Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context DLGAP3 58512 broad.mit.edu 36 1 35107237 35107237 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 35107237 35107237 DLGAP3 1 C C T 19 PROX1 5629 broad.mit.edu 36 1 212236888 212236888 + Silent SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 212236888 212236888 PROX1 1 C C T 25 CCNJ 54619 broad.mit.edu 36 10 97807950 97807950 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97807950 97807950 CCNJ 10 G G A 45 DNMBP 23268 broad.mit.edu 36 10 101636204 101636204 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101636204 101636204 DNMBP 10 C C T 23 ROBO3 64221 broad.mit.edu 36 11 124253130 124253130 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124253130 124253130 ROBO3 11 C C T 27 ANKLE2 23141 broad.mit.edu 36 12 131814717 131814717 + Silent SNP C C A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 131814717 131814717 ANKLE2 12 C C A 17 FLJ10357 55701 broad.mit.edu 36 14 20620094 20620094 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 20620094 20620094 FLJ10357 14 G G T 39 MTMR10 54893 broad.mit.edu 36 15 29070994 29070994 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29070994 29070994 MTMR10 15 G G A 41 TBC1D2B 23102 broad.mit.edu 36 15 76077690 76077690 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76077690 76077690 TBC1D2B 15 C C T 31 USP31 57478 broad.mit.edu 36 16 22987056 22987056 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22987056 22987056 USP31 16 C C T 32 VMO1 284013 broad.mit.edu 36 17 4636339 4636339 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4636339 4636339 VMO1 17 G G A 38 TBXA2R 6915 broad.mit.edu 36 19 3546862 3546863 + Missense_Mutation DNP TG TG CA novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 3546862 3546863 TBXA2R 19 TG TG CA 59 SMARCA4 6597 broad.mit.edu 36 19 10995230 10995230 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 10995230 10995230 SMARCA4 19 C C T 23 ZNF714 148206 broad.mit.edu 36 19 21092186 21092186 + Silent SNP T T A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 21092186 21092186 ZNF714 19 T T A 56 PRX 57716 broad.mit.edu 36 19 45594452 45594452 + Silent SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 45594452 45594452 PRX 19 C C T 31 SRD5A2 6716 broad.mit.edu 36 2 31612317 31612317 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 T C T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 31612317 31612317 SRD5A2 2 T T C 52 HDAC4 9759 broad.mit.edu 36 2 239776646 239776647 + Missense_Mutation DNP CA CA AT novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 239776646 239776647 HDAC4 2 CA CA AT 21 DCUN1D4 23142 broad.mit.edu 36 4 52438706 52438706 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52438706 52438706 DCUN1D4 4 C C T 31 TNRC18B 84629 broad.mit.edu 36 7 5318829 5318830 + Missense_Mutation DNP TT TT CA novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 5318829 5318830 TNRC18B 7 TT TT CA 56 TNS3 64759 broad.mit.edu 36 7 47284306 47284306 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47284306 47284306 TNS3 7 T T C 59 XKR6 286046 broad.mit.edu 36 8 10793071 10793071 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 10793071 10793071 XKR6 8 C C T 19 IKBKB 3551 broad.mit.edu 36 8 42299098 42299098 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42299098 42299098 IKBKB 8 G G A 41 PKHD1L1 93035 broad.mit.edu 36 8 110524400 110524400 + Silent SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Silent SNP 110524400 110524400 PKHD1L1 8 C C T 27 REXO4 57109 broad.mit.edu 36 9 135272783 135272783 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135272783 135272783 REXO4 9 C C G 21 QSOX2 169714 broad.mit.edu 36 9 138277253 138277253 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138277253 138277253 QSOX2 9 C C T 22 TP53 7157 broad.mit.edu 36 17 7517845 7517845 + Missense_Mutation SNP C C T rs28934576 Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7517845 7517845 TP53 17 C C T 19 TP53 7157 broad.mit.edu 36 17 7518263 7518263 + Missense_Mutation SNP C C T rs11540652 byHapMap TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Missense_Mutation SNP 7518263 7518263 TP53 17 C C T 23 PDE4DIP 9659 broad.mit.edu 36 1 143593938 143593939 + Frame_Shift_Ins INS - G - novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 143593938 143593939 PDE4DIP 1 - G - 5 NBPF14 25832 broad.mit.edu 36 1 146482253 146482257 + Frame_Shift_Del DEL CATGT - CATGT novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 146482253 146482257 NBPF14 1 CATGT - CATGT 21 KAT2A 2648 broad.mit.edu 36 17 37519630 37519652 + Splice_Site_Del DEL TGGAGAGAAGAGCCGGGCTGGGG - TGGAGAGAAGAGCCGGGCTGGGG novel Unknown TCGA-10-0934-01 TCGA-10-0934-11 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 37519630 37519652 KAT2A 17 TGGAGAGAAGAGCCGGGCTGGGG - TGGAGAGAAGAGCCGGGCTGGGG 55