Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context EVC 2121 genome.wustl.edu 36 4 5784250 5784250 + Silent SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5784250 5784250 EVC 4 G G T 43 TP53 7157 genome.wustl.edu 36 17 7518305 7518305 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518305 7518305 TP53 17 T T C 57 SETD5 55209 genome.wustl.edu 36 3 9450570 9450570 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9450570 9450570 SETD5 3 G G A 34 RDH8 50700 genome.wustl.edu 36 19 9988889 9988889 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9988889 9988889 RDH8 19 T T A 55 XPC 7508 genome.wustl.edu 36 3 14186991 14186991 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14186991 14186991 XPC 3 G G T 48 MYH11 4629 genome.wustl.edu 36 16 15743116 15743116 + Splice_Site_SNP SNP A A T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 15743116 15743116 MYH11 16 A A T 14 EPS15L1 58513 genome.wustl.edu 36 19 16333718 16333718 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16333718 16333718 EPS15L1 19 C C G 29 PDE4C 5143 genome.wustl.edu 36 19 18188666 18188666 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18188666 18188666 PDE4C 19 A A G 7 DNAH3 55567 genome.wustl.edu 36 16 20970551 20970551 + Silent SNP A A G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 20970551 20970551 DNAH3 16 A A G 8 OR4E2 26686 genome.wustl.edu 36 14 21204039 21204039 + Silent SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21204039 21204039 OR4E2 14 C C G 29 MYO18A 399687 genome.wustl.edu 36 17 24442013 24442013 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24442013 24442013 MYO18A 17 C C G 30 DFNA5 1687 genome.wustl.edu 36 7 24750786 24750786 + Silent SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 24750786 24750786 DFNA5 7 G G A 38 DNMT3A 1788 genome.wustl.edu 36 2 25310663 25310663 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25310663 25310663 DNMT3A 2 C C T 25 ITPR2 3709 genome.wustl.edu 36 12 26463359 26463359 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26463359 26463359 ITPR2 12 T T G 59 DEPDC5 9681 genome.wustl.edu 36 22 30536507 30536507 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30536507 30536507 DEPDC5 22 C C T 28 C20orf70 140683 genome.wustl.edu 36 20 31224419 31224419 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31224419 31224419 C20orf70 20 G G A 44 TXLNA 200081 genome.wustl.edu 36 1 32433268 32433268 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32433268 32433268 TXLNA 1 G G T 43 CLASP2 23122 genome.wustl.edu 36 3 33518188 33518188 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33518188 33518188 CLASP2 3 T T A 50 EIF3L 51386 genome.wustl.edu 36 22 36596199 36596199 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36596199 36596199 EIF3L 22 C C G 30 C5orf42 65250 genome.wustl.edu 36 5 37205347 37205347 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37205347 37205347 C5orf42 5 G G T 33 DNAH8 1769 genome.wustl.edu 36 6 39106034 39106034 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39106034 39106034 DNAH8 6 A A T 3 PRPH2 5961 genome.wustl.edu 36 6 42797997 42797997 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42797997 42797997 PRPH2 6 T T A 56 TRAPPC10 7109 genome.wustl.edu 36 21 44276400 44276400 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44276400 44276400 TRAPPC10 21 G G A 44 GNPDA2 132789 genome.wustl.edu 36 4 44413920 44413920 + Nonsense_Mutation SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 44413920 44413920 GNPDA2 4 T T A 64 ST18 9705 genome.wustl.edu 36 8 53255238 53255238 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53255238 53255238 ST18 8 C C T 27 NUP93 9688 genome.wustl.edu 36 16 55423717 55423717 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55423717 55423717 NUP93 16 G G T 36 OR5AK3P genome.wustl.edu 36 11 56495874 56495874 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56495874 56495874 OR5AK3P 11 G G A 48 PECAM1 5175 genome.wustl.edu 36 17 59791381 59791381 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59791381 59791381 PECAM1 17 C C T 20 NLRP13 126204 genome.wustl.edu 36 19 61099174 61099174 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 61099174 61099174 NLRP13 19 C C A 25 ZNF304 57343 genome.wustl.edu 36 19 62559698 62559698 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62559698 62559698 ZNF304 19 T T C 53 RIMS1 22999 genome.wustl.edu 36 6 72735448 72735448 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72735448 72735448 RIMS1 6 C C G 17 PSAP 5660 genome.wustl.edu 36 10 73251668 73251668 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73251668 73251668 PSAP 10 G G A 43 ABCB4 5244 genome.wustl.edu 36 7 86870405 86870405 + Silent SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 86870405 86870405 ABCB4 7 C C T 21 GPR98 84059 genome.wustl.edu 36 5 90088717 90088717 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90088717 90088717 GPR98 5 G G C 45 OMD 4958 genome.wustl.edu 36 9 94218967 94218967 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94218967 94218967 OMD 9 G G T 35 ENSG00000211964 genome.wustl.edu 36 14 106064967 106064967 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106064967 106064967 ENSG00000211964 14 G G T 36 NPAT 4863 genome.wustl.edu 36 11 107537471 107537471 + Silent SNP T T C novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107537471 107537471 NPAT 11 T T C 63 SULT1C2 6819 genome.wustl.edu 36 2 108287559 108287559 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108287559 108287559 SULT1C2 2 A A G 11 AKNAD1 254268 genome.wustl.edu 36 1 109196288 109196288 + Silent SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 109196288 109196288 AKNAD1 1 C C T 31 ADORA3 140 genome.wustl.edu 36 1 111847261 111847261 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111847261 111847261 ADORA3 1 A A T 9 CSMD3 114788 genome.wustl.edu 36 8 113392466 113392466 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113392466 113392466 CSMD3 8 C C A 31 VTI1A 143187 genome.wustl.edu 36 10 114565097 114565097 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114565097 114565097 VTI1A 10 C C G 24 LVRN 206338 genome.wustl.edu 36 5 115364028 115364028 + Splice_Site_SNP SNP G G C novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 115364028 115364028 LVRN 5 G G C 35 KIAA1210 57481 genome.wustl.edu 36 X 118123066 118123066 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118123066 118123066 KIAA1210 23 A A T 3 POLQ 10721 genome.wustl.edu 36 3 122690091 122690091 + Silent SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 122690091 122690091 POLQ 3 T T A 57 FAM91A1 157769 genome.wustl.edu 36 8 124881019 124881019 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124881019 124881019 FAM91A1 8 C C G 18 AIFM1 9131 genome.wustl.edu 36 X 129093440 129093440 + Silent SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 129093440 129093440 AIFM1 23 G G T 39 PCDHGC5 56097 genome.wustl.edu 36 5 140849910 140849910 + Missense_Mutation SNP C A A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140849910 140849910 PCDHGC5 5 C A A 30 UBE3C 9690 genome.wustl.edu 36 7 156733849 156733849 + Silent SNP G G A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 156733849 156733849 UBE3C 7 G G A 34 SCN1A 6323 genome.wustl.edu 36 2 166560768 166560768 + Splice_Site_SNP SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 166560768 166560768 SCN1A 2 C C T 20 PPIG 9360 genome.wustl.edu 36 2 170201593 170201593 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 170201593 170201593 PPIG 2 A A G 11 FAM20B 9917 genome.wustl.edu 36 1 177300122 177300122 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 177300122 177300122 FAM20B 1 G G T 42 PTGS2 5743 genome.wustl.edu 36 1 184912345 184912345 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184912345 184912345 PTGS2 1 C C T 21 ACSL1 2180 genome.wustl.edu 36 4 185916019 185916019 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 185916019 185916019 ACSL1 4 C C T 21 ARHGEF10L 55160 genome.wustl.edu 36 1 17823526 17823526 + Missense_Mutation SNP G G A Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17823526 17823526 ARHGEF10L 1 G G A 46 EVI5 7813 genome.wustl.edu 36 1 92751926 92751926 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92751926 92751926 EVI5 1 G G T 43 MOGAT2 80168 genome.wustl.edu 36 11 75106597 75106597 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75106597 75106597 MOGAT2 11 C C A 26 MOGAT2 80168 genome.wustl.edu 36 11 75116767 75116767 + Missense_Mutation SNP G G A Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75116767 75116767 MOGAT2 11 G G A 46 MEFV 4210 genome.wustl.edu 36 16 3239649 3239649 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3239649 3239649 MEFV 16 C C T 27 PDIA5 10954 genome.wustl.edu 36 3 124362860 124362860 + Silent SNP T T A novel Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124362860 124362860 PDIA5 3 T T A 63 SLC12A2 6558 genome.wustl.edu 36 5 127512432 127512432 + Missense_Mutation SNP T T G Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T G T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127512432 127512432 SLC12A2 5 T T G 56 CHST9 83539 genome.wustl.edu 36 18 22750325 22750325 + Missense_Mutation SNP C C T Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22750325 22750325 CHST9 18 C C T 19 TMEM59L 25789 genome.wustl.edu 36 19 18588888 18588888 + Missense_Mutation SNP C C A Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C A C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18588888 18588888 TMEM59L 19 C C A 22 ATP13A1 57130 genome.wustl.edu 36 19 19617787 19617787 + Nonsense_Mutation SNP G G A Unknown TCGA-04-1361-01 TCGA-04-1361-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 19617787 19617787 ATP13A1 19 G G A 46 MST4 51765 genome.wustl.edu 36 X 131034719 131034719 + Silent SNP C C T Unknown TCGA-04-1361-01 TCGA-04-1361-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 131034719 131034719 MST4 23 C C T 31 PFKFB1 5207 genome.wustl.edu 36 X 55037157 55037157 + Silent SNP T T G Unknown TCGA-04-1361-01 TCGA-04-1361-11 T T T G T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 55037157 55037157 PFKFB1 23 T T G 55