G G C 44 KRT1 3848 genome.wustl.edu 36 12 51358657 51358657 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51358657 51358657 KRT1 12 C C T 29 PRTG 283659 genome.wustl.edu 36 15 53820119 53820119 + Silent SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 53820119 53820119 PRTG 15 G G A 45 PHACTR3 116154 genome.wustl.edu 36 20 57751719 57751719 + Splice_Site_SNP SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 57751719 57751719 PHACTR3 20 G G A 44 HTR1A 3350 genome.wustl.edu 36 5 63292623 63292623 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63292623 63292623 HTR1A 5 C C T 27 SLC7A6OS 84138 genome.wustl.edu 36 16 66895521 66895521 + Missense_Mutation SNP T C C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66895521 66895521 SLC7A6OS 16 T C C 49 C8orf45 157777 genome.wustl.edu 36 8 67952151 67952151 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67952151 67952151 C8orf45 8 T T G 55 UGT2B10 7365 genome.wustl.edu 36 4 69727856 69727856 + Splice_Site_SNP SNP G G C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 69727856 69727856 UGT2B10 4 G G C 40 POLD3 10714 genome.wustl.edu 36 11 74024916 74024916 + Missense_Mutation SNP A A C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74024916 74024916 POLD3 11 A A C 2 WHAMM 123720 genome.wustl.edu 36 15 81296867 81296867 + Nonsense_Mutation SNP G G T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 81296867 81296867 WHAMM 15 G G T 41 WHAMM 123720 genome.wustl.edu 36 15 81299246 81299246 + Silent SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 81299246 81299246 WHAMM 15 G G A 33 RNLS 55328 genome.wustl.edu 36 10 90112411 90112411 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90112411 90112411 RNLS 10 C C G 31 ENTPD1 953 genome.wustl.edu 36 10 97589521 97589521 + Silent SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 97589521 97589521 ENTPD1 10 C C T 27 OR5H2 79310 genome.wustl.edu 36 3 99484630 99484630 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99484630 99484630 OR5H2 3 G G T 36 MYO16 23026 genome.wustl.edu 36 13 108575501 108575501 + Silent SNP A A G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 108575501 108575501 MYO16 13 A A G 9 CSDE1 7812 genome.wustl.edu 36 1 115083932 115083932 + Missense_Mutation SNP T T G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115083932 115083932 CSDE1 1 T T G 60 ROS1 6098 genome.wustl.edu 36 6 117738055 117738055 + Missense_Mutation SNP C T T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 117738055 117738055 ROS1 6 C T T 27 PNLIP 5406 genome.wustl.edu 36 10 118308707 118308707 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118308707 118308707 PNLIP 10 G G A 46 DAB2IP 153090 genome.wustl.edu 36 9 123561076 123561076 + Nonsense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 123561076 123561076 DAB2IP 9 C C T 27 SPRY1 10252 genome.wustl.edu 36 4 124542801 124542801 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124542801 124542801 SPRY1 4 T T C 63 AKR1B1 231 genome.wustl.edu 36 7 133782646 133782646 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133782646 133782646 AKR1B1 7 T T C 62 PCDHA9 9752 genome.wustl.edu 36 5 140208366 140208366 + Silent SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 140208366 140208366 PCDHA9 5 C C T 23 PCDHGA12 26025 genome.wustl.edu 36 5 140790893 140790893 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140790893 140790893 PCDHGA12 5 A A G 10 PRPF3 9129 genome.wustl.edu 36 1 148574237 148574237 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148574237 148574237 PRPF3 1 C C A 18 MLL3 58508 genome.wustl.edu 36 7 151482139 151482139 + Silent SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151482139 151482139 MLL3 7 G G A 45 FCRL5 83416 genome.wustl.edu 36 1 155764297 155764297 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155764297 155764297 FCRL5 1 C C T 27 SPTA1 6708 genome.wustl.edu 36 1 156873163 156873163 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 156873163 156873163 SPTA1 1 T T C 57 CLCN3 1182 genome.wustl.edu 36 4 170871004 170871004 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 170871004 170871004 CLCN3 4 C C G 26 TTN 7273 genome.wustl.edu 36 2 179105686 179105686 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179105686 179105686 TTN 2 T T C 55 COL3A1 1281 genome.wustl.edu 36 2 189581976 189581976 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 189581976 189581976 COL3A1 2 G G A 38 ITPR2 3709 genome.wustl.edu 36 12 26876940 26876940 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26876940 26876940 ITPR2 12 G G C 37 RTN2 6253 genome.wustl.edu 36 19 50684493 50684493 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50684493 50684493 RTN2 19 G G A 39 ZFX 7543 genome.wustl.edu 36 X 24136297 24136297 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0935-01 TCGA-10-0935-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24136297 24136297 ZFX 23 G G A 40