Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context CPXM1 56265 genome.wustl.edu 36 20 2726850 2726850 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2726850 2726850 CPXM1 20 G A A 46 NOP2 4839 genome.wustl.edu 36 12 6545552 6545552 + Silent SNP A C C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 A A C C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6545552 6545552 NOP2 12 A C C 7 TP53 7157 genome.wustl.edu 36 17 7518264 7518264 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518264 7518264 TP53 17 G A A 39 ALOX15B 247 genome.wustl.edu 36 17 7889617 7889617 + Missense_Mutation SNP C T T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7889617 7889617 ALOX15B 17 C T T 26 P2RY11 5032 genome.wustl.edu 36 19 10085364 10085364 + Silent SNP G G C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 10085364 10085364 P2RY11 19 G G C 44 PRAMEF12 390999 genome.wustl.edu 36 1 12759868 12759868 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12759868 12759868 PRAMEF12 1 C C A 20 CELA2A 63036 genome.wustl.edu 36 1 15665172 15665172 + Silent SNP C C T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 15665172 15665172 CELA2A 1 C C T 27 CUBN 8029 genome.wustl.edu 36 10 17020969 17020969 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17020969 17020969 CUBN 10 C C G 24 ADAMTSL1 92949 genome.wustl.edu 36 9 18612344 18612344 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18612344 18612344 ADAMTSL1 9 A A C 1 ENSG00000181984 0 genome.wustl.edu 36 15 19037934 19037934 + Silent SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 19037934 19037934 ENSG00000181984 15 G A A 46 TNRC6A 27327 genome.wustl.edu 36 16 24710529 24710530 + Missense DNP GG GG TT novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 GG GG GG TT GG GG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 24710529 24710530 TNRC6A 16 GG GG TT 47 HIST1H3B 8358 genome.wustl.edu 36 6 26140117 26140117 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26140117 26140117 HIST1H3B 6 C C G 31 DSC2 1824 genome.wustl.edu 36 18 26920671 26920671 + Nonsense_Mutation SNP T T A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 26920671 26920671 DSC2 18 T T A 63 LNX2 222484 genome.wustl.edu 36 13 27053767 27053767 + Missense_Mutation SNP T A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T A A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27053767 27053767 LNX2 13 T A A 62 KRTAP13-3 337960 genome.wustl.edu 36 21 30719843 30719843 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30719843 30719843 KRTAP13-3 21 T T G 51 IQCC 55721 genome.wustl.edu 36 1 32444411 32444411 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32444411 32444411 IQCC 1 C C G 19 SYNGAP1 8831 genome.wustl.edu 36 6 33518684 33518684 + Nonsense_Mutation SNP A A T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 33518684 33518684 SYNGAP1 6 A A T 1 ATP5O 539 genome.wustl.edu 36 21 34206471 34206471 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34206471 34206471 ATP5O 21 T T C 54 C6orf106 64771 genome.wustl.edu 36 6 34682583 34682583 + Silent SNP C C A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 34682583 34682583 C6orf106 6 C C A 23 UHRF1BP1 54887 genome.wustl.edu 36 6 34934072 34934072 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34934072 34934072 UHRF1BP1 6 T T A 60 ERG 2078 genome.wustl.edu 36 21 38677670 38677670 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38677670 38677670 ERG 21 G G A 37 ELL3 80237 genome.wustl.edu 36 15 41853752 41853752 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41853752 41853752 ELL3 15 G A A 39 ADAMTS20 80070 genome.wustl.edu 36 12 42132705 42132705 + Silent SNP A A G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42132705 42132705 ADAMTS20 12 A A G 7 FCGBP 8857 genome.wustl.edu 36 19 45046321 45046321 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45046321 45046321 FCGBP 19 C C T 19 GABPB1 2553 genome.wustl.edu 36 15 48383548 48383549 + Missense DNP AC TA TA novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 AC AC TA TA AC AC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 48383548 48383549 GABPB1 15 AC TA TA 6 KRT6A 3853 genome.wustl.edu 36 12 51173148 51173148 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51173148 51173148 KRT6A 12 G G C 33 MAMSTR 284358 genome.wustl.edu 36 19 53908385 53908385 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53908385 53908385 MAMSTR 19 G G A 33 C6orf142 90523 genome.wustl.edu 36 6 54203568 54203568 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54203568 54203568 C6orf142 6 C C T 29 C17orf71 55181 genome.wustl.edu 36 17 54643302 54643302 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54643302 54643302 C17orf71 17 C C T 26 EXOC5 10640 genome.wustl.edu 36 14 56768188 56768188 + Splice_Site_SNP SNP T T C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 56768188 56768188 EXOC5 14 T T C 56 PXK 54899 genome.wustl.edu 36 3 58343280 58343280 + Splice_Site_SNP SNP G G T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 58343280 58343280 PXK 3 G G T 33 ETAA1 54465 genome.wustl.edu 36 2 67485182 67485182 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67485182 67485182 ETAA1 2 C C G 29 C4orf35 85438 genome.wustl.edu 36 4 71236407 71236407 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71236407 71236407 C4orf35 4 G G C 33 ELN 2006 genome.wustl.edu 36 7 73112446 73112446 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73112446 73112446 ELN 7 G G A 34 RNF213 57674 genome.wustl.edu 36 17 75964249 75964249 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75964249 75964249 RNF213 17 T T A 54 MAGI2 9863 genome.wustl.edu 36 7 77723362 77723362 + Silent SNP C C G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 77723362 77723362 MAGI2 7 C C G 22 ZFHX4 79776 genome.wustl.edu 36 8 77926296 77926296 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77926296 77926296 ZFHX4 8 T T A 52 DLG5 9231 genome.wustl.edu 36 10 79246325 79246325 + Silent SNP T T G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 79246325 79246325 DLG5 10 T T G 54 ENSG00000204562 genome.wustl.edu 36 9 83722276 83722276 + Missense_Mutation SNP T G G novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83722276 83722276 ENSG00000204562 9 T G G 55 PSKH2 85481 genome.wustl.edu 36 8 87145407 87145407 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87145407 87145407 PSKH2 8 G G T 48 HERC5 51191 genome.wustl.edu 36 4 89626399 89626399 + Silent SNP T C C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 89626399 89626399 HERC5 4 T C C 55 CDH17 1015 genome.wustl.edu 36 8 95241470 95241470 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95241470 95241470 CDH17 8 T T C 61 AHNAK2 113146 genome.wustl.edu 36 14 104482768 104482768 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104482768 104482768 AHNAK2 14 G G T 44 DPYS 1807 genome.wustl.edu 36 8 105528874 105528874 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105528874 105528874 DPYS 8 T T C 61 LAMB1 3912 genome.wustl.edu 36 7 107379875 107379875 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107379875 107379875 LAMB1 7 G G T 46 ALPK1 80216 genome.wustl.edu 36 4 113571611 113571611 + Missense_Mutation SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113571611 113571611 ALPK1 4 G A A 35 FLI1 2313 genome.wustl.edu 36 11 128185583 128185583 + Silent SNP G G A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128185583 128185583 FLI1 11 G G A 48 OC90 729330 genome.wustl.edu 36 8 133114486 133114486 + Nonsense_Mutation SNP C C A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 133114486 133114486 OC90 8 C C A 29 GPR112 139378 genome.wustl.edu 36 X 135255177 135255177 + Missense_Mutation SNP C T T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135255177 135255177 GPR112 23 C T T 31 DENND2A 27147 genome.wustl.edu 36 7 139890930 139890930 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139890930 139890930 DENND2A 7 G G T 35 PCDHB9 56127 genome.wustl.edu 36 5 140547554 140547554 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140547554 140547554 PCDHB9 5 C C A 30 ATP10B 23120 genome.wustl.edu 36 5 159980215 159980215 + Silent SNP G A A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 159980215 159980215 ATP10B 5 G A A 47 LAMC1 3915 genome.wustl.edu 36 1 181360492 181360492 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 181360492 181360492 LAMC1 1 T T A 50 MTNR1A 4543 genome.wustl.edu 36 4 187692302 187692302 + Missense_Mutation SNP G T T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 187692302 187692302 MTNR1A 4 G T T 41 PAK2 5062 genome.wustl.edu 36 3 197993936 197993936 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 197993936 197993936 PAK2 3 G G A 41 PLD5 200150 genome.wustl.edu 36 1 240354478 240354478 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 240354478 240354478 PLD5 1 C C A 21 SLC12A3 6559 genome.wustl.edu 36 16 55471577 55471577 + Missense_Mutation SNP G T T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55471577 55471577 SLC12A3 16 G T T 42 ZFHX3 463 genome.wustl.edu 36 16 71379382 71379382 + Missense_Mutation SNP A T T novel Unknown TCGA-04-1336-01 TCGA-04-1336-11 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71379382 71379382 ZFHX3 16 A T T 10 KIFC2 90990 genome.wustl.edu 36 8 145663461 145663461 + Missense_Mutation SNP G G A Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 145663461 145663461 KIFC2 8 G G A 34 ASTN1 460 genome.wustl.edu 36 1 175181690 175181705 + Frame_Shift_Del DEL TGTTCCTTTCAGCACC TGTTCCTTTCAGCACC - Unknown TCGA-04-1336-01 TCGA-04-1336-11 TGTTCCTTTCAGCACC TGTTCCTTTCAGCACC TGTTCCTTTCAGCACC - TGTTCCTTTCAGCACC TGTTCCTTTCAGCACC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 175181690 175181705 ASTN1 1 TGTTCCTTTCAGCACC TGTTCCTTTCAGCACC - 51 SFPQ 6421 genome.wustl.edu 36 1 35427386 35427394 + In_Frame_Del DEL GATTTGCCT GATTTGCCT - Unknown TCGA-04-1336-01 TCGA-04-1336-11 GATTTGCCT GATTTGCCT GATTTGCCT - GATTTGCCT GATTTGCCT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 35427386 35427394 SFPQ 1 GATTTGCCT GATTTGCCT - 33 SLC1A2 6506 genome.wustl.edu 36 11 35265049 35265055 + Frame_Shift_Del DEL GAAAGGT GAAAGGT - Unknown TCGA-04-1336-01 TCGA-04-1336-11 GAAAGGT GAAAGGT GAAAGGT - GAAAGGT GAAAGGT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 35265049 35265055 SLC1A2 11 GAAAGGT GAAAGGT - 37 SHROOM3 57619 genome.wustl.edu 36 4 77880205 77880214 + Frame_Shift_Del DEL TCTTCCAGGC TCTTCCAGGC - Unknown TCGA-04-1336-01 TCGA-04-1336-11 TCTTCCAGGC TCTTCCAGGC TCTTCCAGGC - TCTTCCAGGC TCTTCCAGGC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 77880205 77880214 SHROOM3 4 TCTTCCAGGC TCTTCCAGGC - 50 CSMD1 64478 genome.wustl.edu 36 8 2863527 2863531 + Frame_Shift_Del DEL CGTTC CGTTC - Unknown TCGA-04-1336-01 TCGA-04-1336-11 CGTTC CGTTC CGTTC - CGTTC CGTTC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 2863527 2863531 CSMD1 8 CGTTC CGTTC - 19 MYO19 80179 genome.wustl.edu 36 17 31957639 31957639 + Silent SNP C C A Unknown TCGA-04-1336-01 TCGA-04-1336-11 C C C A C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 31957639 31957639 MYO19 17 C C A 29 MYT1 4661 genome.wustl.edu 36 20 62342189 62342189 + Missense_Mutation SNP G G C Unknown TCGA-04-1336-01 TCGA-04-1336-11 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62342189 62342189 MYT1 20 G G C 41