Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
LOC388692	388692	broad.mit.edu	37	1	149287128	149287129	+	RNA	DEL	CT	-	-	rs140343451		TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chr1:149287128_149287129delCT	uc010pbf.1	+	1		c.7653_7654delCT			LOC388692_uc001esg.3_5'Flank	NR_027002				Homo sapiens cDNA FLJ13580 fis, clone PLACE1008851.												0						GGGGACTGGCCTCTCTGCACGG	0.594													3	5	---	---	---	---	
CAPN8	388743	broad.mit.edu	37	1	223807956	223807956	+	Frame_Shift_Del	DEL	C	-	-			TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chr1:223807956delC	uc009xee.2	-	8	1000	c.912delG	c.(910-912)TGGfs	p.W304fs		NM_001143962	NP_001137434	A6NHC0	CAN8_HUMAN	calpain 8	304	Calpain catalytic.				proteolysis	Golgi apparatus	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity				0						CTATGTGATTCCACTCTGGTG	0.517													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	2	75157617	75157618	+	RNA	INS	-	CCTC	CCTC	rs140131198	by1000genomes	TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chr2:75157617_75157618insCCTC	uc002sne.1	+	1		c.2252_2253insCCTC								Homo sapiens cDNA FLJ43972 fis, clone TESTI4017961.																		ttttgggtgataatcaggcgca	0.000													5	3	---	---	---	---	
GNB2	2783	broad.mit.edu	37	7	100274423	100274424	+	Splice_Site	DEL	GT	-	-			TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chr7:100274423_100274424delGT	uc003uwb.2	+	4	476	c.203_splice	c.e4+1	p.R68_splice	GNB2_uc003uwc.2_Splice_Site_p.R24_splice|GNB2_uc010lhd.2_Splice_Site_p.R24_splice|GNB2_uc010lhe.2_Splice_Site_p.R24_splice|GNB2_uc003uwd.2_Intron|GNB2_uc010lhf.2_Intron|GNB2_uc003uwe.2_Splice_Site_p.R68_splice|GNB2_uc003uwf.2_5'Flank	NM_005273	NP_005264	P62879	GBB2_HUMAN	guanine nucleotide-binding protein, beta-2						cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|synaptic transmission	perinuclear region of cytoplasm|plasma membrane	GTPase activity|GTPase binding|signal transducer activity			ovary(2)	2	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)	Ovarian(593;0.238)				CCGACTCAAGGTGTGTGTGTGT	0.634													4	2	---	---	---	---	
Unknown	0	broad.mit.edu	37	9	66469204	66469204	+	RNA	DEL	G	-	-	rs1047837	by1000genomes	TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chr9:66469204delG	uc004aec.2	+	5		c.2771delG								Homo sapiens, clone IMAGE:5213378, mRNA.																		CAATATAATTGCCTTCTTGTA	0.313													4	3	---	---	---	---	
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-46-3766-01A-01D-0983-08	TCGA-46-3766-10A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	0a691892-2209-4f3c-ab16-c2560e4928b4	87da4353-e866-419c-845d-2196ab63f124	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			5	3	---	---	---	---