Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PRPF4B 8899 genome.wustl.edu 36 6 3977297 3977297 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 3977297 3977297 PRPF4B 6 C C T 19 OTOP1 133060 genome.wustl.edu 36 4 4241584 4241584 + Silent SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 4241584 4241584 OTOP1 4 G G A 35 RASSF2 9770 genome.wustl.edu 36 20 4714926 4714926 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4714926 4714926 RASSF2 20 G G C 45 TP53 7157 genome.wustl.edu 36 17 7517845 7517845 + Missense_Mutation SNP C T T rs28934576 Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517845 7517845 TP53 17 C T T 19 ODF4 146852 genome.wustl.edu 36 17 8189457 8189457 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8189457 8189457 ODF4 17 T T A 50 PLOD1 5351 genome.wustl.edu 36 1 11939569 11939569 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11939569 11939569 PLOD1 1 G G A 40 C18orf1 753 genome.wustl.edu 36 18 13428245 13428245 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13428245 13428245 C18orf1 18 T T A 59 FAM105A 54491 genome.wustl.edu 36 5 14662106 14662106 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14662106 14662106 FAM105A 5 G G A 37 PGLYRP2 114770 genome.wustl.edu 36 19 15448150 15448150 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15448150 15448150 PGLYRP2 19 C C A 18 CCDC144A 9720 genome.wustl.edu 36 17 16551563 16551563 + Silent SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 16551563 16551563 CCDC144A 17 C C T 27 KIF13A 63971 genome.wustl.edu 36 6 17942225 17942225 + Silent SNP T T C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 17942225 17942225 KIF13A 6 T T C 56 PRPS1L1 221823 genome.wustl.edu 36 7 18033786 18033786 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18033786 18033786 PRPS1L1 7 G G A 38 OSBPL1A 114876 genome.wustl.edu 36 18 20030112 20030112 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20030112 20030112 OSBPL1A 18 C C G 28 MACC1 346389 genome.wustl.edu 36 7 20166166 20166166 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20166166 20166166 MACC1 7 A A T 9 SLCO1C1 53919 genome.wustl.edu 36 12 20781364 20781364 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20781364 20781364 SLCO1C1 12 G G A 46 C17orf42 79736 genome.wustl.edu 36 17 26251689 26251689 + Silent SNP T T G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 26251689 26251689 C17orf42 17 T T G 49 MYO3A 53904 genome.wustl.edu 36 10 26503397 26503397 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26503397 26503397 MYO3A 10 C C T 17 KCNA4 3739 genome.wustl.edu 36 11 29989393 29989393 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29989393 29989393 KCNA4 11 G G T 44 NOTCH4 4855 genome.wustl.edu 36 6 32296287 32296287 + Silent SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32296287 32296287 NOTCH4 6 C C G 29 DMD 1756 genome.wustl.edu 36 X 32493821 32493821 + Silent SNP G T T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 32493821 32493821 DMD 23 G T T 43 FEZ2 9637 genome.wustl.edu 36 2 36659442 36659442 + Nonsense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 36659442 36659442 FEZ2 2 G G T 36 TBC1D1 23216 genome.wustl.edu 36 4 37580520 37580520 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 37580520 37580520 TBC1D1 4 C C T 29 LRFN5 145581 genome.wustl.edu 36 14 41430900 41430900 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41430900 41430900 LRFN5 14 G G C 34 SLC30A9 10463 genome.wustl.edu 36 4 41714898 41714898 + Silent SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 41714898 41714898 SLC30A9 4 C C T 25 CCDC36 339834 genome.wustl.edu 36 3 49269671 49269671 + Silent SNP T T C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49269671 49269671 CCDC36 3 T T C 52 RBM6 10180 genome.wustl.edu 36 3 50078793 50078793 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50078793 50078793 RBM6 3 C C G 26 SCN8A 6334 genome.wustl.edu 36 12 50431564 50431564 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50431564 50431564 SCN8A 12 G G A 40 C6orf142 90523 genome.wustl.edu 36 6 54097351 54097351 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54097351 54097351 C6orf142 6 A A G 2 BICC1 80114 genome.wustl.edu 36 10 60219104 60219104 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60219104 60219104 BICC1 10 C C A 22 PACS1 55690 genome.wustl.edu 36 11 65759368 65759368 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 65759368 65759368 PACS1 11 C C G 27 IL12RB2 3595 genome.wustl.edu 36 1 67560092 67560092 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67560092 67560092 IL12RB2 1 T T G 64 MYBL1 4603 genome.wustl.edu 36 8 67655103 67655103 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67655103 67655103 MYBL1 8 A A G 8 DTX2 113878 genome.wustl.edu 36 7 75949844 75949844 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75949844 75949844 DTX2 7 G G T 37 BNC1 646 genome.wustl.edu 36 15 81726708 81726708 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 81726708 81726708 BNC1 15 G G A 37 NECAB2 54550 genome.wustl.edu 36 16 82592958 82592958 + Silent SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 82592958 82592958 NECAB2 16 G G A 40 ENTPD1 953 genome.wustl.edu 36 10 97614610 97614610 + Splice_Site_SNP SNP T T C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 97614610 97614610 ENTPD1 10 T T C 57 VPS13B 157680 genome.wustl.edu 36 8 100197249 100197249 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100197249 100197249 VPS13B 8 A A G 8 SASS6 163786 genome.wustl.edu 36 1 100345785 100345785 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100345785 100345785 SASS6 1 G G A 46 NALCN 259232 genome.wustl.edu 36 13 100828997 100828997 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100828997 100828997 NALCN 13 A A C 2 ITGBL1 9358 genome.wustl.edu 36 13 101018076 101018076 + Silent SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 101018076 101018076 ITGBL1 13 G G A 36 SLC5A7 60482 genome.wustl.edu 36 2 107989086 107989086 + Silent SNP A A C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107989086 107989086 SLC5A7 2 A A C 5 KIAA1919 91749 genome.wustl.edu 36 6 111694599 111694599 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111694599 111694599 KIAA1919 6 C C A 22 SVEP1 79987 genome.wustl.edu 36 9 112352170 112352170 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112352170 112352170 SVEP1 9 T T A 56 MOV10 4343 genome.wustl.edu 36 1 113040590 113040590 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113040590 113040590 MOV10 1 C C T 31 ZNF828 283489 genome.wustl.edu 36 13 114107684 114107684 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114107684 114107684 ZNF828 13 G G C 33 BCL9L 283149 genome.wustl.edu 36 11 118277624 118277624 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118277624 118277624 BCL9L 11 G G A 38 ZC3HAV1 56829 genome.wustl.edu 36 7 138419274 138419274 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 138419274 138419274 ZC3HAV1 7 G G T 44 CNTNAP2 26047 genome.wustl.edu 36 7 147475602 147475602 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 147475602 147475602 CNTNAP2 7 C C A 21 TMLHE 55217 genome.wustl.edu 36 X 154407449 154407449 + Missense_Mutation SNP C T T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 154407449 154407449 TMLHE 23 C T T 19 SLITRK3 22865 genome.wustl.edu 36 3 166388959 166388959 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 166388959 166388959 SLITRK3 3 G G A 39 PDE11A 50940 genome.wustl.edu 36 2 178587324 178587324 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178587324 178587324 PDE11A 2 G G A 38 TTN 7273 genome.wustl.edu 36 2 179103896 179103896 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179103896 179103896 TTN 2 G G A 47 TTN 7273 genome.wustl.edu 36 2 179324089 179324089 + Silent SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 179324089 179324089 TTN 2 C C T 24 COL3A1 1281 genome.wustl.edu 36 2 189564486 189564486 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 189564486 189564486 COL3A1 2 G G A 41 LHX9 56956 genome.wustl.edu 36 1 196153694 196153694 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 196153694 196153694 LHX9 1 A A G 7 ESRRG 2104 genome.wustl.edu 36 1 214917271 214917271 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 214917271 214917271 ESRRG 1 G G A 37 KIAA1486 57624 genome.wustl.edu 36 2 225981947 225981947 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 225981947 225981947 KIAA1486 2 T T C 52 NLRP3 114548 genome.wustl.edu 36 1 245654347 245654347 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245654347 245654347 NLRP3 1 C C G 27 TCERG1L 256536 genome.wustl.edu 36 10 132822665 132822665 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132822665 132822665 TCERG1L 10 C C G 24 DAGLA 747 genome.wustl.edu 36 11 61265376 61265376 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61265376 61265376 DAGLA 11 A A C 10 ATP5EP2 genome.wustl.edu 36 13 27417532 27417532 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27417532 27417532 ATP5EP2 13 G G T 48 NOD2 64127 genome.wustl.edu 36 16 49303034 49303034 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 49303034 49303034 NOD2 16 C C T 21 MBD1 4152 genome.wustl.edu 36 18 46054167 46054167 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46054167 46054167 MBD1 18 C C T 19 SHOX2 6474 genome.wustl.edu 36 3 159303336 159303336 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159303336 159303336 SHOX2 3 G G A 38 DRD1 1812 genome.wustl.edu 36 5 174802483 174802483 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 174802483 174802483 DRD1 5 G G T 35 DLL1 28514 genome.wustl.edu 36 6 170439310 170439310 + Silent SNP A A G novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 170439310 170439310 DLL1 6 A A G 6 PDIA4 9601 genome.wustl.edu 36 7 148332034 148332034 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1542-01 TCGA-04-1542-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 148332034 148332034 PDIA4 7 G G C 47 ASNA1 439 genome.wustl.edu 36 19 12717529 12717529 + Missense_Mutation SNP C C T Unknown TCGA-04-1542-01 TCGA-04-1542-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12717529 12717529 ASNA1 19 C C T 23