Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context BAI2 576 broad.mit.edu 36 1 31974808 31974808 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31974808 31974808 BAI2 1 C C G 23 LRRC41 10489 broad.mit.edu 36 1 46524584 46524584 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 46524584 46524584 LRRC41 1 C C T 31 C1orf173 127254 broad.mit.edu 36 1 74828082 74828082 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- Broad Missense_Mutation SNP 74828082 74828082 C1orf173 1 T T G 54 SSX2IP 117178 broad.mit.edu 36 1 84900740 84900740 + Silent SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 84900740 84900740 SSX2IP 1 A A G 14 NTNG1 22854 broad.mit.edu 36 1 107668441 107668441 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 107668441 107668441 NTNG1 1 G G A 48 PGLYRP3 114771 broad.mit.edu 36 1 151541551 151541551 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 151541551 151541551 PGLYRP3 1 G G T 41 FCRL5 83416 broad.mit.edu 36 1 155783467 155783467 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 155783467 155783467 FCRL5 1 A A C 16 FBXO28 23219 broad.mit.edu 36 1 222388418 222388418 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 222388418 222388418 FBXO28 1 A A T 1 OR2M2 391194 broad.mit.edu 36 1 246410342 246410342 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 246410342 246410342 OR2M2 1 G G A 47 MKX 283078 broad.mit.edu 36 10 28063690 28063690 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28063690 28063690 MKX 10 C C A 22 LZTS2 84445 broad.mit.edu 36 10 102753417 102753417 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102753417 102753417 LZTS2 10 C C G 30 TMEM132A 54972 broad.mit.edu 36 11 60460030 60460030 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60460030 60460030 TMEM132A 11 C C G 21 MRPL11 65003 broad.mit.edu 36 11 65961438 65961438 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65961438 65961438 MRPL11 11 A A G 7 C11orf30 56946 broad.mit.edu 36 11 75885041 75885041 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 75885041 75885041 C11orf30 11 G G C 36 GRAMD1B 57476 broad.mit.edu 36 11 122985727 122985727 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122985727 122985727 GRAMD1B 11 C C T 30 FEZ1 9638 broad.mit.edu 36 11 124864833 124864833 + Silent SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 124864833 124864833 FEZ1 11 G G C 35 CAPRIN2 65981 broad.mit.edu 36 12 30797725 30797725 + Silent SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 30797725 30797725 CAPRIN2 12 C C T 30 KRT6A 3853 broad.mit.edu 36 12 51171200 51171200 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51171200 51171200 KRT6A 12 C C T 27 CSAD 51380 broad.mit.edu 36 12 51840202 51840202 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 51840202 51840202 CSAD 12 G G A 38 DDIT3 1649 broad.mit.edu 36 12 56197383 56197383 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 56197383 56197383 DDIT3 12 A A C 7 C12orf51 283450 broad.mit.edu 36 12 111092551 111092551 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111092551 111092551 C12orf51 12 C C A 32 C12orf49 79794 broad.mit.edu 36 12 115642535 115642535 + Silent SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 115642535 115642535 C12orf49 12 G G A 34 BRCA2 675 broad.mit.edu 36 13 31808625 31808625 + Nonsense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 31808625 31808625 BRCA2 13 C C A 26 ABHD13 84945 broad.mit.edu 36 13 107680236 107680236 + Silent SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 107680236 107680236 ABHD13 13 A A G 6 CPSF2 53981 broad.mit.edu 36 14 91691307 91691307 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 91691307 91691307 CPSF2 14 G G T 45 ADSSL1 122622 broad.mit.edu 36 14 104283642 104283642 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104283642 104283642 ADSSL1 14 T T C 58 AHNAK2 113146 broad.mit.edu 36 14 104491545 104491545 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104491545 104491545 AHNAK2 14 C C G 30 NEDD4 4734 broad.mit.edu 36 15 53995840 53995840 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 53995840 53995840 NEDD4 15 G G T 33 CA12 771 broad.mit.edu 36 15 61421330 61421330 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 61421330 61421330 CA12 15 T T G 60 PSMA4 5685 broad.mit.edu 36 15 76622003 76622003 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76622003 76622003 PSMA4 15 A A C 12 C15orf42 90381 broad.mit.edu 36 15 87946051 87946051 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87946051 87946051 C15orf42 15 G G A 48 SELS 55829 broad.mit.edu 36 15 99630502 99630502 + Silent SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 99630502 99630502 SELS 15 G G C 34 FLYWCH2 114984 broad.mit.edu 36 16 2889112 2889112 + Silent SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2889112 2889112 FLYWCH2 16 C C T 20 CLDN9 9080 broad.mit.edu 36 16 3003590 3003590 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3003590 3003590 CLDN9 16 G G C 41 CCDC102A 92922 broad.mit.edu 36 16 56117392 56117392 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56117392 56117392 CCDC102A 16 G G T 40 TP53 7157 broad.mit.edu 36 17 7517747 7517747 + Nonsense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Nonsense_Mutation SNP 7517747 7517747 TP53 17 G G A 38 ALOXE3 59344 broad.mit.edu 36 17 7959091 7959091 + Silent SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7959091 7959091 ALOXE3 17 G G A 33 NEK8 284086 broad.mit.edu 36 17 24089284 24089284 + Silent SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 24089284 24089284 NEK8 17 A A G 7 NF1 4763 broad.mit.edu 36 17 26609644 26609644 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26609644 26609644 NF1 17 A A G 1 EMILIN2 84034 broad.mit.edu 36 18 2880859 2880859 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2880859 2880859 EMILIN2 18 C C A 19 DSEL 92126 broad.mit.edu 36 18 63329428 63329428 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63329428 63329428 DSEL 18 A A T 1 DSEL 92126 broad.mit.edu 36 18 63332719 63332719 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63332719 63332719 DSEL 18 G G A 48 PIP5K1C 23396 broad.mit.edu 36 19 3596970 3596970 + Splice_Site_SNP SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 3596970 3596970 PIP5K1C 19 A A G 14 PLEKHF1 79156 broad.mit.edu 36 19 34856998 34856998 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34856998 34856998 PLEKHF1 19 G G A 43 ACTN4 81 broad.mit.edu 36 19 43896990 43896990 + Silent SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 43896990 43896990 ACTN4 19 C C A 29 MAP4K3 8491 broad.mit.edu 36 2 39406867 39406867 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 39406867 39406867 MAP4K3 2 C C T 29 C2orf78 388960 broad.mit.edu 36 2 73896358 73896358 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73896358 73896358 C2orf78 2 G G C 41 MALL 7851 broad.mit.edu 36 2 110202545 110202545 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110202545 110202545 MALL 2 T T A 58 LRP2 4036 broad.mit.edu 36 2 169771586 169771586 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 169771586 169771586 LRP2 2 A A G 5 LRP2 4036 broad.mit.edu 36 2 169855736 169855736 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 169855736 169855736 LRP2 2 C C T 17 TTN 7273 broad.mit.edu 36 2 179165469 179165469 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 179165469 179165469 TTN 2 G G A 41 MAP2 4133 broad.mit.edu 36 2 210226239 210226239 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 210226239 210226239 MAP2 2 C C A 29 STK36 27148 broad.mit.edu 36 2 219267522 219267522 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 219267522 219267522 STK36 2 G G T 47 NOP56 10528 broad.mit.edu 36 20 2584044 2584044 + Nonsense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 2584044 2584044 NOP56 20 C C T 21 FAM83D 81610 broad.mit.edu 36 20 37014238 37014238 + Silent SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 37014238 37014238 FAM83D 20 C C T 21 LDOC1L 84247 broad.mit.edu 36 22 43271643 43271643 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43271643 43271643 LDOC1L 22 A A T 12 BRPF1 7862 broad.mit.edu 36 3 9757526 9757526 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 9757526 9757526 BRPF1 3 C C G 17 WNT7A 7476 broad.mit.edu 36 3 13871087 13871087 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 13871087 13871087 WNT7A 3 C C A 32 CSRNP1 64651 broad.mit.edu 36 3 39160375 39160375 + Silent SNP A A T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39160375 39160375 CSRNP1 3 A A T 7 RRP9 9136 broad.mit.edu 36 3 51950503 51950503 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51950503 51950503 RRP9 3 C C A 32 CPOX 1371 broad.mit.edu 36 3 99792569 99792569 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 99792569 99792569 CPOX 3 C C A 30 MYLK 4638 broad.mit.edu 36 3 124910306 124910306 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 124910306 124910306 MYLK 3 G G A 40 AMOTL2 51421 broad.mit.edu 36 3 135569177 135569177 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135569177 135569177 AMOTL2 3 C C G 20 TBL1XR1 79718 broad.mit.edu 36 3 178252132 178252132 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 178252132 178252132 TBL1XR1 3 G G C 48 SORCS2 57537 broad.mit.edu 36 4 7766982 7766982 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7766982 7766982 SORCS2 4 G G A 39 KIAA1109 84162 broad.mit.edu 36 4 123500233 123500233 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123500233 123500233 KIAA1109 4 T T C 62 PAPD7 11044 broad.mit.edu 36 5 6801679 6801679 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 6801679 6801679 PAPD7 5 C C G 30 TRIO 7204 broad.mit.edu 36 5 14350204 14350204 + Silent SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 14350204 14350204 TRIO 5 C C G 25 HEATR7B2 133558 broad.mit.edu 36 5 41085273 41085273 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41085273 41085273 HEATR7B2 5 G G T 36 NDUFAF2 91942 broad.mit.edu 36 5 60276887 60276887 + Silent SNP A A T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 60276887 60276887 NDUFAF2 5 A A T 5 RAD50 10111 broad.mit.edu 36 5 131953269 131953269 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 131953269 131953269 RAD50 5 G G C 33 TRPC7 57113 broad.mit.edu 36 5 135720346 135720346 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 135720346 135720346 TRPC7 5 T T A 58 TCOF1 6949 broad.mit.edu 36 5 149733928 149733928 + Splice_Site_SNP SNP A A C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 149733928 149733928 TCOF1 5 A A C 7 KCNK17 89822 broad.mit.edu 36 6 39380357 39380357 + Silent SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 39380357 39380357 KCNK17 6 G G A 33 COL9A1 1297 broad.mit.edu 36 6 71040482 71040482 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71040482 71040482 COL9A1 6 G G A 38 HACE1 57531 broad.mit.edu 36 6 105397853 105397853 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105397853 105397853 HACE1 6 T T C 49 NCOA7 135112 broad.mit.edu 36 6 126278190 126278190 + Silent SNP A A C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 A C A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 126278190 126278190 NCOA7 6 A A C 8 LATS1 9113 broad.mit.edu 36 6 150024892 150024892 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 150024892 150024892 LATS1 6 C C G 32 KLHL7 55975 broad.mit.edu 36 7 23180351 23180351 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23180351 23180351 KLHL7 7 C C G 26 TNS3 64759 broad.mit.edu 36 7 47309386 47309386 + Silent SNP T T A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 47309386 47309386 TNS3 7 T T A 59 PCLO 27445 broad.mit.edu 36 7 82382277 82382277 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82382277 82382277 PCLO 7 C C T 26 ABCB8 11194 broad.mit.edu 36 7 150361864 150361864 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 150361864 150361864 ABCB8 7 G G A 43 LONRF1 91694 broad.mit.edu 36 8 12638854 12638854 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 12638854 12638854 LONRF1 8 T T G 64 DOCK5 80005 broad.mit.edu 36 8 25254382 25254382 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 G T G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 25254382 25254382 DOCK5 8 G G T 46 COL15A1 1306 broad.mit.edu 36 9 100787677 100787677 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 100787677 100787677 COL15A1 9 C C T 30 FAM166A 401565 broad.mit.edu 36 9 139259684 139259684 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139259684 139259684 FAM166A 9 G G C 43 FAM47C 442444 broad.mit.edu 36 X 36938862 36938862 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36938862 36938862 FAM47C 23 G G A 39 KDM5C 8242 broad.mit.edu 36 X 53242839 53242839 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 53242839 53242839 KDM5C 23 C C T 22 FGD1 2245 broad.mit.edu 36 X 54490597 54490597 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54490597 54490597 FGD1 23 C C A 26 FAAH2 158584 broad.mit.edu 36 X 57374785 57374785 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 57374785 57374785 FAAH2 23 C C T 23 ZDHHC15 158866 broad.mit.edu 36 X 74659467 74659467 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74659467 74659467 ZDHHC15 23 C C T 19 SYTL4 94121 broad.mit.edu 36 X 99827665 99827665 + Missense_Mutation SNP T T A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 99827665 99827665 SYTL4 23 T T A 51 ACTRT1 139741 broad.mit.edu 36 X 127013176 127013176 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127013176 127013176 ACTRT1 23 G G A 40 MIB1 57534 broad.mit.edu 36 18 17607581 17607587 + Splice_Site_Del DEL AGGTAAC - AGGTAAC novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 17607581 17607587 MIB1 18 AGGTAAC - AGGTAAC 15 NEB 4703 broad.mit.edu 36 2 152274462 152274463 + Frame_Shift_Ins INS - T - novel Unknown TCGA-04-1331-01 TCGA-04-1331-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 152274462 152274463 NEB 2 - T - 48