Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PIKFYVE	200576	broad.mit.edu	37	2	209195289	209195289	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:209195289G>T	ENST00000264380.4	+	23	3992	c.3834G>T	c.(3832-3834)atG>atT	p.M1278I		NM_015040.3	NP_055855.2	Q9Y2I7	FYV1_HUMAN	phosphoinositide kinase, FYVE finger containing	1278					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			NS(1)|autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(14)|kidney(6)|large_intestine(25)|lung(40)|ovary(7)|pancreas(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	107						ATACCCCCATGGTACATCATA	0.433000													20	399					1.64293e-13	2.4644e-13	0.083992	1	0
GPR133	283383	broad.mit.edu	37	12	131590330	131590330	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:131590330C>T	ENST00000261654.5	+	17	2366	c.1807C>T	c.(1807-1809)Cac>Tac	p.H603Y	GPR133_ENST00000543617.1_Missense_Mutation_p.H122Y|GPR133_ENST00000376682.4_Missense_Mutation_p.H289Y|GPR133_ENST00000535015.1_Missense_Mutation_p.H635Y	NM_198827.3	NP_942122.2	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133	603					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(2)|endometrium(6)|kidney(1)|large_intestine(12)|lung(20)|ovary(3)|pancreas(6)|prostate(6)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(4)	67	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CCAGCGCTACCACATCCACGC	0.687000													3	19					0	0	0.029380	0	0
PPP1R8	5511	broad.mit.edu	37	1	28176643	28176643	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:28176643G>A	ENST00000373931.4	+	7	1111	c.316G>A	c.(316-318)Gaa>Aaa	p.E106K	PPP1R8_ENST00000311772.5_Missense_Mutation_p.E248K|PPP1R8_ENST00000236412.7_Missense_Mutation_p.E24K|PPP1R8_ENST00000486634.1_3'UTR	NM_138558.2	NP_612568.1	Q12972	PP1R8_HUMAN	protein phosphatase 1, regulatory subunit 8	248	Interaction with CDC5L, SF3B1 and MELK.				mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|RNA splicing|transcription, DNA-dependent	cytoplasm|nuclear speck|spliceosomal complex	DNA binding|endonuclease activity|protein binding|protein serine/threonine phosphatase inhibitor activity|ribonuclease E activity|RNA binding			breast(2)|cervix(1)|endometrium(2)|lung(2)|upper_aerodigestive_tract(1)	8		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;2.76e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00248)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCCTGGAGGAATCAGGGAG	0.607000													8	134					0	0	0.058154	0	0
CLMN	79789	broad.mit.edu	37	14	95669555	95669555	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:95669555T>G	ENST00000298912.4	-	9	2244	c.2131A>C	c.(2131-2133)Aag>Cag	p.K711Q		NM_024734.3	NP_079010.2	Q96JQ2	CLMN_HUMAN	calmin (calponin-like, transmembrane)	711						integral to membrane	actin binding			central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(10)|lung(17)|prostate(3)|skin(3)	44				Epithelial(152;0.193)		GGGGAGGGCTTGAAATCCAGG	0.557000													3	77					0	0	0.004672	0	0
ZNF426	79088	broad.mit.edu	37	19	9639593	9639593	+	Silent	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr19:9639593G>A	ENST00000593003.1	-	6	1491	c.1014C>T	c.(1012-1014)tcC>tcT	p.S338S	ZNF426_ENST00000535489.1_Silent_p.S376S|ZNF426_ENST00000253115.2_Silent_p.S376S			Q9BUY5	ZN426_HUMAN	zinc finger protein 426	376					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(7)|lung(3)|ovary(1)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)	20						TAAGGCGTGAGGATGTAAGGA	0.438000													3	70					0	0	0.009096	0	0
MAGEC3	139081	broad.mit.edu	37	X	140984614	140984614	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:140984614C>A	ENST00000544766.1	+	5	703	c.176C>A	c.(175-177)tCa>tAa	p.S59*	MAGEC3_ENST00000298296.1_Intron|MAGEC3_ENST00000536088.1_Nonsense_Mutation_p.S59*|MAGEC3_ENST00000483584.1_3'UTR|MAGEC3_ENST00000443323.2_Intron|MAGEC3_ENST00000409007.1_Nonsense_Mutation_p.S59*	NM_177456.2	NP_803251.1	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3	588										NS(2)|breast(3)|central_nervous_system(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(6)|liver(1)|lung(32)|ovary(1)|prostate(1)|skin(5)|stomach(1)|urinary_tract(2)	69	Acute lymphoblastic leukemia(192;6.56e-05)					tccttgtcctcatcctcACCC	0.522000													3	23					0.00909568	0.0100416	0.009096	1	0
DCAF4L2	138009	broad.mit.edu	37	8	88885169	88885169	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:88885169C>A	ENST00000319675.3	-	1	1127	c.1031G>T	c.(1030-1032)cGt>cTt	p.R344L		NM_152418.3	NP_689631.1	Q8NA75	DC4L2_HUMAN	DDB1 and CUL4 associated factor 4-like 2	344										breast(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(19)|liver(2)|lung(40)|ovary(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	83						GTGGCCATGACGGAGGCTCCA	0.602000													5	25					5.9392e-07	7.95737e-07	0.021553	1	0
ATRX	546	broad.mit.edu	37	X	76938364	76938364	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:76938364C>T	ENST00000373344.5	-	9	2598	c.2384G>A	c.(2383-2385)gGc>gAc	p.G795D	ATRX_ENST00000395603.3_Missense_Mutation_p.G757D|ATRX_ENST00000480283.1_5'UTR	NM_000489.3	NP_000480.2	P46100	ATRX_HUMAN	alpha thalassemia/mental retardation syndrome X-linked	795					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding	p.?(1)		bone(1)|breast(6)|central_nervous_system(31)|cervix(2)|endometrium(7)|haematopoietic_and_lymphoid_tissue(15)|kidney(14)|large_intestine(1)|liver(1)|lung(40)|ovary(2)|pancreas(13)|prostate(5)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(2)	145					Phosphatidylserine(DB00144)	AGCTGATTTGCCCTTTTTAGT	0.343000			"""Mis, F, N"""		"""Pancreatic neuroendocrine tumors, paediatric GBM"""		ATR-X (alpha thalassemia/mental retardation) syndrome						4	123					0	0	0.014758	0	0
OR5M9	390162	broad.mit.edu	37	11	56230509	56230509	+	Silent	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:56230509G>T	ENST00000279791.1	-	1	368	c.369C>A	c.(367-369)gcC>gcA	p.A123A		NM_001004743.1	NP_001004743.1	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M, member 9	123					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(17)|ovary(1)|prostate(1)|skin(4)|urinary_tract(2)	36	Esophageal squamous(21;0.00448)					GGTTGCAGCCGGCCATGTACC	0.483000													6	106					1.06961e-07	1.49098e-07	0.038147	1	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011808	46011808	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:46011808G>T	ENST00000400368.1	-	1	578	c.558C>A	c.(556-558)tgC>tgA	p.C186*	TSPEAR_ENST00000323084.4_Intron	NM_198688.2	NP_941961.2	P60371	KR106_HUMAN	keratin associated protein 10-6	186	29 X 5 AA repeats of C-C-X(3).					keratin filament				endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(3)|lung(6)|prostate(3)|skin(1)|stomach(1)|urinary_tract(1)	23						CCGCCTGGCAGCAGGGGCTGG	0.637000													14	202					2.35188e-11	3.48989e-11	0.038395	1	0
LRRIQ3	127255	broad.mit.edu	37	1	74507046	74507046	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:74507046A>T	ENST00000354431.4	-	7	1760	c.1569T>A	c.(1567-1569)aaT>aaA	p.N523K	LRRIQ3_ENST00000395089.1_Missense_Mutation_p.N523K	NM_001105659.1	NP_001099129.1	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	523										NS(2)|breast(1)|central_nervous_system(2)|endometrium(7)|kidney(5)|large_intestine(13)|liver(1)|lung(27)|ovary(3)|prostate(1)|skin(5)|soft_tissue(1)|upper_aerodigestive_tract(5)	73						GAGTGCGCTCATTATTTAAGT	0.358000													5	226					0	0	0.029380	0	0
DDI1	414301	broad.mit.edu	37	11	103908104	103908104	+	Missense_Mutation	SNP	A	A	G	rs140364909		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:103908104A>G	ENST00000302259.3	+	1	797	c.554A>G	c.(553-555)gAg>gGg	p.E185G	PDGFD_ENST00000302251.5_Intron|PDGFD_ENST00000393158.2_Intron	NM_001001711.2	NP_001001711.1	Q8WTU0	DDI1_HUMAN	DNA-damage inducible 1 homolog 1 (S. cerevisiae)	185					proteolysis		aspartic-type endopeptidase activity			central_nervous_system(1)|endometrium(4)|kidney(4)|large_intestine(12)|liver(2)|lung(21)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	52		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GTGCTGATGGAGCAGCAAAGG	0.562000													5	73					0	0	0.029380	0	0
CBX5	23468	broad.mit.edu	37	12	54635557	54635557	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:54635557T>A	ENST00000209875.4	-	5	694	c.558A>T	c.(556-558)aaA>aaT	p.K186N	CBX5_ENST00000550411.1_Missense_Mutation_p.K186N|CBX5_ENST00000439541.2_Missense_Mutation_p.K186N	NM_012117.2	NP_036249.1	P45973	CBX5_HUMAN	chromobox homolog 5	186					blood coagulation|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|nuclear centromeric heterochromatin|nuclear envelope|nucleolus|transcriptional repressor complex	methylated histone residue binding|protein binding, bridging|repressing transcription factor binding			endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|prostate(1)|skin(2)	8						TTGCTGTTTCTTTCTCTTTGT	0.423000													6	140					0	0	0.029380	0	0
CBX5	23468	broad.mit.edu	37	12	54635558	54635558	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:54635558T>A	ENST00000209875.4	-	5	693	c.557A>T	c.(556-558)aAa>aTa	p.K186I	CBX5_ENST00000550411.1_Missense_Mutation_p.K186I|CBX5_ENST00000439541.2_Missense_Mutation_p.K186I	NM_012117.2	NP_036249.1	P45973	CBX5_HUMAN	chromobox homolog 5	186					blood coagulation|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|nuclear centromeric heterochromatin|nuclear envelope|nucleolus|transcriptional repressor complex	methylated histone residue binding|protein binding, bridging|repressing transcription factor binding			endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|prostate(1)|skin(2)	8						TGCTGTTTCTTTCTCTTTGTT	0.423000													6	141					0	0	0.029380	0	0
SLC39A12	221074	broad.mit.edu	37	10	18270285	18270285	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:18270285G>T	ENST00000377369.2	+	6	1242	c.969G>T	c.(967-969)aaG>aaT	p.K323N	SLC39A12_ENST00000539911.1_Missense_Mutation_p.K189N|SLC39A12_ENST00000377374.4_Missense_Mutation_p.K323N|SLC39A12_ENST00000377371.3_Missense_Mutation_p.K323N	NM_001145195.1	NP_001138667.1	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter), member 12	323					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity	p.K323N(1)		NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|kidney(3)|large_intestine(5)|lung(38)|ovary(3)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	60						TTCTACAGAAGGGCCTCTCAC	0.453000													6	58					0.0293803	0.0309503	0.029380	1	0
NPAP1	23742	broad.mit.edu	37	15	24923774	24923774	+	Silent	SNP	A	A	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:24923774A>C	ENST00000329468.2	+	1	3234	c.2760A>C	c.(2758-2760)gcA>gcC	p.A920A		NM_018958.2	NP_061831.2			nuclear pore associated protein 1																		GGAATCCAGCAACCCCAGCAC	0.478000													4	64					0	0	0.014758	0	0
LOC645752	645752	broad.mit.edu	37	15	78213945	78213945	+	RNA	SNP	T	T	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:78213945T>C	ENST00000565869.1	+	0	111				RP11-114H24.2_ENST00000567226.1_RNA																							CCTTTTCCAATGTGAGGATGT	0.478000													5	39					0	0	0.038147	0	0
IGKV1D-12	28903	broad.mit.edu	37	2	90198975	90198975	+	RNA	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:90198975C>A	ENST00000390276.2	+	0	317																											CATCACTTGTCGGGCGAGTCA	0.498000													15	258					1.33834e-09	1.92386e-09	0.043863	1	0
SLC6A11	6538	broad.mit.edu	37	3	10967754	10967754	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:10967754G>T	ENST00000254488.2	+	9	1251	c.1185G>T	c.(1183-1185)tgG>tgT	p.W395C		NM_014229.1	NP_055044.1	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter transporter), member 11	395					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			breast(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(13)|lung(13)|ovary(1)|skin(4)	35				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CCCCGCTGTGGGCCACCTTGT	0.647000													39	513					1.68508e-10	2.47385e-10	0.111260	1	0
UBE2E3	10477	broad.mit.edu	37	2	181927579	181927579	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:181927579G>T	ENST00000410062.4	+	6	981	c.588G>T	c.(586-588)agG>agT	p.R196S	UBE2E3_ENST00000392415.2_Missense_Mutation_p.R196S|UBE2E3_ENST00000602837.1_3'UTR|UBE2E3_ENST00000602710.1_Missense_Mutation_p.R196S|UBE2E3_ENST00000602959.1_Missense_Mutation_p.R196S	NM_006357.2	NP_006348.1	Q969T4	UB2E3_HUMAN	ubiquitin-conjugating enzyme E2E 3	196					protein K11-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|regulation of growth	cytoplasm|nucleolus	ATP binding|protein binding|ubiquitin-protein ligase activity			breast(2)|endometrium(3)|lung(4)|ovary(1)|skin(1)	11						AACACGACAGGATAGCCAGAC	0.433000													6	102					2.7689e-08	3.89906e-08	0.029380	1	0
BBS2	583	broad.mit.edu	37	16	56544822	56544822	+	Silent	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:56544822G>A	ENST00000245157.5	-	4	903	c.483C>T	c.(481-483)gaC>gaT	p.D161D	BBS2_ENST00000561951.1_5'UTR|BBS2_ENST00000568104.1_Silent_p.D161D	NM_031885.3	NP_114091.3	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2	161					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			breast(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(10)|ovary(1)|skin(3)	26						AATTAACATTGTCTCCAGTAA	0.393000									Bardet-Biedl syndrome				8	86					0	0	0.047766	0	0
XIRP2	129446	broad.mit.edu	37	2	168108168	168108168	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:168108168G>T	ENST00000409195.1	+	9	10355	c.10266G>T	c.(10264-10266)atG>atT	p.M3422I	XIRP2_ENST00000295237.9_Missense_Mutation_p.M3422I|XIRP2_ENST00000420519.1_Intron|XIRP2_ENST00000409728.1_Intron|XIRP2_ENST00000409756.2_Intron|XIRP2_ENST00000409605.1_Intron|XIRP2_ENST00000409273.1_Missense_Mutation_p.M3200I|XIRP2_ENST00000409043.1_Intron	NM_152381.5	NP_689594.4	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2	3247					actin cytoskeleton organization	cell junction	actin binding			NS(3)|biliary_tract(2)|breast(5)|cervix(3)|endometrium(16)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(51)|lung(160)|ovary(7)|pancreas(3)|prostate(11)|skin(14)|stomach(5)|upper_aerodigestive_tract(8)|urinary_tract(7)	315						TCTCAGGCATGGATGCATTTG	0.448000													7	145					0.0293803	0.0309503	0.029380	1	0
MIR4485	100616263	broad.mit.edu	37	MT	2345	2345	+	RNA	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrM:2345G>A	ENST00000387347.2	+	0	675					NR_039705.1																						GCATAAGCCTGCGTCAGATCA	0.403000													173	344					0	0	0.048971	0	0
ODF3L1	161753	broad.mit.edu	37	15	76019833	76019833	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:76019833C>G	ENST00000332145.2	+	4	1000	c.777C>G	c.(775-777)atC>atG	p.I259M		NM_175881.3	NP_787077.1	Q8IXM7	OD3L1_HUMAN	outer dense fiber of sperm tails 3-like 1	259										kidney(1)|lung(1)	2						CCATGGGCATCAAGCACTCAC	0.602000													3	38					0	0	0.004672	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119527	38119527	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr22:38119527G>A	ENST00000406386.3	+	7	1219	c.964G>A	c.(964-966)Gcc>Acc	p.A322T	RP1-37E16.12_ENST00000455236.1_RNA	NM_001039141.2	NP_001034230.1	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein	322					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	12	Melanoma(58;0.0574)					CACCCCTAGGGCCTCATCCAC	0.607000													17	180					0	0	0.038395	0	0
GRIK1	2897	broad.mit.edu	37	21	31023467	31023467	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:31023467C>G	ENST00000399914.1	-	6	1446	c.925G>C	c.(925-927)Gag>Cag	p.E309Q	GRIK1_ENST00000399909.1_Missense_Mutation_p.E309Q|GRIK1_ENST00000399913.1_Missense_Mutation_p.E309Q|GRIK1_ENST00000472429.1_5'UTR|GRIK1_ENST00000389124.2_Missense_Mutation_p.E309Q|GRIK1_ENST00000309434.7_Missense_Mutation_p.E309Q|GRIK1_ENST00000327783.4_Missense_Mutation_p.E309Q|GRIK1_ENST00000535441.1_Missense_Mutation_p.E309Q|GRIK1_ENST00000399907.1_Missense_Mutation_p.E309Q|GRIK1_ENST00000389125.3_Missense_Mutation_p.E309Q			P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	309					central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity	p.E309K(2)		NS(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(11)|lung(18)|ovary(1)|prostate(4)|skin(1)|stomach(1)|urinary_tract(1)	45					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AGGCCAGTCTCGGGCCTGGGT	0.463000													3	52					0	0	0.014758	0	0
ALAS1	211	broad.mit.edu	37	3	52246273	52246273	+	Splice_Site	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:52246273G>A	ENST00000394965.2	+	11	1959		c.e11-1		ALAS1_ENST00000469224.1_Splice_Site|ALAS1_ENST00000484952.1_Splice_Site|ALAS1_ENST00000310271.2_Splice_Site	NM_000688.5	NP_000679.1	P13196	HEM1_HUMAN	aminolevulinate, delta-, synthase 1						heme biosynthetic process	mitochondrial matrix	5-aminolevulinate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			endometrium(3)|kidney(3)|large_intestine(7)|liver(2)|lung(5)|ovary(2)|upper_aerodigestive_tract(1)	23				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.000583)|KIRC - Kidney renal clear cell carcinoma(197;0.000751)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	ATTGAACTTAGGTTGCAGATG	0.488000													10	384					0	0	0.058154	0	0
OR14C36	127066	broad.mit.edu	37	1	248512229	248512229	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:248512229C>A	ENST00000317861.1	+	1	153	c.153C>A	c.(151-153)agC>agA	p.S51R		NM_001001918.1	NP_001001918.1	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C, member 36	51					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|endometrium(2)|large_intestine(4)|liver(2)|lung(20)|ovary(2)|prostate(3)|skin(7)|upper_aerodigestive_tract(2)	43						CCTGTGACAGCAGCCTTCACA	0.438000													6	237					3.59834e-05	4.55569e-05	0.021553	1	0
WDR75	84128	broad.mit.edu	37	2	190339976	190339976	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:190339976G>A	ENST00000314761.4	+	21	2386	c.2326G>A	c.(2326-2328)Gaa>Aaa	p.E776K		NM_032168.1	NP_115544.1	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	776						nucleolus				breast(1)|cervix(2)|endometrium(2)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|prostate(1)	25			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			TATGGAAGAAGAAAAAGAAAG	0.294000													4	61					0	0	0.009096	0	0
VPS41	27072	broad.mit.edu	37	7	38816338	38816338	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:38816338C>A	ENST00000310301.4	-	11	877	c.823G>T	c.(823-825)Gca>Tca	p.A275S	VPS41_ENST00000395969.2_Missense_Mutation_p.A250S|VPS41_ENST00000466017.1_5'UTR	NM_014396.3	NP_055211.2	P49754	VPS41_HUMAN	vacuolar protein sorting 41 homolog (S. cerevisiae)	275					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			NS(1)|breast(1)|central_nervous_system(2)|endometrium(5)|kidney(4)|large_intestine(5)|lung(17)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(4)	44						CAGAGAGGTGCAAGTCCACTG	0.428000													6	75					3.59834e-05	4.55569e-05	0.021553	1	0
ZNF563	147837	broad.mit.edu	37	19	12429722	12429722	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr19:12429722T>C	ENST00000293725.5	-	4	1322	c.1117A>G	c.(1117-1119)Acg>Gcg	p.T373A		NM_145276.2	NP_660319.1	Q8TA94	ZN563_HUMAN	zinc finger protein 563	373					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|endometrium(4)|kidney(2)|large_intestine(5)|lung(4)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	20						TGAGATAACGTTTTCCCACAC	0.413000													4	147					0	0	0.014758	0	0
NUDT3	11165	broad.mit.edu	37	6	34261308	34261308	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:34261308T>A	ENST00000607016.1	-	4	571	c.260A>T	c.(259-261)cAg>cTg	p.Q87L	RP1-187N21.4_ENST00000605528.1_Missense_Mutation_p.Q206L	NM_006703.3	NP_006694.1			nudix (nucleoside diphosphate linked moiety X)-type motif 3											lung(2)	2						CTTCCTCTCCTGGTTCTGAAG	0.438000													6	72					0	0	0.021553	0	0
PABPC3	5042	broad.mit.edu	37	13	25671011	25671011	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:25671011T>A	ENST00000281589.3	+	1	712	c.675T>A	c.(673-675)gaT>gaA	p.D225E		NM_030979.2	NP_112241.2	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	225	RRM 3.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			breast(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(10)|lung(21)|ovary(4)|pancreas(1)|skin(3)	47		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TAATGACCGATGAAAGTGGAA	0.413000													9	76					0	0	0.047766	0	0
CSMD3	114788	broad.mit.edu	37	8	113243797	113243797	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:113243797C>G	ENST00000297405.5	-	69	11049	c.10805G>C	c.(10804-10806)gGa>gCa	p.G3602A	CSMD3_ENST00000352409.3_Missense_Mutation_p.G3532A|CSMD3_ENST00000343508.3_Missense_Mutation_p.G3562A|CSMD3_ENST00000455883.2_Missense_Mutation_p.G3433A	NM_198123.1	NP_937756.1	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3	3602						integral to membrane|plasma membrane				breast(7)|central_nervous_system(6)|endometrium(44)|haematopoietic_and_lymphoid_tissue(8)|kidney(36)|large_intestine(72)|liver(5)|lung(389)|ovary(24)|prostate(6)|skin(23)|upper_aerodigestive_tract(19)|urinary_tract(7)	646						GCCAAATTGTCCATAATCTTT	0.328000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	226					0	0	0.021553	0	0
VWA3B	200403	broad.mit.edu	37	2	98744812	98744812	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:98744812C>A	ENST00000477737.1	+	6	1017	c.813C>A	c.(811-813)aaC>aaA	p.N271K	VWA3B_ENST00000451075.2_Missense_Mutation_p.N121K|VWA3B_ENST00000435344.1_Missense_Mutation_p.N271K	NM_144992.4	NP_659429.4	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	271										NS(3)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(10)|lung(33)|ovary(3)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	70						TGTCCTTCAACGCCAGAGGAG	0.512000													7	185					5.18039e-06	6.80851e-06	0.038147	1	0
LINC01410	103352539	broad.mit.edu	37	9	66465977	66465977	+	RNA	SNP	G	G	T	rs4406532		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:66465977G>T	ENST00000424345.1	+	0	610																											TTGTATCCAGGTTCCAAGTTT	0.318000													3	19					6.4e-05	7.95676e-05	0.004672	1	0
LINC00854	100874261	broad.mit.edu	37	17	41381938	41381938	+	RNA	SNP	C	C	G	rs4986161		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:41381938C>G	ENST00000433702.2	-	0	14					NR_047479.1																						aagagctgatcttatgcaggg	0.552000													3	35					0	0	0.004672	0	0
PCDH12	51294	broad.mit.edu	37	5	141325368	141325368	+	Silent	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:141325368G>A	ENST00000231484.3	-	4	4343	c.3133C>T	c.(3133-3135)Ctg>Ttg	p.L1045L		NM_016580.2	NP_057664.1	Q9NPG4	PCD12_HUMAN	protocadherin 12	1045					neuron recognition	integral to plasma membrane	calcium ion binding			breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(13)|lung(14)|ovary(3)|prostate(2)|skin(1)	38		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCAGGGCCAGACCTGTGGGG	0.667000													3	22					0	0	0.004672	0	0
ABCE1	6059	broad.mit.edu	37	4	146031567	146031567	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:146031567A>G	ENST00000296577.4	+	7	1099	c.584A>G	c.(583-585)aAg>aGg	p.K195R	ABCE1_ENST00000502803.1_Intron	NM_001040876.1|NM_002940.2	NP_001035809.1|NP_002931.2	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E (OABP), member 1	195	ABC transporter 1.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|lung(5)|prostate(2)|skin(3)	18	all_hematologic(180;0.151)					GATGAAACAAAGACACAGGCA	0.328000													7	96					0	0	0.029380	0	0
KCNA4	3739	broad.mit.edu	37	11	30033017	30033017	+	Silent	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:30033017G>T	ENST00000328224.6	-	2	2442	c.1209C>A	c.(1207-1209)atC>atA	p.I403I		NM_002233.3	NP_002224.1	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 4	403						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(17)|lung(39)|ovary(3)|pancreas(1)|prostate(1)|skin(4)|upper_aerodigestive_tract(4)|urinary_tract(1)	78						TGATGTTCATGATGTTTTTGA	0.483000													6	141					8.12818e-05	0.000100151	0.029380	1	0
DNAJB14	79982	broad.mit.edu	37	4	100822261	100822261	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:100822261C>T	ENST00000442697.2	-	8	1218	c.1064G>A	c.(1063-1065)cGa>cAa	p.R355Q		NM_001031723.2|NM_001278310.1	NP_001026893.1|NP_001265239.1	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14	355					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			kidney(1)|large_intestine(2)|lung(1)|upper_aerodigestive_tract(1)	5				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		TGCCTTCCTTCGGAGTCGATC	0.348000													5	85					0	0	0.014758	0	0
OR4C46	119749	broad.mit.edu	37	11	51515647	51515647	+	Silent	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:51515647G>T	ENST00000328188.1	+	1	366	c.366G>T	c.(364-366)gtG>gtT	p.V122V		NM_001004703.1	NP_001004703.1	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C, member 46	122					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(5)|large_intestine(5)|lung(31)|ovary(3)|skin(3)|upper_aerodigestive_tract(1)	48						ACCACTATGTGGCCATCTGCA	0.488000													4	107					0.014758	0.0160362	0.014758	1	0
CDH12	1010	broad.mit.edu	37	5	21817099	21817099	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:21817099G>C	ENST00000382254.1	-	9	2043	c.957C>G	c.(955-957)atC>atG	p.I319M	CDH12_ENST00000504376.2_Missense_Mutation_p.I319M|CDH12_ENST00000522262.1_Missense_Mutation_p.I279M|CDH12_ENST00000521384.1_5'UTR	NM_004061.3	NP_004052.2	P55289	CAD12_HUMAN	cadherin 12, type 2 (N-cadherin 2)	319	Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(2)|breast(2)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(19)|lung(75)|ovary(2)|prostate(3)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	120						CATCTGTGACGATGTCAAACA	0.348000										HNSCC(59;0.17)			4	166					0	0	0.021553	0	0
ADAM29	11086	broad.mit.edu	37	4	175897502	175897502	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:175897502A>G	ENST00000359240.3	+	5	1496	c.826A>G	c.(826-828)Aac>Gac	p.N276D	ADAM29_ENST00000404450.4_Missense_Mutation_p.N276D|ADAM29_ENST00000514159.1_Missense_Mutation_p.N276D|ADAM29_ENST00000445694.1_Missense_Mutation_p.N276D	NM_001278125.1|NM_014269.4	NP_001265054.1|NP_055084.3	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29	276	Peptidase M12B.				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			NS(1)|breast(1)|central_nervous_system(3)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(16)|lung(25)|ovary(3)|pancreas(1)|prostate(7)|skin(24)|urinary_tract(2)	93		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GAAGTCGGAGAACATTACGCC	0.423000													12	124					0	0	0.080935	0	0
HIST2H2BE	8349	broad.mit.edu	37	1	149858030	149858030	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:149858030C>T	ENST00000369155.2	-	1	202	c.161G>A	c.(160-162)gGc>gAc	p.G54D		NM_003528.2	NP_003519.1	Q16778	H2B2E_HUMAN	histone cluster 2, H2be	54					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding	p.G54D(2)		breast(1)|haematopoietic_and_lymphoid_tissue(1)|lung(9)|ovary(2)|upper_aerodigestive_tract(1)	14	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			GGACGAGATGCCGGTGTCGGG	0.587000													6	263					0	0	0.021553	0	0
FAM104B	90736	broad.mit.edu	37	X	55172572	55172572	+	Missense_Mutation	SNP	G	G	A	rs111573608		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:55172572G>A	ENST00000425133.2	-	3	334	c.296C>T	c.(295-297)aCc>aTc	p.T99I	FAM104B_ENST00000477847.2_Missense_Mutation_p.T95I|FAM104B_ENST00000332132.4_Intron|FAM104B_ENST00000358460.4_Intron|FAM104B_ENST00000472571.2_3'UTR|FAM104B_ENST00000489298.1_Missense_Mutation_p.T97I	NM_001166700.1|NM_001166701.1|NM_001166704.1	NP_001160172.1|NP_001160173.1|NP_001160176.1	Q5XKR9	F104B_HUMAN	family with sequence similarity 104, member B	0										endometrium(3)|large_intestine(2)|lung(2)|upper_aerodigestive_tract(1)	8						CTCCTTCAAGGTCTGGTTGAT	0.448000													4	60					0	0	0.080935	0	0
PRKG2	5593	broad.mit.edu	37	4	82074851	82074851	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:82074851T>C	ENST00000395578.1	-	7	1053	c.937A>G	c.(937-939)Atc>Gtc	p.I313V	PRKG2_ENST00000509169.1_5'UTR|PRKG2_ENST00000264399.1_Missense_Mutation_p.I313V|PRKG2_ENST00000418486.2_Missense_Mutation_p.I313V|PRKG2_ENST00000545647.1_5'UTR			Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	313					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			NS(1)|breast(4)|central_nervous_system(2)|endometrium(3)|kidney(3)|large_intestine(7)|lung(14)|ovary(1)|skin(2)	37						TCTCTAATGATGTAATCTCCT	0.358000													4	29					0	0	0.014758	0	0
MIR4485	100616263	broad.mit.edu	37	MT	2826	2826	+	RNA	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrM:2826G>A	ENST00000387347.2	+	0	1156					NR_039705.1																						GGGGCGACCTCGGAGCAGAAC	0.433000													141	350					0	0	0.048971	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	T	C	rs60558629		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:12887612T>C	ENST00000535591.1	-	3	440	c.245A>G	c.(244-246)cAt>cGt	p.H82R		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	82								p.H82R(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						GAAGCACCCATGGGCCATAGC	0.488000													4	204					0	0	0.038147	0	0
RTN1	6252	broad.mit.edu	37	14	60213133	60213133	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:60213133G>C	ENST00000267484.5	-	2	643	c.308C>G	c.(307-309)tCg>tGg	p.S103W		NM_021136.2	NP_066959.1	Q16799	RTN1_HUMAN	reticulon 1	103					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity	p.S103W(1)		central_nervous_system(2)|kidney(2)|large_intestine(9)|lung(30)|ovary(2)|prostate(1)|skin(2)|urinary_tract(1)	49				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		TGTGTAACACGATCCTTCCCC	0.458000													6	127					0	0	0.021553	0	0
C1orf101	257044	broad.mit.edu	37	1	244662310	244662310	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:244662310A>T	ENST00000366534.4	+	7	412	c.358A>T	c.(358-360)Act>Tct	p.T120S	C1orf101_ENST00000366533.4_Missense_Mutation_p.T120S|C1orf101_ENST00000366531.3_Intron|C1orf101_ENST00000473875.1_Intron	NM_001130957.1	NP_001124429.1	Q5SY80	CA101_HUMAN	chromosome 1 open reading frame 101	120						integral to membrane				NS(1)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(8)|ovary(1)|prostate(2)|skin(2)|urinary_tract(3)	36	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			CTAGCTTATCACTGTGTGGGC	0.328000													4	103					0	0	0.009096	0	0
DCX	1641	broad.mit.edu	37	X	110574146	110574146	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:110574146C>A	ENST00000356915.2	-	5	994	c.932G>T	c.(931-933)gGt>gTt	p.G311V	DCX_ENST00000338081.3_Splice_Site|DCX_ENST00000496551.1_5'UTR|DCX_ENST00000371993.2_Splice_Site|DCX_ENST00000488120.1_Splice_Site|DCX_ENST00000356220.3_Missense_Mutation_p.G311V	NM_001195553.1|NM_178152.2|NM_178153.2	NP_001182482.1|NP_835365.1|NP_835366.1	O43602	DCX_HUMAN	doublecortin	391	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding	p.G311V(1)|p.?(1)		breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(10)|lung(17)|skin(6)|upper_aerodigestive_tract(1)	41						TTGGTCGTTACCTGAGTCAGC	0.522000													34	295					7.11191e-15	1.10275e-14	0.054565	1	0
HTR1A	3350	broad.mit.edu	37	5	63256897	63256897	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:63256897C>T	ENST00000323865.3	-	1	883	c.650G>A	c.(649-651)cGc>cAc	p.R217H	RP11-158J3.2_ENST00000502882.1_RNA	NM_000524.3	NP_000515.2	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	217					behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|lung(29)|ovary(2)|pancreas(2)|prostate(2)|stomach(1)|upper_aerodigestive_tract(1)	56		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TCGGAATATGCGCCCATAGAG	0.587000													4	141					0	0	0.009096	0	0
KCND3	3752	broad.mit.edu	37	1	112524699	112524699	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:112524699G>A	ENST00000369697.1	-	1	719	c.650C>T	c.(649-651)cCg>cTg	p.P217L	KCND3_ENST00000302127.4_Missense_Mutation_p.P217L|KCND3_ENST00000315987.2_Missense_Mutation_p.P217L			Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related subfamily, member 3	217						sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			NS(1)|breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(16)|lung(9)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	49		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		CTCCCCGCACGGCAGCTCCTT	0.642000													3	24					0	0	0.004672	0	0
MFAP3L	9848	broad.mit.edu	37	4	170913452	170913452	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:170913452G>T	ENST00000361618.3	-	3	614	c.307C>A	c.(307-309)Caa>Aaa	p.Q103K	MFAP3L_ENST00000393704.3_5'UTR|RP11-6E9.4_ENST00000508955.1_RNA	NM_021647.6	NP_067679.6	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like	103	Ig-like C2-type.					integral to membrane|plasma membrane				cervix(1)|endometrium(4)|kidney(1)|large_intestine(6)|lung(5)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	22		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		TCGTGCATTTGCCATTTTCCT	0.463000													9	63					3.86212e-05	4.8452e-05	0.069234	1	0
ZFHX4	79776	broad.mit.edu	37	8	77765686	77765686	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:77765686T>A	ENST00000521891.2	+	10	6977	c.6529T>A	c.(6529-6531)Ttt>Att	p.F2177I	ZFHX4_ENST00000518282.1_Missense_Mutation_p.F2151I|ZFHX4_ENST00000050961.6_Missense_Mutation_p.F2132I|ZFHX4_ENST00000455469.2_Missense_Mutation_p.F2132I	NM_024721.4	NP_078997.4	Q86UP3	ZFHX4_HUMAN	zinc finger homeobox 4	2132						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAAACACTGGTTTAGAAATAC	0.373000										HNSCC(33;0.089)			11	207					0	0	0.080935	0	0
MAN2A1	4124	broad.mit.edu	37	5	109117165	109117165	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:109117165G>T	ENST00000261483.4	+	9	2495	c.1443G>T	c.(1441-1443)aaG>aaT	p.K481N		NM_002372.2	NP_002363.2	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	481					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			breast(2)|central_nervous_system(2)|endometrium(7)|kidney(2)|large_intestine(13)|lung(20)|ovary(3)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	55		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		AGAGAGACAAGGGCCAATCGA	0.363000													3	43					0.004672	0.0053728	0.004672	1	0
TRBV10-1	28585	broad.mit.edu	37	7	142231699	142231699	+	RNA	SNP	T	T	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:142231699T>C	ENST00000390364.3	-	0	285																											TTTGTTAGTGTCGTGAACACC	0.502000													36	288					0	0	0.080422	0	0
TENM1	10178	broad.mit.edu	37	X	123680734	123680734	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:123680734A>T	ENST00000422452.2	-	15	2704	c.2641T>A	c.(2641-2643)Ttt>Att	p.F881I	TENM1_ENST00000371130.3_Missense_Mutation_p.F881I	NM_001163278.1|NM_001163279.1	NP_001156750.1|NP_001156751.1			teneurin transmembrane protein 1																		CTGCTGTCAAATGACACCTCA	0.378000													9	86					0	0	0.058154	0	0
OR5T2	219464	broad.mit.edu	37	11	56000092	56000092	+	Silent	SNP	A	A	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:56000092A>T	ENST00000313264.4	-	1	645	c.570T>A	c.(568-570)gcT>gcA	p.A190A		NM_001004746.1	NP_001004746.1	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T, member 2	190					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(6)|kidney(1)|large_intestine(5)|lung(22)|ovary(2)|prostate(1)|skin(1)|stomach(3)	41	Esophageal squamous(21;0.00448)					GTAAAATGCCAGCAACATAGG	0.448000													7	159					0	0	0.069234	0	0
OR4N2	390429	broad.mit.edu	37	14	20296125	20296125	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:20296125A>T	ENST00000568211.1	+	1	518	c.518A>T	c.(517-519)cAg>cTg	p.Q173L	OR4N2_ENST00000315947.1_Missense_Mutation_p.Q173L			Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N, member 2	173					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|liver(1)|lung(32)|ovary(2)|prostate(1)|skin(2)|stomach(2)	52	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GGCCCAAACCAGCTGGACAAC	0.527000													7	504					0	0	0.029380	0	0
EPHB1	2047	broad.mit.edu	37	3	134898765	134898765	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:134898765G>A	ENST00000398015.3	+	10	2193	c.1823G>A	c.(1822-1824)cGg>cAg	p.R608Q	EPHB1_ENST00000493838.1_Missense_Mutation_p.R169Q	NM_004441.4	NP_004432.1	P54762	EPHB1_HUMAN	EPH receptor B1	608						integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			NS(1)|breast(3)|central_nervous_system(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(13)|lung(63)|ovary(8)|pancreas(2)|prostate(8)|skin(7)|stomach(4)|upper_aerodigestive_tract(4)|urinary_tract(2)	130						GAAGCTGTCCGGGAGTTTGCC	0.488000													5	216					0	0	0.014758	0	0
DCLK3	85443	broad.mit.edu	37	3	36763132	36763132	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:36763132T>G	ENST00000416516.2	-	3	1961	c.1471A>C	c.(1471-1473)Aaa>Caa	p.K491Q	DCLK3_ENST00000498047.1_5'UTR	NM_033403.1	NP_208382.1	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	491	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			breast(3)|endometrium(3)|kidney(2)|large_intestine(11)|lung(20)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	48						GTAGTAGATTTGTCCTCATTT	0.413000													10	102					0	0	0.069234	0	0
ATP1A2	477	broad.mit.edu	37	1	160105300	160105300	+	Missense_Mutation	SNP	T	T	A	rs28933400		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:160105300T>A	ENST00000361216.3	+	16	2281	c.2192T>A	c.(2191-2193)aTg>aAg	p.M731K	ATP1A2_ENST00000392233.3_Missense_Mutation_p.M731K|ATP1A2_ENST00000472488.1_3'UTR	NM_000702.3	NP_000693.1	P50993	AT1A2_HUMAN	ATPase, Na+/K+ transporting, alpha 2 polypeptide	731			M -> T (in FHM2; dbSNP:rs28933400).		ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			NS(1)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|lung(30)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)	69	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			GGCATTGCCATGGGCATCTCT	0.597000													6	109					0	0	0.029380	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963452	73963452	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:73963452A>G	ENST00000373468.1	-	3	1591	c.940T>C	c.(940-942)Tat>Cat	p.Y314H	KIAA2022_ENST00000055682.5_Missense_Mutation_p.Y314H			Q5QGS0	K2022_HUMAN	KIAA2022	314					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(23)|liver(1)|lung(41)|ovary(7)|pancreas(2)|prostate(4)|skin(9)|upper_aerodigestive_tract(2)|urinary_tract(3)	109						AAGGATTCATATCGAATTTTC	0.418000													6	119					0	0	0.021553	0	0
STAT3	6774	broad.mit.edu	37	17	40475149	40475149	+	Silent	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:40475149G>T	ENST00000264657.5	-	20	2073	c.1761C>A	c.(1759-1761)ggC>ggA	p.G587G	STAT3_ENST00000588969.1_Silent_p.G587G|STAT3_ENST00000585517.1_Silent_p.G587G|STAT3_ENST00000389272.3_Silent_p.G489G|STAT3_ENST00000404395.3_Silent_p.G587G	NM_003150.3|NM_139276.2	NP_003141.2|NP_644805.1	P40763	STAT3_HUMAN	signal transducer and activator of transcription 3 (acute-phase response factor)	587	SH2.				cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(4)|kidney(2)|large_intestine(3)|lung(12)|ovary(1)|prostate(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	35		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TACTGATAAAGCCCATGATGT	0.532000									Hyperimmunoglobulin E Recurrent Infection Syndrome		OREG0024421	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	158					0.0293803	0.0309503	0.029380	1	0
C4orf6	10141	broad.mit.edu	37	4	5527967	5527967	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:5527967C>A	ENST00000195455.2	+	2	366	c.191C>A	c.(190-192)aCa>aAa	p.T64K	C4orf6_ENST00000515342.1_3'UTR	NM_005750.2	NP_005741.1	Q99440	CD006_HUMAN	chromosome 4 open reading frame 6	64					nervous system development					large_intestine(1)|prostate(1)	2						GCAGATAAAACAGAGCCAGAA	0.438000													8	61					1.12685e-05	1.46703e-05	0.047766	1	0
PLK1	5347	broad.mit.edu	37	16	23695356	23695356	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:23695356G>T	ENST00000300093.4	+	5	1093	c.982G>T	c.(982-984)Gct>Tct	p.A328S		NM_005030.3	NP_005021.2	P53350	PLK1_HUMAN	polo-like kinase 1	328					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(10)|lung(7)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	23				GBM - Glioblastoma multiforme(48;0.0156)		GTTTTCGATTGCTCCCAGCAG	0.537000													7	203					3.09899e-07	4.19274e-07	0.047766	1	0
FAM182B	728882	broad.mit.edu	37	20	25848614	25848614	+	Translation_Start_Site	SNP	C	C	A	rs144456407	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:25848614C>A	ENST00000376404.2	-	0	172				FAM182B_ENST00000478164.1_5'UTR																lung(1)	1						ccgggcaggcctgaggctggg	0.667000													3	15					2.56e-06	3.39692e-06	0.009096	1	0
ATP7A	538	broad.mit.edu	37	X	77245190	77245190	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:77245190C>T	ENST00000341514.6	+	4	1227	c.1072C>T	c.(1072-1074)Ccc>Tcc	p.P358S	ATP7A_ENST00000350425.4_Intron|ATP7A_ENST00000343533.5_Missense_Mutation_p.P358S	NM_000052.5	NP_000043.3	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	358	Poly-Ser.				ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity			breast(4)|central_nervous_system(3)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(7)|lung(26)|pancreas(1)|prostate(1)|urinary_tract(1)	53						CTCAAACTCTCCCTCCAGCTC	0.433000													11	109					0	0	0.069234	0	0
NTM	50863	broad.mit.edu	37	11	132180083	132180083	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:132180083G>A	ENST00000374786.1	+	5	1218	c.739G>A	c.(739-741)Gca>Aca	p.A247T	NTM_ENST00000539799.1_Missense_Mutation_p.A247T|NTM_ENST00000474900.1_3'UTR|NTM_ENST00000427481.2_Missense_Mutation_p.A238T|NTM_ENST00000425719.2_Missense_Mutation_p.A247T|NTM_ENST00000374791.3_Missense_Mutation_p.A247T|NTM_ENST00000374784.1_Missense_Mutation_p.A247T	NM_001144058.1|NM_016522.2	NP_001137530.1|NP_057606.1	Q9P121	NTRI_HUMAN	neurotrimin	247	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				breast(2)|central_nervous_system(1)|endometrium(4)|large_intestine(9)|lung(30)|ovary(4)|pancreas(1)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	56						TGAAGCCTCAGCAGTCCCCTC	0.493000													21	242					0	0	0.091800	0	0
FAM47A	158724	broad.mit.edu	37	X	34149595	34149595	+	Silent	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:34149595C>T	ENST00000346193.3	-	1	852	c.801G>A	c.(799-801)ctG>ctA	p.L267L		NM_203408.3	NP_981953.2	Q5JRC9	FA47A_HUMAN	family with sequence similarity 47, member A	267										NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(1)|endometrium(9)|kidney(5)|large_intestine(17)|lung(44)|ovary(5)|prostate(2)|skin(4)|upper_aerodigestive_tract(4)|urinary_tract(2)	97						TCTCAGAATCCAGTTTCAGCA	0.587000													3	28					0	0	0.009096	0	0
MYO5A	4644	broad.mit.edu	37	15	52700338	52700338	+	Splice_Site	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:52700338C>T	ENST00000399231.3	-	7	1000		c.e7-1		MYO5A_ENST00000356338.6_Splice_Site|MYO5A_ENST00000553916.1_Splice_Site|MYO5A_ENST00000358212.6_Splice_Site|MYO5A_ENST00000399233.2_Splice_Site	NM_000259.3	NP_000250.3	Q9Y4I1	MYO5A_HUMAN	myosin VA (heavy chain 12, myoxin)						actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			breast(4)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(7)|large_intestine(12)|lung(19)|ovary(3)|skin(3)|stomach(1)	57				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		CCTCTTCTGCCTTCGAAATAA	0.294000													6	79					0	0	0.021553	0	0
FOXO1	2308	broad.mit.edu	37	13	41134917	41134917	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:41134917C>A	ENST00000379561.5	-	2	1095	c.711G>T	c.(709-711)tgG>tgT	p.W237C	FOXO1_ENST00000473775.1_5'UTR	NM_002015.3	NP_002006.2	Q12778	FOXO1_HUMAN	forkhead box O1	237					anti-apoptosis|blood vessel development|embryo development|endocrine pancreas development|insulin receptor signaling pathway|negative regulation of stress-activated MAPK cascade|nerve growth factor receptor signaling pathway|pattern specification process|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|regulation of cell proliferation|regulation of sequence-specific DNA binding transcription factor activity|response to DNA damage stimulus|tissue development	cytosol|transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding		PAX7/FOXO1(197)|PAX3/FOXO1(749)	central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(7)|kidney(1)|large_intestine(2)|lung(2)|upper_aerodigestive_tract(1)	20		Lung NSC(96;1.18e-05)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;7.32e-09)|Epithelial(112;2.87e-06)|OV - Ovarian serous cystadenocarcinoma(117;6.98e-05)|GBM - Glioblastoma multiforme(144;0.00394)|BRCA - Breast invasive adenocarcinoma(63;0.0815)		GATTGAGCATCCACCAAGAAC	0.453000													12	86					2.27111e-07	3.13413e-07	0.093190	1	0
PIKFYVE	200576	broad.mit.edu	37	2	209195290	209195290	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:209195290G>T	ENST00000264380.4	+	23	3993	c.3835G>T	c.(3835-3837)Gta>Tta	p.V1279L		NM_015040.3	NP_055855.2	Q9Y2I7	FYV1_HUMAN	phosphoinositide kinase, FYVE finger containing	1279					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			NS(1)|autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(14)|kidney(6)|large_intestine(25)|lung(40)|ovary(7)|pancreas(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	107						TACCCCCATGGTACATCATAT	0.438000													18	394					3.5997e-14	5.45888e-14	0.069288	1	0
KCNA6	3742	broad.mit.edu	37	12	4919925	4919925	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:4919925C>T	ENST00000433855.1	+	1	1584	c.718C>T	c.(718-720)Cct>Tct	p.P240S	KCNA6_ENST00000280684.3_Missense_Mutation_p.P240S	NM_002235.3	NP_002226.1	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 6	240						voltage-gated potassium channel complex	voltage-gated potassium channel activity			NS(1)|breast(3)|endometrium(5)|large_intestine(6)|lung(17)|ovary(3)|pancreas(1)|prostate(1)|skin(7)|upper_aerodigestive_tract(5)	49						TGGCATCACCCCTGGGGAAAT	0.547000										HNSCC(72;0.22)			4	89					0	0	0.014758	0	0
BAGE2	85319	broad.mit.edu	37	21	11058330	11058330	+	RNA	SNP	G	G	A	rs138162498		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:11058330G>A	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATCGCTGAAAGGGGTAAAGGA	0.378000													9	227					0	0	0.058154	0	0
SLC6A6	6533	broad.mit.edu	37	3	14489271	14489271	+	Silent	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:14489271C>A	ENST00000454876.2	+	5	875	c.546C>A	c.(544-546)gtC>gtA	p.V182V	SLC6A6_ENST00000360861.3_Silent_p.V182V|SLC6A6_ENST00000416216.2_Silent_p.V182V|SLC6A6_ENST00000484191.1_3'UTR			P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter transporter), member 6	182					cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			NS(1)|breast(2)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(11)|ovary(1)|prostate(1)|skin(2)	28						ACAAGAGTGTCTGGATCACCA	0.562000													6	49					0.0215528	0.0232366	0.021553	1	0
LINC01410	103352539	broad.mit.edu	37	9	66459884	66459884	+	RNA	SNP	T	T	G	rs139166660	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:66459884T>G	ENST00000424345.1	+	0	144																											tagtagatgttcttcagtgtc	0.368000													5	59					0	0	0.014758	0	0
OR2T34	127068	broad.mit.edu	37	1	248737464	248737464	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:248737464G>A	ENST00000328782.2	-	1	616	c.595C>T	c.(595-597)Ctc>Ttc	p.L199F		NM_001001821.1	NP_001001821.1	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T, member 34	199					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|endometrium(1)|large_intestine(6)|lung(28)|ovary(2)|skin(2)|stomach(3)	43	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCTTATAGAGGGAGACGTCA	0.517000													9	961					0	0	0.058154	0	0
PCDH11X	27328	broad.mit.edu	37	X	91134023	91134023	+	Silent	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:91134023C>T	ENST00000373094.1	+	2	3629	c.2784C>T	c.(2782-2784)ttC>ttT	p.F928F	PCDH11X_ENST00000373097.1_Silent_p.F928F|PCDH11X_ENST00000373088.1_Silent_p.F928F|PCDH11X_ENST00000298274.8_Silent_p.F928F|PCDH11X_ENST00000406881.1_Silent_p.F928F|PCDH11X_ENST00000361724.1_Silent_p.F928F|PCDH11X_ENST00000504220.1_Silent_p.F928F|PCDH11X_ENST00000395337.2_Silent_p.F928F|PCDH11X_ENST00000361655.2_Silent_p.F928F	NM_032968.3	NP_116750.1	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked	928					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|biliary_tract(1)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(30)|liver(4)|lung(92)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	159						CTACTACTTTCAAGCCCGACA	0.468000													5	75					0	0	0.021553	0	0
DNAH11	8701	broad.mit.edu	37	7	21723542	21723542	+	Silent	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:21723542G>T	ENST00000328843.6	+	33	5653	c.5622G>T	c.(5620-5622)gtG>gtT	p.V1874V	DNAH11_ENST00000409508.3_Silent_p.V1867V			Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1874	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.V1874V(1)		NS(1)|autonomic_ganglia(1)|breast(13)|central_nervous_system(3)|cervix(4)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(50)|lung(101)|ovary(10)|pancreas(4)|prostate(7)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	230						CTCGACTAGTGATCACTCCTC	0.423000									Kartagener syndrome				7	186					0.000274275	0.000332017	0.047766	1	0
USH2A	7399	broad.mit.edu	37	1	215847453	215847453	+	Silent	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:215847453C>T	ENST00000366943.2	-	63	14186	c.13800G>A	c.(13798-13800)aaG>aaA	p.K4600K	USH2A_ENST00000307340.3_Silent_p.K4600K			O75445	USH2A_HUMAN	Usher syndrome 2A (autosomal recessive, mild)	4600	Fibronectin type-III 31.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			NS(7)|breast(20)|central_nervous_system(3)|cervix(2)|endometrium(32)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(71)|liver(2)|lung(282)|ovary(25)|pancreas(2)|prostate(12)|skin(22)|stomach(7)|upper_aerodigestive_tract(20)|urinary_tract(3)	527				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGTGAAATGGCTTCAGCTGGT	0.393000										HNSCC(13;0.011)			5	162					0	0	0.029380	0	0
LINC01410	103352539	broad.mit.edu	37	9	66459846	66459846	+	RNA	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:66459846G>T	ENST00000424345.1	+	0	106																											acttggtgaggtcatgttttc	0.363000													4	56					0.00116845	0.00136649	0.021553	1	0
OR5D14	219436	broad.mit.edu	37	11	55563896	55563896	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:55563896C>A	ENST00000335605.1	+	1	865	c.865C>A	c.(865-867)Cct>Act	p.P289T		NM_001004735.1	NP_001004735.1	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D, member 14	289					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(30)|ovary(2)|prostate(1)|skin(2)|stomach(3)|urinary_tract(1)	48		all_epithelial(135;0.196)				CATGCTGAACCCTCTGATCTA	0.418000													6	41					0.00198382	0.00230056	0.029380	1	0
OR5H14	403273	broad.mit.edu	37	3	97868848	97868848	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:97868848C>A	ENST00000437310.1	+	1	679	c.619C>A	c.(619-621)Caa>Aaa	p.Q207K		NM_001005514.1	NP_001005514.1	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H, member 14	207					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(3)|lung(17)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	31						AGGTTCAATTCAAGTTTTTAC	0.308000													4	46					0.00909568	0.0100416	0.009096	1	0
RP11-423O2.5	0	broad.mit.edu	37	1	142803646	142803646	+	RNA	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:142803646G>A	ENST00000423385.1	-	0	1319																											gttgtattctgggctagacat	0.299000													3	16					0	0	0.009096	0	0
PXDNL	137902	broad.mit.edu	37	8	52233429	52233429	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:52233429T>A	ENST00000356297.4	-	22	4275	c.4175A>T	c.(4174-4176)cAg>cTg	p.Q1392L	RP11-401H2.1_ENST00000521294.1_RNA|PXDNL_ENST00000543296.1_Silent_p.A1310A	NM_144651.4	NP_653252.3	A1KZ92	PXDNL_HUMAN	peroxidasin homolog (Drosophila)-like	1392					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(6)|lung(25)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	48		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				ACACCCTGCCTGCCTCAGGCG	0.502000													5	163					0	0	0.038147	0	0
MT-CYB	4519	broad.mit.edu	37	MT	14800	14800	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrM:14800C>T	ENST00000361789.2	+	1	54	c.54C>T	c.(52-54)ttC>ttT	p.18_18insF						mitochondrially encoded cytochrome b											breast(6)|endometrium(25)|kidney(33)|prostate(1)	65						AACCACTCATTCATCGACCTC	0.438000													102	298					0	0	0.048971	0	0
LYSMD4	145748	broad.mit.edu	37	15	100271393	100271393	+	Silent	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:100271393C>T	ENST00000344791.2	-	5	542	c.270G>A	c.(268-270)gtG>gtA	p.V90V	LYSMD4_ENST00000545021.1_5'UTR|LYSMD4_ENST00000332728.4_Intron|LYSMD4_ENST00000409796.1_Intron|LYSMD4_ENST00000604213.1_Intron	NM_152449.2	NP_689662.2	Q5XG99	LYSM4_HUMAN	LysM, putative peptidoglycan-binding, domain containing 4	256					cell wall macromolecule catabolic process	integral to membrane				breast(1)|cervix(1)|kidney(2)|large_intestine(2)|lung(3)|stomach(1)	10	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00162)|LUSC - Lung squamous cell carcinoma(107;0.17)|Lung(145;0.208)			CATTGTTAATCACTCTGAATG	0.343000													3	46					0	0	0.009096	0	0
POTEF	728378	broad.mit.edu	37	2	130832776	130832776	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:130832776C>T	ENST00000357462.5	-	15	2362	c.2269G>A	c.(2269-2271)Gag>Aag	p.E757K	POTEF_ENST00000409914.2_Missense_Mutation_p.E757K			A5A3E0	POTEF_HUMAN	POTE ankyrin domain family, member F	757	Actin-like.					cell cortex	ATP binding			breast(1)|cervix(1)|endometrium(6)|kidney(2)|large_intestine(4)|lung(28)|ovary(3)|prostate(3)|skin(4)|upper_aerodigestive_tract(1)	53						CTCTGGGCCTCCTTGCCCACA	0.597000													4	56					0	0	0.029380	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447268	17447268	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:17447268G>T	ENST00000541323.1	+	3	792	c.347G>T	c.(346-348)cGc>cTc	p.R116L	PDGFRL_ENST00000251630.6_Missense_Mutation_p.R116L|PDGFRL_ENST00000398074.3_Missense_Mutation_p.R116L	NM_006207.2	NP_006198.1	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	116	Ig-like C2-type 1.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(5)	9				Colorectal(111;0.0752)		AAGGATTCTCGCCTCAGGTAA	0.413000													5	111					0.000602214	0.000716427	0.014758	1	0
RYR2	6262	broad.mit.edu	37	1	237806708	237806708	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:237806708G>C	ENST00000366574.2	+	48	7620	c.7303G>C	c.(7303-7305)Gtt>Ctt	p.V2435L	RYR2_ENST00000360064.6_Missense_Mutation_p.V2433L|RYR2_ENST00000542537.1_Missense_Mutation_p.V2419L	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	2435	4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			NS(4)|breast(8)|central_nervous_system(11)|cervix(2)|endometrium(39)|haematopoietic_and_lymphoid_tissue(5)|kidney(17)|large_intestine(83)|liver(4)|lung(353)|ovary(18)|pancreas(5)|prostate(12)|skin(8)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(4)	586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTTGGTGGGCGTTATCAGCAT	0.433000													8	129					0	0	0.038147	0	0
TRIM2	23321	broad.mit.edu	37	4	154191516	154191516	+	Silent	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:154191516C>A	ENST00000338700.5	+	2	125	c.60C>A	c.(58-60)ggC>ggA	p.G20G	TRIM2_ENST00000494872.1_3'UTR|TRIM2_ENST00000437508.2_5'UTR	NM_015271.3	NP_056086.2	Q9C040	TRIM2_HUMAN	tripartite motif containing 2	0						cytoplasm	zinc ion binding	p.G20G(7)		breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|prostate(1)	19	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		AGACAGCCGGCCCCCCATGTC	0.488000													7	69					3.09899e-07	4.19274e-07	0.047766	1	0
DCX	1641	broad.mit.edu	37	X	110574147	110574147	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:110574147C>A	ENST00000356915.2	-	5	993	c.931G>T	c.(931-933)Ggt>Tgt	p.G311C	DCX_ENST00000338081.3_Splice_Site_p.A392_splice|DCX_ENST00000496551.1_5'UTR|DCX_ENST00000371993.2_Splice_Site_p.A311_splice|DCX_ENST00000488120.1_Splice_Site_p.A311_splice|DCX_ENST00000356220.3_Missense_Mutation_p.G311C	NM_001195553.1|NM_178152.2|NM_178153.2	NP_001182482.1|NP_835365.1|NP_835366.1	O43602	DCX_HUMAN	doublecortin	391	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding	p.G311S(1)|p.A392T(1)		breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(10)|lung(17)|skin(6)|upper_aerodigestive_tract(1)	41						TGGTCGTTACCTGAGTCAGCT	0.527000													31	299					2.61193e-14	4.00496e-14	0.041601	1	0
LINC01410	103352539	broad.mit.edu	37	9	66458146	66458146	+	RNA	SNP	C	C	T	rs148666006		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:66458146C>T	ENST00000424345.1	+	0	67				RNA5SP283_ENST00000365604.1_RNA																							AAGCCAaaagcctacggtacc	0.627000													3	28					0	0	0.009096	0	0
TSNARE1	203062	broad.mit.edu	37	8	143396366	143396366	+	Nonsense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:143396366T>A	ENST00000519651.1	-	6	515	c.412A>T	c.(412-414)Aag>Tag	p.K138*	TSNARE1_ENST00000520166.1_Nonsense_Mutation_p.K357*|TSNARE1_ENST00000307180.3_Nonsense_Mutation_p.K358*|TSNARE1_ENST00000518928.1_5'UTR|TSNARE1_ENST00000524325.1_Nonsense_Mutation_p.K357*			Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	358					vesicle-mediated transport	integral to membrane				breast(1)|endometrium(3)|kidney(4)|large_intestine(1)|lung(6)|ovary(2)|stomach(2)|urinary_tract(1)	20	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CACCTCACCTTCTGCACCACT	0.637000													4	67					0	0	0.014758	0	0
PSG2	5670	broad.mit.edu	37	19	43585224	43585224	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr19:43585224G>T	ENST00000406487.1	-	2	337	c.239C>A	c.(238-240)aCa>aAa	p.T80K		NM_031246.3	NP_112536.2	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	80	Ig-like V-type.				cell migration|female pregnancy	extracellular region				central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(5)|lung(24)|ovary(1)|pancreas(2)|prostate(6)|stomach(2)|urinary_tract(2)	49		Prostate(69;0.00682)				TACATATGATGTAATGTAATG	0.433000													4	315					0.000602214	0.000716427	0.014758	1	0
SERPINA9	327657	broad.mit.edu	37	14	94936018	94936018	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:94936018G>A	ENST00000337425.5	-	2	288	c.214C>T	c.(214-216)Cgc>Tgc	p.R72C	SERPINA9_ENST00000546329.1_Intron|SERPINA9_ENST00000298845.7_Missense_Mutation_p.R72C|SERPINA9_ENST00000424550.2_Intron|SERPINA9_ENST00000380365.3_Missense_Mutation_p.R54C|SERPINA9_ENST00000448305.2_Intron	NM_175739.3	NP_783866.2	Q86WD7	SPA9_HUMAN	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	54					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|lung(17)	21		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CGGTATAGGCGGAAGGCAAAG	0.602000													4	259					0	0	0.009096	0	0
RNASEL	6041	broad.mit.edu	37	1	182544630	182544630	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:182544630T>A	ENST00000367559.3	-	7	2376	c.2123A>T	c.(2122-2124)cAg>cTg	p.Q708L	RNASEL_ENST00000444138.1_Missense_Mutation_p.Q708L	NM_021133.3	NP_066956.1	Q05823	RN5A_HUMAN	ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	708	KEN.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			NS(1)|breast(1)|endometrium(3)|kidney(3)|large_intestine(3)|lung(9)|ovary(4)|prostate(1)|stomach(1)|urinary_tract(1)	27						TTCTGTGTTCTGTAGTTTTGT	0.448000													3	59					0	0	0.009096	0	0
ZNF92	168374	broad.mit.edu	37	7	64864055	64864055	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:64864055G>T	ENST00000328747.7	+	4	1227	c.1028G>T	c.(1027-1029)tGt>tTt	p.C343F	ZNF92_ENST00000450302.2_Missense_Mutation_p.C274F|ZNF92_ENST00000357512.2_Missense_Mutation_p.C311F|ZNF92_ENST00000431504.1_Missense_Mutation_p.C267F	NM_152626.2	NP_689839.1	Q03936	ZNF92_HUMAN	zinc finger protein 92	343						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(2)|endometrium(1)|large_intestine(3)|lung(4)|pancreas(1)|skin(1)|stomach(1)	13		Lung NSC(55;0.159)				CCATACAAATGTGAAGAATGT	0.343000													4	67					0.00909568	0.0100416	0.009096	1	0
NCOA5	57727	broad.mit.edu	37	20	44691230	44691230	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:44691230C>A	ENST00000290231.6	-	8	1613	c.1449G>T	c.(1447-1449)caG>caT	p.Q483H		NM_020967.2	NP_066018.1	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	483	Transcription activation.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(5)|liver(1)|lung(5)|ovary(1)|skin(2)|urinary_tract(1)	21		Myeloproliferative disorder(115;0.0122)				TGCTTGGAGGCTGATTGCCAG	0.572000													4	118					0.00909568	0.0100416	0.009096	1	0
OR4D6	219983	broad.mit.edu	37	11	59224942	59224942	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:59224942G>T	ENST00000300127.2	+	1	532	c.509G>T	c.(508-510)gGc>gTc	p.G170V		NM_001004708.1	NP_001004708.1	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D, member 6	170					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(3)|lung(20)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	34						CCCTTCTGTGGCCCCAACACA	0.498000													11	122					2.80697e-09	3.99343e-09	0.080935	1	0
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	C	G	rs58074988		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:12887606C>G	ENST00000535591.1	-	3	446	c.251G>C	c.(250-252)tGc>tCc	p.C84S		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	84								p.C84S(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						ATTGAGGAAGCACCCATGGGC	0.483000													4	203					0	0	0.029380	0	0
TP53	7157	broad.mit.edu	37	17	7578469	7578469	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:7578469C>A	ENST00000420246.2	-	5	593	c.461G>T	c.(460-462)gGc>gTc	p.G154V	TP53_ENST00000445888.2_Missense_Mutation_p.G154V|TP53_ENST00000413465.2_Missense_Mutation_p.G154V|TP53_ENST00000455263.2_Missense_Mutation_p.G154V|TP53_ENST00000269305.4_Missense_Mutation_p.G154V|TP53_ENST00000359597.4_Missense_Mutation_p.G154V	NM_001126114.2|NM_001276696.1	NP_001119586.1|NP_001263625.1	P04637	P53_HUMAN	tumor protein p53	154	Interaction with AXIN1 (By similarity).|Interaction with HIPK1 (By similarity).|Required for interaction with FBXO42.		G -> A (in sporadic cancers; somatic mutation).|G -> C (in a sporadic cancer; somatic mutation).|G -> D (in sporadic cancers; somatic mutation).|G -> I (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> S (in sporadic cancers; somatic mutation).|G -> V (in a brain tumor with no family history; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G154V(46)|p.0?(8)|p.G154D(6)|p.?(5)|p.P152fs*14(5)|p.G61V(3)|p.G22V(3)|p.G154I(3)|p.T155_R156insDSTPPPGT(3)|p.G154fs*14(2)|p.P153fs*26(2)|p.P153fs*22(2)|p.T23_R24insDSTPPPGT(1)|p.P151_V173del23(1)|p.D148_T155delDSTPPPGT(1)|p.G154A(1)|p.D148fs*23(1)|p.T62_R63insDSTPPPGT(1)|p.Q144_G154del11(1)|p.S149fs*72(1)|p.G154fs*22(1)|p.G154_R156delGTR(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GACGCGGGTGCCGGGCGGGGG	0.607000		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			4	78					0.014758	0.0160362	0.014758	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125555845	125555845	+	Silent	SNP	C	C	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:125555845C>A	ENST00000431078.1	+	19	3526	c.3162C>A	c.(3160-3162)ctC>ctA	p.L1054L		NM_130773.2	NP_570129.1	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5	1054	Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(24)|lung(100)|ovary(10)|prostate(12)|skin(4)|upper_aerodigestive_tract(3)	176				BRCA - Breast invasive adenocarcinoma(221;0.248)		GTCTTTTGCTCTTTATCAATT	0.473000													6	103					2.74318e-10	3.98483e-10	0.058154	1	0
KDM4A	9682	broad.mit.edu	37	1	44156564	44156565	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:44156564_44156565insC	ENST00000372396.3	+	14	2220_2221	c.2086_2087insC	c.(2086-2088)cccfs	p.P696fs		NM_014663.2	NP_055478.2	O75164	KDM4A_HUMAN	lysine (K)-specific demethylase 4A	696					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			breast(2)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(6)|lung(13)|prostate(1)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(1)	37						TTCAGATTTAGCCCCCCAGAAG	0.470													10	280	---	---	---	---					
ZRANB2-AS2	100852410	broad.mit.edu	37	1	71581641	71581641	+	RNA	DEL	A	A	-	rs78212186		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:71581641delA	ENST00000455406.1	+	0	131				ZRANB2-AS2_ENST00000415780.1_RNA|ZRANB2-AS2_ENST00000596952.1_RNA	NR_046217.1																						tctaaaaaagaaaaaaaaaaa	0.373													2	4	---	---	---	---					
LOC101927587	101927587	broad.mit.edu	37	1	84247695	84247696	+	RNA	INS	-	-	G	rs78417642	byFrequency	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:84247695_84247696insG	ENST00000417975.1	-	0	178																											ggatttttactggggggctagt	0.406													3	5	---	---	---	---					
LOC101927587	101927587	broad.mit.edu	37	1	84290173	84290174	+	RNA	INS	-	-	T	rs34094074		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:84290173_84290174insT	ENST00000417975.1	-	0	178																											cttcctttttcttttttttttt	0.332													2	4	---	---	---	---					
LOC101928270	101928270	broad.mit.edu	37	1	99971244	99971244	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:99971244delA	ENST00000438829.2	-	0	23																											gaagaggtggaaaaagacatt	0.274													2	4	---	---	---	---					
SLC25A24P1	727941	broad.mit.edu	37	1	108867161	108867164	+	RNA	DEL	AGTG	AGTG	-	rs112222462		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:108867161_108867164delAGTG	ENST00000411846.1	+	0	491																											tggacaacatagtgagacccctcc	0.515													4	7	---	---	---	---					
RP11-417J8.2	0	broad.mit.edu	37	1	142572757	142572758	+	RNA	INS	-	-	C	rs78821059	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:142572757_142572758insC	ENST00000415979.2	-	0	215																											ACTATTCTTTTCCGttttttaa	0.361													3	4	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142640292	142640292	+	RNA	DEL	A	A	-	rs150924664		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:142640292delA	ENST00000369381.2	-	0	2507				RP11-417J8.3_ENST00000426408.1_lincRNA																							gtgtctgcatagcatattttt	0.368													2	4	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	143998886	143998887	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:143998886_143998887insT	ENST00000467933.1	+	0	915																											tgttcctgtggtttttgttttg	0.416													2	4	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	144007216	144007217	+	RNA	INS	-	-	A	rs113349318		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:144007216_144007217insA	ENST00000467933.1	+	0	915																											catgcaccacccccccagctaa	0.540													3	4	---	---	---	---					
NBPF18P	441908	broad.mit.edu	37	1	151999540	151999540	+	RNA	DEL	T	T	-	rs111736581	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:151999540delT	ENST00000432386.1	+	0	2919					NR_103561.1																						tctcttgttatttatcttatc	0.423													3	3	---	---	---	---					
PYGO2	90780	broad.mit.edu	37	1	154932096	154932097	+	Frame_Shift_Ins	INS	-	-	G	rs141564510	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:154932096_154932097insG	ENST00000368457.2	-	3	550_551	c.379_380insC	c.(379-381)gccfs	p.A127fs	PYGO2_ENST00000368456.1_Frame_Shift_Ins_p.A90fs	NM_138300.3	NP_612157.1	Q9BRQ0	PYGO2_HUMAN	pygopus family PHD finger 2	127	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			endometrium(2)|large_intestine(2)|lung(3)|skin(2)|urinary_tract(1)	10	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			ACGGAGTGGCTGGGGGCCCCCT	0.673													3	3	---	---	---	---					
LOC646268	646268	broad.mit.edu	37	1	158104146	158104147	+	RNA	INS	-	-	T	rs143635161		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:158104146_158104147insT	ENST00000414848.1	-	0	142					NR_033946.1																						cttatctttccttttttttttt	0.297													4	2	---	---	---	---					
RP11-479J7.1	0	broad.mit.edu	37	1	166370057	166370058	+	RNA	INS	-	-	T	rs149001094	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:166370057_166370058insT	ENST00000448643.1	-	0	176																											atggatcaggctttttgtcata	0.267													5	4	---	---	---	---					
LINC00970	101978719	broad.mit.edu	37	1	168951018	168951019	+	RNA	INS	-	-	A	rs71810449		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:168951018_168951019insA	ENST00000366408.3	-	0	209																											tcatctcaaagaaaaaaaaaaa	0.446													4	6	---	---	---	---					
RP1-45C12.1	0	broad.mit.edu	37	1	171214864	171214864	+	RNA	DEL	C	C	-	rs138208493	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:171214864delC	ENST00000455124.1	-	0	415																											cagaatatttcctaaagagca	0.453													2	4	---	---	---	---					
LOC102724661	102724661	broad.mit.edu	37	1	177321265	177321266	+	RNA	DEL	GT	GT	-	rs72557419		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:177321265_177321266delGT	ENST00000451341.1	+	0	65																											gtgtgacagagtgtgtgtgtgt	0.495													4	9	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187145614	187145615	+	RNA	INS	-	-	A	rs1924751	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:187145614_187145615insA	ENST00000458683.1	+	0	105																											ttctattctctgtttttttttt	0.262													2	4	---	---	---	---					
LINC01036	104169671	broad.mit.edu	37	1	187229785	187229785	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:187229785delA	ENST00000458683.1	+	0	105																											AGAATTCCCTAAAAAAATGGA	0.378													2	4	---	---	---	---					
RP4-781K5.6	0	broad.mit.edu	37	1	234826368	234826369	+	RNA	INS	-	-	A	rs78348727		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr1:234826368_234826369insA	ENST00000442382.1	-	0	96																											gactctgtctcaaaaaaaaaaa	0.396													2	4	---	---	---	---					
LINC01250	101927554	broad.mit.edu	37	2	3050117	3050117	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:3050117delA	ENST00000457478.1	-	0	438																											gtggtgtgtgatgtgtggtgt	0.428													3	3	---	---	---	---					
LINC01248	102723818	broad.mit.edu	37	2	5812807	5812808	+	RNA	INS	-	-	C	rs147629174	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:5812807_5812808insC	ENST00000453678.1	-	0	258				AC107057.2_ENST00000458264.1_RNA																							AGAAGGTAGTGCCCCCCCTTTT	0.515													3	3	---	---	---	---					
LINC00299	339789	broad.mit.edu	37	2	8441369	8441369	+	RNA	DEL	G	G	-	rs35181863		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:8441369delG	ENST00000442956.1	-	0	453																											actctcaccagtgcattcctt	0.522													3	4	---	---	---	---					
LINC00276	100499171	broad.mit.edu	37	2	14411348	14411349	+	RNA	INS	-	-	A	rs144603529	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:14411348_14411349insA	ENST00000418420.1	-	0	251					NR_103814.1																						tgtctcaaaagaaaaaaaaaaT	0.386													3	3	---	---	---	---					
LINC00276	100499171	broad.mit.edu	37	2	14489935	14489936	+	RNA	INS	-	-	AAAC	rs147558988	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:14489935_14489936insAAAC	ENST00000418420.1	-	0	116					NR_103814.1																						ctcctcctcaaaaacaaacaaa	0.441													4	2	---	---	---	---					
AC068490.2	0	broad.mit.edu	37	2	22378672	22378673	+	RNA	DEL	AC	AC	-	rs72140821		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:22378672_22378673delAC	ENST00000450551.1	-	0	200																											acacacacatacacacacacac	0.282													2	4	---	---	---	---					
LOC101929418	101929418	broad.mit.edu	37	2	30308682	30308682	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:30308682delT	ENST00000453606.1	-	0	109																											gtccagctgattttttttgta	0.552													2	4	---	---	---	---					
LINC01317	104355287	broad.mit.edu	37	2	34004062	34004063	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:34004062_34004063insT	ENST00000366209.2	+	0	68																											ATTCCTTACCCTTTTTTTTCAT	0.272													2	4	---	---	---	---					
AC073218.1	0	broad.mit.edu	37	2	34637895	34637896	+	RNA	DEL	GT	GT	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:34637895_34637896delGT	ENST00000422558.1	+	0	475																											AAGAAATGAAgtgtgtgtgtgt	0.356													2	4	---	---	---	---					
AC012593.1	0	broad.mit.edu	37	2	35135721	35135721	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:35135721delA	ENST00000588944.1	+	0	115																											ATGATTTGGGAAAAAAAATAG	0.358													2	4	---	---	---	---					
AC006369.3	0	broad.mit.edu	37	2	37972967	37972967	+	RNA	DEL	T	T	-	rs68078473		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:37972967delT	ENST00000431712.1	+	0	311																											TACTATAGACTTTTTTTTTCT	0.353													5	5	---	---	---	---					
RP11-482H16.1	0	broad.mit.edu	37	2	56396340	56396340	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:56396340delA	ENST00000607540.1	+	0	111				RP11-481J13.1_ENST00000606639.1_lincRNA																							tgactagaacaaaaaaaggca	0.423													2	4	---	---	---	---					
AC007386.4	0	broad.mit.edu	37	2	65268598	65268598	+	RNA	DEL	A	A	-	rs112509531		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:65268598delA	ENST00000430134.1	-	0	638																											actctgtctcaaaaaaaaaaa	0.458													3	3	---	---	---	---					
AC092620.2	0	broad.mit.edu	37	2	139331586	139331587	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:139331586_139331587insG	ENST00000458007.2	+	0	302_303																											TTGCTGCTTTTGGGGGGGTGTT	0.436													2	4	---	---	---	---					
TEX41	401014	broad.mit.edu	37	2	145746571	145746576	+	RNA	DEL	GAGAGA	GAGAGA	-	rs72145404		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:145746571_145746576delGAGAGA	ENST00000445791.1	+	0	307					NR_033870.2																						gtgtgtgtgtgAGAGAGAGAGAGAGA	0.437													3	5	---	---	---	---					
LOC101929231	101929231	broad.mit.edu	37	2	150486755	150486758	+	RNA	DEL	TTTG	TTTG	-	rs70994583		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:150486755_150486758delTTTG	ENST00000449714.1	+	0	655																											TTGTCAGTTTTTtgtatgtgtgtg	0.373													5	5	---	---	---	---					
LOC101929231	101929231	broad.mit.edu	37	2	150549114	150549115	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:150549114_150549115insC	ENST00000449714.1	+	0	655																											GCTGCTCAAGGCCCCCTTCCTT	0.510													2	4	---	---	---	---					
AC018731.3	0	broad.mit.edu	37	2	151991118	151991119	+	RNA	INS	-	-	AG	rs145602382	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:151991118_151991119insAG	ENST00000447078.1	-	0	156																											atcagaaaaaaagcatgaaaac	0.307													3	6	---	---	---	---					
AC009313.1	0	broad.mit.edu	37	2	161966307	161966308	+	RNA	INS	-	-	AC	rs58541006	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:161966307_161966308insAC	ENST00000425470.1	-	0	165																											tatatacaaatacacacacacg	0.396													5	2	---	---	---	---					
AC096649.3	0	broad.mit.edu	37	2	176227927	176227927	+	RNA	DEL	C	C	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:176227927delC	ENST00000438963.1	+	0	247																											CCATTCAGCACCTAGAGCTTT	0.348													2	4	---	---	---	---					
AC019330.1	0	broad.mit.edu	37	2	199568366	199568368	+	RNA	DEL	AGT	AGT	-	rs66474122		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:199568366_199568368delAGT	ENST00000440609.1	-	0	98																											tcacagagggagtagtaacactt	0.478													8	7	---	---	---	---					
AC018717.1	0	broad.mit.edu	37	2	199901857	199901857	+	RNA	DEL	A	A	-	rs5837662		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:199901857delA	ENST00000456031.1	-	0	114																											AACAAGACATAAAAAAAAAAA	0.279													2	4	---	---	---	---					
LINC00607	646324	broad.mit.edu	37	2	216522760	216522778	+	RNA	DEL	TCTTGCCTACCTAACATGG	TCTTGCCTACCTAACATGG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr2:216522760_216522778delTCTTGCCTACCTAACATGG	ENST00000445174.1	-	0	723				AC012668.2_ENST00000417485.2_lincRNA	NR_037195.1																						GAGTCTTTCCTCTTGCCTACCTAACATGGTCATCAGGGT	0.429													3	5	---	---	---	---					
GRM7-AS3	101927347	broad.mit.edu	37	3	6751821	6751822	+	RNA	INS	-	-	AT	rs146390960	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:6751821_6751822insAT	ENST00000433639.1	+	0	194																											AGAAATATCCCATATATATAtg	0.322													4	2	---	---	---	---					
HMGB1P5	10354	broad.mit.edu	37	3	22424406	22424406	+	RNA	DEL	A	A	-	rs35347330		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:22424406delA	ENST00000451497.1	+	0	971																											tttttttattaaaaaaaaaaa	0.353													3	4	---	---	---	---					
LINC00693	645206	broad.mit.edu	37	3	28793408	28793408	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:28793408delA	ENST00000432518.2	+	0	809				LINC00693_ENST00000445077.1_RNA|LINC00693_ENST00000443912.1_RNA	NR_038840.1																						gaaatacaacaaaaaaataga	0.353													2	4	---	---	---	---					
LOC102724297	102724297	broad.mit.edu	37	3	46439697	46439697	+	RNA	DEL	C	C	-	rs77949449		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:46439697delC	ENST00000451485.1	-	0	163																											gaccccaaaacccaggcgcgg	0.458													6	6	---	---	---	---					
RP11-260O18.1	0	broad.mit.edu	37	3	82292115	82292115	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:82292115delT	ENST00000470263.1	+	0	472																											ttatgcaagattttttttttt	0.408													2	4	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84766701	84766701	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:84766701delA	ENST00000484892.1	-	0	1846					NR_033860.1																						tctcgaaaagaaaaaaaaaaa	0.408													3	4	---	---	---	---					
RP11-325B23.2	0	broad.mit.edu	37	3	98125078	98125079	+	RNA	INS	-	-	C	rs34478586	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:98125078_98125079insC	ENST00000508616.1	+	0	188																											tgaaactatcatatttgcagac	0.361													3	3	---	---	---	---					
AADACL2-AS1	101928142	broad.mit.edu	37	3	151522735	151522735	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:151522735delT	ENST00000483843.2	-	0	439				RP11-64D22.5_ENST00000485020.1_lincRNA|RP11-454C18.2_ENST00000475855.1_RNA																							GTAGCTAGTATTTTTTTTTTC	0.338													3	6	---	---	---	---					
RP11-23D24.2	0	broad.mit.edu	37	3	153551152	153551153	+	RNA	DEL	AC	AC	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr3:153551152_153551153delAC	ENST00000488210.1	-	0	477																											acacacgcaaacacacacacac	0.426													3	5	---	---	---	---					
LINC00504	201853	broad.mit.edu	37	4	14479849	14479850	+	RNA	INS	-	-	GTAA	rs138929887	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:14479849_14479850insGTAA	ENST00000505089.1	-	0	461																											gccaaaaatctgtaagtctgct	0.505													5	5	---	---	---	---					
RP11-17E2.2	0	broad.mit.edu	37	4	22306841	22306841	+	RNA	DEL	C	C	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:22306841delC	ENST00000510705.3	+	0	859																											TGGTTTCAATCTTTTATTTGT	0.254													3	3	---	---	---	---					
GBA3	57733	broad.mit.edu	37	4	22754271	22754271	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:22754271delA	ENST00000511446.1	+	0	1210				GBA3_ENST00000508166.1_RNA|GBA3_ENST00000503442.1_RNA	NM_001277225.1	NP_001264154.1	Q9H227	GBA3_HUMAN	glucosidase, beta, acid 3 (gene/pseudogene)						glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity			breast(1)|kidney(2)|large_intestine(4)|lung(20)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	33						GGAATATGAGAAAAAAAAAAG	0.308													2	4	---	---	---	---					
RP11-123O22.1	0	broad.mit.edu	37	4	28522620	28522621	+	RNA	INS	-	-	C	rs5857087		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:28522620_28522621insC	ENST00000509416.1	+	0	402																											ccttccttccttccttcctctc	0.347													4	9	---	---	---	---					
LOC101927237	101927237	broad.mit.edu	37	4	68307833	68307835	+	RNA	DEL	CAA	CAA	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:68307833_68307835delCAA	ENST00000502400.1	-	0	34																											gtgccgtaggcaacaacaacaac	0.345													2	4	---	---	---	---					
RASGEF1B	153020	broad.mit.edu	37	4	82864861	82864862	+	RNA	INS	-	-	A	rs61493563	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:82864861_82864862insA	ENST00000510780.1	-	0	244																											atagatattccaataccctgat	0.272													4	4	---	---	---	---					
AGPAT9	84803	broad.mit.edu	37	4	84465717	84465717	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:84465717delC	ENST00000395226.2	+	3	388	c.170delC	c.(169-171)acfs	p.T57fs	AGPAT9_ENST00000264409.4_Frame_Shift_Del_p.T57fs	NM_001256421.1	NP_001243350.1	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	57					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			endometrium(1)|kidney(1)|large_intestine(4)|lung(4)|skin(3)	13		Hepatocellular(203;0.114)				GAAAAAGGAACCCCAAAGGAG	0.348													12	208	---	---	---	---					
SMARCAD1	56916	broad.mit.edu	37	4	95199781	95199782	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:95199781_95199782insC	ENST00000354268.4	+	18	2266_2267	c.2193_2194insC	c.(2191-2196)ttccccfs	p.FP731fs	SMARCAD1_ENST00000509418.1_Frame_Shift_Ins_p.FP301fs|SMARCAD1_ENST00000457823.2_Frame_Shift_Ins_p.FP731fs			Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	731					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			breast(2)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(11)|liver(2)|lung(15)|ovary(2)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	44				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TCAAGCAGTTACCCCCCAAGAA	0.322													8	204	---	---	---	---					
RP11-729M20.1	0	broad.mit.edu	37	4	105285327	105285328	+	RNA	DEL	CT	CT	-	rs111780886		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:105285327_105285328delCT	ENST00000514327.1	+	0	250																											ctccgccctcctctctctctct	0.505													2	4	---	---	---	---					
LOC101929468	101929468	broad.mit.edu	37	4	105463634	105463635	+	RNA	INS	-	-	AGA	rs142362671	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:105463634_105463635insAGA	ENST00000500179.1	+	0	96																											aaccagttgagagaacataaat	0.416													5	8	---	---	---	---					
LINC01256	104355285	broad.mit.edu	37	4	133581146	133581146	+	RNA	DEL	T	T	-	rs72325917		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:133581146delT	ENST00000513270.1	+	0	323																											GAGTAAAAGGTTTTTTTTTTC	0.294													4	3	---	---	---	---					
RP11-138I17.1	0	broad.mit.edu	37	4	137739585	137739585	+	RNA	DEL	T	T	-	rs35268274		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:137739585delT	ENST00000505736.1	-	0	155																											cctttcttacttttttccctt	0.343													5	3	---	---	---	---					
SLC7A11-AS1	641364	broad.mit.edu	37	4	139050732	139050733	+	RNA	DEL	TA	TA	-	rs151123087		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:139050732_139050733delTA	ENST00000510767.1	+	0	1725				SLC7A11-AS1_ENST00000512786.1_RNA|LINC00616_ENST00000514600.1_lincRNA	NR_038380.1																						gcaaactatgtaccagatgttg	0.386													2	4	---	---	---	---					
RP11-98O2.1	0	broad.mit.edu	37	4	139703035	139703036	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:139703035_139703036insT	ENST00000502606.1	+	0	144																											ataatcatgtgttttttttttt	0.347													3	5	---	---	---	---					
RP11-371F15.3	0	broad.mit.edu	37	4	139788195	139788196	+	RNA	INS	-	-	GATACACT	rs141373953		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:139788195_139788196insGATACACT	ENST00000507038.1	-	0	158				RP11-371F15.3_ENST00000511951.1_RNA																							acacaccacacaatacacacca	0.485													3	4	---	---	---	---					
RP11-371F15.3	0	broad.mit.edu	37	4	139790284	139790288	+	RNA	DEL	GGGAG	GGGAG	-	rs113211271		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:139790284_139790288delGGGAG	ENST00000507038.1	-	0	158				RP11-371F15.3_ENST00000511951.1_RNA																							gggaagggatgggaggggagggaag	0.595													5	5	---	---	---	---					
APELA	100506013	broad.mit.edu	37	4	165800715	165800716	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:165800715_165800716insC	ENST00000507152.1	+	0	494					NR_038825.1																						tcccacctcagccccccaagta	0.559													2	4	---	---	---	---					
RP11-310I9.1	0	broad.mit.edu	37	4	168976936	168976936	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:168976936delT	ENST00000506926.1	-	0	103																											TATGAAATGATTTTTTTTGAT	0.323													2	4	---	---	---	---					
LOC101928877	101928877	broad.mit.edu	37	4	185976539	185976540	+	RNA	INS	-	-	A	rs144141808	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:185976539_185976540insA	ENST00000509017.1	+	0	404																											aatgaaaaaagaaaaaaaaaac	0.371													5	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190807503	190807506	+	RNA	DEL	CACA	CACA	-	rs111941233		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:190807503_190807506delCACA	ENST00000511785.1	-	0	231																											cagcagggtgcacacctagcccag	0.529													2	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190814786	190814786	+	RNA	DEL	T	T	-	rs113408955		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr4:190814786delT	ENST00000511785.1	-	0	231																											tttatccatctatccctcaat	0.378													3	5	---	---	---	---					
LOC285692	285692	broad.mit.edu	37	5	9827711	9827712	+	RNA	DEL	CA	CA	-	rs148705567		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:9827711_9827712delCA	ENST00000511616.1	-	0	521					NR_027112.2																						tggtggcatgcacacacacaca	0.510													6	7	---	---	---	---					
CTD-2066L21.3	0	broad.mit.edu	37	5	33041857	33041857	+	RNA	DEL	G	G	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:33041857delG	ENST00000510327.1	-	0	346																											GGCACCCACCGGCCAGGCCTA	0.647													2	4	---	---	---	---					
LOC100506526	100506526	broad.mit.edu	37	5	61030956	61030956	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:61030956delT	ENST00000506550.1	-	0	292																											GAGAGTTACGTTTTTAATTAT	0.358													2	4	---	---	---	---					
RP11-434D9.2	0	broad.mit.edu	37	5	67182974	67182975	+	RNA	INS	-	-	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:67182974_67182975insA	ENST00000514791.1	-	0	349																		p.0?(1)									GAGTCCCTGAGAAAAAGGCAAT	0.386													2	4	---	---	---	---					
PCSK1	5122	broad.mit.edu	37	5	95746639	95746640	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:95746639_95746640insC	ENST00000311106.3	-	8	1170_1171	c.933_934insG	c.(931-936)gggtcafs	p.S312fs	PCSK1_ENST00000513085.1_Intron|PCSK1_ENST00000508626.1_Frame_Shift_Ins_p.S265fs|CTD-2337A12.1_ENST00000502645.2_RNA	NM_000439.4|NM_001177876.1	NP_000430.3|NP_001171347.1	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	312	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity	p.R312C(1)		NS(1)|endometrium(3)|kidney(3)|large_intestine(5)|lung(14)|ovary(2)|prostate(3)|skin(3)|urinary_tract(2)	36		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTCCCTGACGCCCCCCGTTTC	0.530													9	356	---	---	---	---					
CTD-2337A12.1	0	broad.mit.edu	37	5	95813011	95813012	+	RNA	DEL	CA	CA	-	rs10598300		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:95813011_95813012delCA	ENST00000502645.2	+	0	354																											cgcacgcgtgcacacacacaca	0.416													2	4	---	---	---	---					
CAST	831	broad.mit.edu	37	5	95871090	95871091	+	RNA	INS	-	-	A	rs138955939	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:95871090_95871091insA	ENST00000502645.2	+	0	354																											agataaaatgtaaaaaatcagt	0.322													6	3	---	---	---	---					
RP11-155G15.2	0	broad.mit.edu	37	5	96654596	96654597	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:96654596_96654597insG	ENST00000504578.1	+	0	71																											aggggagagatgggggagttgc	0.460													2	4	---	---	---	---					
LOC285638	285638	broad.mit.edu	37	5	108626560	108626561	+	RNA	INS	-	-	A	rs138092354	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:108626560_108626561insA	ENST00000512693.1	-	0	4472																											cctgaccagtggagagctccag	0.599													3	4	---	---	---	---					
LOC285638	285638	broad.mit.edu	37	5	108630041	108630041	+	RNA	DEL	A	A	-	rs58790379		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:108630041delA	ENST00000512693.1	-	0	4472																											aagtaggcttatatccctgga	0.358													5	2	---	---	---	---					
LINC01183	728586	broad.mit.edu	37	5	127182512	127182525	+	RNA	DEL	AAAAAAAAAAAAAA	AAAAAAAAAAAAAA	-	rs57842409		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:127182512_127182525delAAAAAAAAAAAAAA	ENST00000514853.2	+	0	467				CTC-228N24.2_ENST00000507509.1_lincRNA																							TCAATAAAGCaaaaaaaaaaaaaaaaaaaaaaaa	0.397													2	4	---	---	---	---					
CTC-321K16.1	0	broad.mit.edu	37	5	134936695	134936698	+	RNA	DEL	ACTG	ACTG	-	rs4037079		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:134936695_134936698delACTG	ENST00000514446.1	+	0	413				CTC-321K16.1_ENST00000509372.1_RNA																							TTTTTGACTAACTGACTGACTAAA	0.480													4	2	---	---	---	---					
NPY6R	4888	broad.mit.edu	37	5	137141927	137141928	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:137141927_137141928insC	ENST00000510937.1	+	0	260					NR_002713.3																						GATGAGGAGTACCCCCCCACCT	0.411													3	6	---	---	---	---					
CTD-2532K18.1	0	broad.mit.edu	37	5	174256909	174256909	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:174256909delA	ENST00000502684.1	+	0	50																											aaactccaataaatctctgga	0.428													2	4	---	---	---	---					
THOC3	84321	broad.mit.edu	37	5	175365109	175365110	+	RNA	INS	-	-	A	rs143185541		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr5:175365109_175365110insA	ENST00000502813.1	-	0	87																											TACATACATTTAAAAAAAAAAA	0.441													4	2	---	---	---	---					
LY86-AS1	285780	broad.mit.edu	37	6	6581288	6581289	+	RNA	INS	-	-	A	rs11381372	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:6581288_6581289insA	ENST00000435641.1	-	0	388				LY86-AS1_ENST00000447858.1_RNA|LY86-AS1_ENST00000429345.1_RNA																							GCAGAGGCCACAGCCAATGAAG	0.441													3	4	---	---	---	---					
RP11-716O23.1	0	broad.mit.edu	37	6	11419717	11419725	+	RNA	DEL	CAGTGGCCC	CAGTGGCCC	-	rs57242259		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:11419717_11419725delCAGTGGCCC	ENST00000419796.1	+	0	230																											gtcccagtgtcagtggccccagtggcccc	0.598													3	4	---	---	---	---					
CMAHP	8418	broad.mit.edu	37	6	25089567	25089568	+	RNA	INS	-	-	A	rs3838674	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:25089567_25089568insA	ENST00000377989.4	-	0	1962																				NS(1)	1						ATGCAGTCTGCCCCAGCTTCAC	0.505													3	6	---	---	---	---					
LOC101928280	101928280	broad.mit.edu	37	6	69013323	69013323	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:69013323delT	ENST00000445346.1	-	0	237																											ccctgctttcttttttttttt	0.313													2	4	---	---	---	---					
RP1-292B18.4	0	broad.mit.edu	37	6	151518963	151518965	+	RNA	DEL	AAG	AAG	-	rs57483688		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr6:151518963_151518965delAAG	ENST00000415477.1	-	0	66																											agaaaaagaaaagagagaaagaa	0.340													3	6	---	---	---	---					
LOC100505938	100505938	broad.mit.edu	37	7	8356992	8356993	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:8356992_8356993insG	ENST00000424460.1	+	0	493				RP4-594A5.1_ENST00000435967.1_lincRNA																							gttaatgggtaggggggcctgt	0.470													2	4	---	---	---	---					
LOC101927630	101927630	broad.mit.edu	37	7	17593181	17593182	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:17593181_17593182insG	ENST00000451792.1	-	0	158																											aagagtgatctgggggggcttt	0.366													3	6	---	---	---	---					
FAM126A	84668	broad.mit.edu	37	7	22945744	22945745	+	RNA	INS	-	-	T	rs75533425	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:22945744_22945745insT	ENST00000421730.1	-	0	137																											GAATGCGGCAATTTTTTTTCCA	0.307													3	4	---	---	---	---					
JAZF1-AS1	100128081	broad.mit.edu	37	7	28264832	28264833	+	RNA	INS	-	-	AC	rs10635411	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:28264832_28264833insAC	ENST00000455963.1	+	0	301				JAZF1-AS1_ENST00000436758.1_RNA																							tgcacacacagacacacacaca	0.470													3	3	---	---	---	---					
NPSR1-AS1	404744	broad.mit.edu	37	7	34489398	34489399	+	RNA	INS	-	-	AC	rs71892604	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:34489398_34489399insAC	ENST00000419766.1	-	0	310					NR_033664.1|NR_033665.1																						TTCTACTTTCTacacacacaca	0.371													3	4	---	---	---	---					
AC005027.3	0	broad.mit.edu	37	7	41713985	41713985	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:41713985delT	ENST00000416150.1	-	0	52																											TCTATGGCCATTTTTTTTTTG	0.274													3	3	---	---	---	---					
AC004901.1	0	broad.mit.edu	37	7	47041085	47041086	+	RNA	INS	-	-	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:47041085_47041086insA	ENST00000433337.1	-	0	237				AC004870.3_ENST00000412996.1_RNA																							ATAACAACAACAAAAAAAAAAT	0.297													2	4	---	---	---	---					
RP5-921G16.1	0	broad.mit.edu	37	7	123781072	123781073	+	RNA	INS	-	-	T	rs150645666	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:123781072_123781073insT	ENST00000484322.1	+	0	168																											tttgatttttcttttttttgat	0.386													3	5	---	---	---	---					
CCDC136	64753	broad.mit.edu	37	7	128457829	128457830	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:128457829_128457830insC	ENST00000297788.4	+	17	3748_3749	c.3381_3382insC	c.(3379-3384)aaccccfs	p.NP1127fs	CCDC136_ENST00000471729.1_Intron|CCDC136_ENST00000487361.1_Frame_Shift_Ins_p.NP488fs|CCDC136_ENST00000464832.1_Frame_Shift_Ins_p.NP419fs|CCDC136_ENST00000378685.4_Frame_Shift_Ins_p.NP407fs	NM_022742.4	NP_073579.4	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	1127						integral to membrane	protein binding			breast(2)|endometrium(3)|kidney(1)|large_intestine(4)|lung(11)|ovary(3)	24						CTACCCCCAATCCCCCCATCTT	0.520													8	849	---	---	---	---					
EPHA1-AS1	285965	broad.mit.edu	37	7	143124168	143124171	+	RNA	DEL	AGAG	AGAG	-	rs141124951		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:143124168_143124171delAGAG	ENST00000429289.1	+	0	206					NR_033897.1																						GTACTGAGAAAGAGAGAGAAAGTC	0.392													5	6	---	---	---	---					
C7orf13	129790	broad.mit.edu	37	7	156363326	156363327	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr7:156363326_156363327insG	ENST00000447933.1	-	0	300																											cagggaagagtgggggggcggg	0.436													3	5	---	---	---	---					
PRSS51	346702	broad.mit.edu	37	8	10367198	10367212	+	RNA	DEL	AAAACAAAACAAAAC	AAAACAAAACAAAAC	-	rs59689112	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:10367198_10367212delAAAACAAAACAAAAC	ENST00000523024.1	-	0	156				PRSS51_ENST00000521149.1_RNA																							aaaaaaaaaaaaaacaaaacaaaacaaaaaacaaa	0.223													6	0	---	---	---	---					
RP11-468H14.2	0	broad.mit.edu	37	8	17004768	17004771	+	RNA	DEL	TCTC	TCTC	-	rs36033398		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:17004768_17004771delTCTC	ENST00000513892.2	+	0	2007																											cttctctctgtctctctctctctc	0.475													3	4	---	---	---	---					
RP11-108E14.1	0	broad.mit.edu	37	8	20513425	20513425	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:20513425delT	ENST00000517706.1	-	0	540																											ttctaataggtttttttttaa	0.348													2	4	---	---	---	---					
RP11-566H8.3	0	broad.mit.edu	37	8	31236454	31236454	+	RNA	DEL	T	T	-	rs3074104		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:31236454delT	ENST00000524022.1	+	0	213																											tgttgcaagcttttttttttt	0.313													2	4	---	---	---	---					
RP11-359E19.2	0	broad.mit.edu	37	8	39984063	39984064	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:39984063_39984064insT	ENST00000521257.1	+	0	351																											aaaaataagccttttttttttt	0.446													3	5	---	---	---	---					
RP11-659E9.2	0	broad.mit.edu	37	8	63926829	63926829	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:63926829delA	ENST00000524309.1	+	0	139																											AGGAGTTCCTAAATTTCATAC	0.478													2	4	---	---	---	---					
ZFHX4-AS1	100192378	broad.mit.edu	37	8	77592697	77592698	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:77592697_77592698insC	ENST00000518143.1	-	0	227				ZFHX4-AS1_ENST00000522961.1_RNA	NR_024360.1																						ACTGTACCCCACCCCCCCATCA	0.371													4	2	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92756466	92756466	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:92756466delA	ENST00000518416.1	-	0	415																											cagaagcaataaaaaaAAAAA	0.403													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94601601	94601601	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:94601601delA	ENST00000501400.1	-	0	948					NR_033858.1																						GCTTCAATTTAAAAAAAAAAA	0.413													3	6	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96298904	96298905	+	RNA	INS	-	-	TC	rs142767540	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:96298904_96298905insTC	ENST00000521905.1	+	0	55																											AGCCAGAAACTTTTTTTGACAT	0.347													4	3	---	---	---	---					
C8orf37-AS1	100616530	broad.mit.edu	37	8	96330983	96330986	+	RNA	DEL	TATC	TATC	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:96330983_96330986delTATC	ENST00000521905.1	+	0	126																											tctccacttttatctatctatctc	0.436													6	10	---	---	---	---					
LOC101927172	101927172	broad.mit.edu	37	8	102494532	102494532	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:102494532delT	ENST00000520268.1	-	0	50																											attcttgtacttttttttttt	0.264													2	4	---	---	---	---					
LINC01181	379034	broad.mit.edu	37	8	104138484	104138484	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:104138484delT	ENST00000503718.2	+	0	182																											AGTGGAAGTCTTTTTTTTTTT	0.333													2	4	---	---	---	---					
RP11-775B15.2	0	broad.mit.edu	37	8	120458962	120458963	+	RNA	INS	-	-	T	rs56778545		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:120458962_120458963insT	ENST00000519786.1	-	0	64																											gctttaagTTCTTTTTTTTTTT	0.490													3	5	---	---	---	---					
RP11-513H8.1	0	broad.mit.edu	37	8	135306455	135306456	+	RNA	INS	-	-	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr8:135306455_135306456insA	ENST00000523317.1	-	0	84																											catttactatgttccaggaact	0.436													2	4	---	---	---	---					
LURAP1L-AS1	101929467	broad.mit.edu	37	9	12729307	12729307	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:12729307delA	ENST00000417638.1	-	0	272																											attcaaccataaaaagcagag	0.393													2	4	---	---	---	---					
LURAP1L-AS1	101929467	broad.mit.edu	37	9	12741290	12741291	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:12741290_12741291insT	ENST00000417638.1	-	0	272																											ttttaGCAAAGTttttttttct	0.307													2	4	---	---	---	---					
TJP2	9414	broad.mit.edu	37	9	71835952	71835953	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:71835952_71835953insG	ENST00000377245.4	+	5	700_701	c.492_493insG	c.(490-495)caggggfs	p.QG164fs	TJP2_ENST00000453658.2_Frame_Shift_Ins_p.QG141fs|TJP2_ENST00000535702.1_Frame_Shift_Ins_p.QG168fs|TJP2_ENST00000265384.7_Frame_Shift_Ins_p.QG164fs|TJP2_ENST00000348208.4_Frame_Shift_Ins_p.QG164fs|TJP2_ENST00000539225.1_Frame_Shift_Ins_p.QG195fs	NM_004817.3	NP_004808.2	Q9UDY2	ZO2_HUMAN	tight junction protein 2	164					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(8)|kidney(2)|large_intestine(5)|lung(9)|prostate(3)|skin(3)|soft_tissue(1)|upper_aerodigestive_tract(1)	35						TGAACAGCCATGGGGGGCGCAG	0.683													2	4	---	---	---	---					
LOC101927358	101927358	broad.mit.edu	37	9	76991703	76991704	+	RNA	INS	-	-	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:76991703_76991704insA	ENST00000423681.1	+	0	540																											accccatcttcaaaaatggcgg	0.431													2	4	---	---	---	---					
RP11-395D3.1	0	broad.mit.edu	37	9	89306992	89306993	+	RNA	INS	-	-	T	rs143731149	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:89306992_89306993insT	ENST00000443163.1	+	0	166																											gatgaggcagattttttttttc	0.381													4	5	---	---	---	---					
LINC01508	101927873	broad.mit.edu	37	9	93141539	93141540	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:93141539_93141540insC	ENST00000425666.1	-	0	261																											TAtgaattgtgccccccacaaa	0.396													2	4	---	---	---	---					
RP11-308N19.1	0	broad.mit.edu	37	9	109108841	109108842	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:109108841_109108842insT	ENST00000435485.1	+	0	171																											tctcagaaaagttttttttttg	0.287													2	4	---	---	---	---					
RP11-202G18.1	0	broad.mit.edu	37	9	113956273	113956273	+	RNA	DEL	A	A	-	rs61132599		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:113956273delA	ENST00000426204.1	-	0	370																											actcactcagaaaaaaggtct	0.468													3	5	---	---	---	---					
RP11-202G18.1	0	broad.mit.edu	37	9	114033773	114033774	+	RNA	INS	-	-	C	rs71494826	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr9:114033773_114033774insC	ENST00000426204.1	-	0	370																											GTTTCAAGTTTCCCTTTTCTCA	0.396													4	3	---	---	---	---					
LINC00202-2	731789	broad.mit.edu	37	10	26939996	26939996	+	RNA	DEL	T	T	-	rs67889976		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:26939996delT	ENST00000544033.1	+	0	5653					NR_026794.1																						CTCCATAACATTTTTTCAACC	0.318													4	4	---	---	---	---					
RP11-672F9.1	0	broad.mit.edu	37	10	38605725	38605726	+	RNA	DEL	CA	CA	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:38605725_38605726delCA	ENST00000450980.1	+	0	313																											TGTGTGCACGCACACACACACA	0.391													2	4	---	---	---	---					
CEP164P1	100289237	broad.mit.edu	37	10	45533255	45533256	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:45533255_45533256insT	ENST00000456938.2	-	0	411																											tacaacaaaccccctgatacct	0.391													2	4	---	---	---	---					
NUTM2B-AS1	101060691	broad.mit.edu	37	10	81513560	81513560	+	RNA	DEL	G	G	-	rs75607845		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:81513560delG	ENST00000601369.1	-	0	59				RP11-119F19.2_ENST00000596088.1_RNA|RP11-119F19.2_ENST00000600376.1_RNA																							aaaaaaaaaagaaaaaaacaa	0.338													2	4	---	---	---	---					
LOC101926942	101926942	broad.mit.edu	37	10	92289399	92289400	+	RNA	DEL	TG	TG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:92289399_92289400delTG	ENST00000418379.1	-	0	74																											AAGGTTGCACtgtgtgtgtgtg	0.426													3	3	---	---	---	---					
OLMALINC	90271	broad.mit.edu	37	10	102136361	102136361	+	RNA	DEL	A	A	-	rs78452484		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:102136361delA	ENST00000454935.1	+	0	398																											acaccgtctcaaaaaaaaaaa	0.443													2	4	---	---	---	---					
RP11-539I5.1	0	broad.mit.edu	37	10	118597935	118597936	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr10:118597935_118597936insG	ENST00000453491.1	-	0	136				RP11-539I5.1_ENST00000434227.1_RNA																							ATATTTCTGGAGGGGGGGAAAA	0.480													3	5	---	---	---	---					
FAM160A2	84067	broad.mit.edu	37	11	6240282	6240283	+	Splice_Site	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:6240282_6240283insG	ENST00000265978.4	-	7	1550		c.e7-2		FAM160A2_ENST00000449352.2_Splice_Site|FAM160A2_ENST00000524416.1_Splice_Site	NM_001098794.1|NM_032127.3	NP_001092264.1|NP_115503.2	Q8N612	F16A2_HUMAN	family with sequence similarity 160, member A2						early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			NS(1)|endometrium(3)|kidney(2)|large_intestine(7)|liver(1)|lung(14)|ovary(2)|prostate(4)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	42						CATGCAGAGCTGGGGGGGTGGA	0.604													8	51	---	---	---	---					
CASC23	103581031	broad.mit.edu	37	11	8033121	8033122	+	RNA	INS	-	-	A			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:8033121_8033122insA	ENST00000534076.1	-	0	1265_1266																											aggaggacaagaaaaaaaaagg	0.446													2	4	---	---	---	---					
RP11-179A10.1	0	broad.mit.edu	37	11	11157070	11157071	+	RNA	DEL	AA	AA	-	rs148196066		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:11157070_11157071delAA	ENST00000525758.1	+	0	108																											CATTAAAAGCaaaaaaaaaaaa	0.396													2	4	---	---	---	---					
RP11-98J9.2	0	broad.mit.edu	37	11	13886058	13886058	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:13886058delT	ENST00000530492.1	-	0	78				RP11-98J9.3_ENST00000525381.1_lincRNA																							ACCTACACCCTTTTTTGGCCT	0.493													2	4	---	---	---	---					
RP11-266A24.1	0	broad.mit.edu	37	11	23212707	23212708	+	RNA	DEL	AT	AT	-	rs141820314		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:23212707_23212708delAT	ENST00000533591.1	+	0	391																											agcatctcacatagccaTATAT	0.376													3	6	---	---	---	---					
RP11-266A24.1	0	broad.mit.edu	37	11	23223821	23223822	+	RNA	INS	-	-	CTC	rs72104931	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:23223821_23223822insCTC	ENST00000533591.1	+	0	521																											agaagtgcctactcctccctga	0.629													3	4	---	---	---	---					
RP11-587D21.4	0	broad.mit.edu	37	11	27816481	27816482	+	RNA	INS	-	-	T	rs72209031	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:27816481_27816482insT	ENST00000530663.1	-	0	147																											tctcaggtagctttactcatgg	0.431													2	4	---	---	---	---					
RP11-466I1.1	0	broad.mit.edu	37	11	29188529	29188529	+	RNA	DEL	T	T	-	rs143593377		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:29188529delT	ENST00000530960.1	+	0	184																											CTTTCACCACTTTTTTTTTCA	0.333													6	1	---	---	---	---					
RP11-466I1.1	0	broad.mit.edu	37	11	29234726	29234727	+	RNA	INS	-	-	A	rs118177222	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:29234726_29234727insA	ENST00000530960.1	+	0	295																											ctcactatcacaaaaacagcat	0.465													2	4	---	---	---	---					
CSTF3-AS1	338739	broad.mit.edu	37	11	33187411	33187412	+	RNA	DEL	AC	AC	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:33187411_33187412delAC	ENST00000500025.2	+	0	94				CSTF3-AS1_ENST00000531870.1_RNA	NR_034027.1																						ttttttaAAAACACACACACAC	0.356													2	4	---	---	---	---					
RP11-124G5.3	0	broad.mit.edu	37	11	41567730	41567730	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:41567730delT	ENST00000526978.1	-	0	519																											tgaaaagaaatgaacaaagcc	0.333													2	4	---	---	---	---					
RP11-124G5.3	0	broad.mit.edu	37	11	41663037	41663038	+	RNA	INS	-	-	GGGTC	rs142349053	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:41663037_41663038insGGGTC	ENST00000526978.1	-	0	149																											gttcttgtgctgggtctttctc	0.401													2	4	---	---	---	---					
RP11-882G5.1	0	broad.mit.edu	37	11	97128986	97128989	+	RNA	DEL	AACA	AACA	-	rs71899772		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:97128986_97128989delAACA	ENST00000529088.1	-	0	357																											gcaagactccaacaaacaaacaaa	0.382													3	3	---	---	---	---					
RP11-839D17.3	0	broad.mit.edu	37	11	113175197	113175201	+	RNA	DEL	AAGTA	AAGTA	-	rs66463343		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:113175197_113175201delAAGTA	ENST00000526487.1	-	0	95				RP11-839D17.3_ENST00000533504.1_RNA																							tagtcaagtgaagtagagaaatgaa	0.288													3	4	---	---	---	---					
TECTA	7007	broad.mit.edu	37	11	120976570	120976570	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:120976570delG	ENST00000392793.1	+	3	366	c.95delG	c.(94-96)tgfs	p.W32fs	TECTA_ENST00000264037.2_Frame_Shift_Del_p.W32fs			O75443	TECTA_HUMAN	tectorin alpha	32					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix			TECTA/TBCEL(2)	NS(1)|breast(9)|central_nervous_system(1)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(38)|liver(1)|lung(46)|ovary(3)|prostate(4)|skin(6)|upper_aerodigestive_tract(3)|urinary_tract(1)	135	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TATCCATTTTGGCAGAATGAC	0.478													8	94	---	---	---	---					
C11orf44	283171	broad.mit.edu	37	11	130542994	130542994	+	Frame_Shift_Del	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:130542994delA	ENST00000317019.2	+	1	144	c.121delA	c.(121-123)ggfs	p.R41fs		NM_001271983.1	NP_001258912.1			chromosome 11 open reading frame 44											central_nervous_system(1)	1						CTGTGAGCTCAGGTGGACTCA	0.602													2	4	---	---	---	---					
LOC100507431	100507431	broad.mit.edu	37	11	130730716	130730717	+	RNA	INS	-	-	AGGCCCC	rs66463260	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:130730716_130730717insAGGCCCC	ENST00000533812.2	-	0	946																											TAAACCCTGCTAGagaggtgcg	0.530													4	2	---	---	---	---					
AP002856.5	0	broad.mit.edu	37	11	131201054	131201054	+	RNA	DEL	T	T	-	rs57047174		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr11:131201054delT	ENST00000606885.1	+	0	146																											ccaaccagcatttagcagaga	0.468													4	3	---	---	---	---					
RP11-1038A11.3	0	broad.mit.edu	37	12	5463018	5463022	+	RNA	DEL	GAAAG	GAAAG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:5463018_5463022delGAAAG	ENST00000537192.1	+	0	219																											aaggaaagaagaaaggaaggaaggg	0.468													5	9	---	---	---	---					
RP11-1038A11.3	0	broad.mit.edu	37	12	5480919	5480920	+	RNA	INS	-	-	CT	rs140527263	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:5480919_5480920insCT	ENST00000537192.1	+	0	414																											acacacacacaAGCAGTATTTC	0.401													5	8	---	---	---	---					
RP11-273B20.3	0	broad.mit.edu	37	12	7338793	7338794	+	RNA	INS	-	-	G	rs140028876	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:7338793_7338794insG	ENST00000545794.1	-	0	279				RP11-273B20.3_ENST00000543061.1_RNA																							tcctgttgagaggggggactga	0.500													2	4	---	---	---	---					
RP11-272B17.1	0	broad.mit.edu	37	12	59797025	59797025	+	RNA	DEL	G	G	-	rs3215070		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:59797025delG	ENST00000547088.1	-	0	107																											CATTTATCTCGGGGGGCCAAG	0.458													7	3	---	---	---	---					
RP11-123O10.4	0	broad.mit.edu	37	12	67392201	67392202	+	RNA	INS	-	-	A	rs35980470		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:67392201_67392202insA	ENST00000535721.1	-	0	113																											acttttctgataaaaaaaAATA	0.327													5	4	---	---	---	---					
RP11-13A1.3	0	broad.mit.edu	37	12	89546977	89546977	+	RNA	DEL	A	A	-	rs78388942		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:89546977delA	ENST00000549278.1	-	0	144																											gtgaatgtgcaaaaaaaaaaa	0.418													3	5	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98563880	98563880	+	RNA	DEL	A	A	-	rs66514569		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:98563880delA	ENST00000548344.1	-	0	68																											caaatgggttaaaaaaaaatc	0.274													3	4	---	---	---	---					
RP11-110L15.2	0	broad.mit.edu	37	12	116322632	116322632	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:116322632delA	ENST00000546414.1	-	0	155																											ctcatctgtgaaaaagggcta	0.423													2	4	---	---	---	---					
RP11-148B3.2	0	broad.mit.edu	37	12	116813814	116813815	+	RNA	DEL	TG	TG	-	rs74205166		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:116813814_116813815delTG	ENST00000548506.1	+	0	74																											tgagtatgcatgtgtgtgtgta	0.441													9	6	---	---	---	---					
FAM101A	144347	broad.mit.edu	37	12	124645178	124645179	+	RNA	INS	-	-	T	rs140134610	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr12:124645178_124645179insT	ENST00000540762.1	+	0	444																											AGGGCTGAGAGTTGGAACACAG	0.401													4	2	---	---	---	---					
RP11-16D22.2	0	broad.mit.edu	37	13	34943567	34943567	+	RNA	DEL	A	A	-	rs11318763		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:34943567delA	ENST00000605909.1	+	0	82																											ATAGTAAGTGATGGGGAGAGG	0.473													3	3	---	---	---	---					
RP11-478K15.1	0	broad.mit.edu	37	13	44703668	44703669	+	RNA	DEL	CA	CA	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:44703668_44703669delCA	ENST00000432331.1	-	0	134																											AGGTTAGGTGCACACACACACA	0.490													2	4	---	---	---	---					
NALCN-AS1	100885778	broad.mit.edu	37	13	101435362	101435363	+	RNA	INS	-	-	T	rs58863278	byFrequency	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:101435362_101435363insT	ENST00000457843.1	+	0	141					NR_047687.1																						AGTTGATTCCATTTTTCACTTT	0.391													2	4	---	---	---	---					
NALCN-AS1	100885778	broad.mit.edu	37	13	101592220	101592221	+	RNA	DEL	AC	AC	-	rs112658227		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:101592220_101592221delAC	ENST00000457843.1	+	0	141					NR_047687.1																						ctgtctcaaaacacacacacac	0.450													2	4	---	---	---	---					
NALCN-AS1	100885778	broad.mit.edu	37	13	101642705	101642705	+	RNA	DEL	C	C	-	rs142037122		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr13:101642705delC	ENST00000457843.1	+	0	141					NR_047687.1																						ggatgatcaacccttaccctt	0.438													4	2	---	---	---	---					
NOVA1-AS1	387977	broad.mit.edu	37	14	27192299	27192300	+	RNA	INS	-	-	AT	rs71935948	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:27192299_27192300insAT	ENST00000552826.1	+	0	93																											ACTGATTAAACAAATATTTTAA	0.252													3	3	---	---	---	---					
RP11-159L20.2	0	broad.mit.edu	37	14	31286685	31286685	+	RNA	DEL	C	C	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:31286685delC	ENST00000554665.1	-	0	208																											caacagccttcccctggcccc	0.428													2	4	---	---	---	---					
CTD-2307P3.1	0	broad.mit.edu	37	14	43017073	43017073	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:43017073delA	ENST00000557251.1	+	0	166																											gtgtaaaatcaaaacaggtta	0.383													2	4	---	---	---	---					
LINC00871	100506412	broad.mit.edu	37	14	46697135	46697135	+	RNA	DEL	A	A	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:46697135delA	ENST00000556886.1	+	0	232					NR_102701.1																						cttaaagtataaaaaaaGTCA	0.333													2	4	---	---	---	---					
RP11-2G1.1	0	broad.mit.edu	37	14	48952155	48952155	+	RNA	DEL	G	G	-	rs143664820	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:48952155delG	ENST00000555693.1	-	0	123																											aggatatccaggaatttaact	0.418													2	4	---	---	---	---					
LINC01269	103695436	broad.mit.edu	37	14	71177385	71177385	+	RNA	DEL	T	T	-	rs11321553		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:71177385delT	ENST00000553682.1	+	0	458																											tctttctttcttttctttctt	0.363													2	4	---	---	---	---					
RP11-61O1.1	0	broad.mit.edu	37	14	98664391	98664392	+	RNA	DEL	GT	GT	-	rs71462785		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr14:98664391_98664392delGT	ENST00000555776.1	-	0	121																											gagagaaagagtgtgtgtgtgt	0.431													5	4	---	---	---	---					
PWRN1	791114	broad.mit.edu	37	15	24827239	24827239	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:24827239delT	ENST00000568609.1	+	0	1230					NR_026646.1																						cacatataTAttttttttttc	0.398													2	4	---	---	---	---					
RP11-346D14.1	0	broad.mit.edu	37	15	38445454	38445454	+	RNA	DEL	C	C	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:38445454delC	ENST00000561320.1	-	0	222																											tgagaattttccacaattgat	0.328													2	4	---	---	---	---					
CTD-2184D3.5	0	broad.mit.edu	37	15	52358894	52358896	+	RNA	DEL	TAA	TAA	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:52358894_52358896delTAA	ENST00000558607.1	-	0	54																											CCAATTCTATTAATATCTGCCCA	0.389													3	4	---	---	---	---					
RP11-1129I3.1	0	broad.mit.edu	37	15	56869192	56869192	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:56869192delT	ENST00000562300.1	-	0	439																											ccagtcaatatttttttttag	0.343													2	4	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81777820	81777821	+	RNA	INS	-	-	T	rs71871538		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:81777820_81777821insT	ENST00000559211.1	+	0	98																											AGGTACTGttcttttttttttt	0.446													2	4	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81846739	81846739	+	RNA	DEL	T	T	-	rs72246976		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:81846739delT	ENST00000559211.1	+	0	98																											TCTAATTACCttttttttttt	0.488													2	4	---	---	---	---					
NR2F2-AS1	644192	broad.mit.edu	37	15	96688596	96688597	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr15:96688596_96688597insT	ENST00000560800.1	-	0	263																											TGGCCATGTAAttttttttttt	0.460													2	4	---	---	---	---					
CTA-481E9.3	0	broad.mit.edu	37	16	18141782	18141783	+	RNA	DEL	TG	TG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:18141782_18141783delTG	ENST00000563866.1	-	0	48				CTA-481E9.4_ENST00000567304.1_lincRNA																							tgcacacacatgtatatacata	0.297													6	2	---	---	---	---					
CTA-481E9.3	0	broad.mit.edu	37	16	18153100	18153101	+	RNA	DEL	TG	TG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:18153100_18153101delTG	ENST00000563866.1	-	0	48				CTA-481E9.4_ENST00000567304.1_lincRNA																							ggaggggttctgtgtgtgtatg	0.446													2	4	---	---	---	---					
CTA-481E9.3	0	broad.mit.edu	37	16	18185595	18185602	+	RNA	DEL	GAAAAATA	GAAAAATA	-	rs112849494		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:18185595_18185602delGAAAAATA	ENST00000563866.1	-	0	48				CTA-481E9.4_ENST00000567304.1_lincRNA																							tggatggatggaaaaatagatggatgga	0.399													3	3	---	---	---	---					
AC012322.1	0	broad.mit.edu	37	16	64315574	64315574	+	RNA	DEL	C	C	-	rs34968100		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:64315574delC	ENST00000561657.1	-	0	584																											ggtcactgaacatttagtcta	0.338													2	4	---	---	---	---					
RP11-467L24.1	0	broad.mit.edu	37	16	64470187	64470196	+	RNA	DEL	ACACACACAC	ACACACACAC	-	rs150621750		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:64470187_64470196delACACACACAC	ENST00000564046.1	+	0	116																											acacacacagacacacacacacacacacac	0.381													3	4	---	---	---	---					
RP11-256I9.3	0	broad.mit.edu	37	16	65276050	65276050	+	RNA	DEL	A	A	-	rs35338001		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:65276050delA	ENST00000562656.1	+	0	125																											CCCAGATGTGAAAAAAAAAAA	0.368													5	3	---	---	---	---					
LINC00922	283867	broad.mit.edu	37	16	65496427	65496428	+	RNA	INS	-	-	T	rs146829595	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:65496427_65496428insT	ENST00000569736.1	-	0	217					NR_027755.1																						ACTCAACAACCTTTCAATCTGG	0.406													3	6	---	---	---	---					
CLEC3A	10143	broad.mit.edu	37	16	78067872	78067873	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr16:78067872_78067873insT	ENST00000563114.1	-	0	41																											ctaatttttacttttgtagaga	0.530													2	4	---	---	---	---					
NF1	4763	broad.mit.edu	37	17	29576097	29576098	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:29576097_29576098insC	ENST00000358273.4	+	30	4453_4454	c.4070_4071insC	c.(4069-4071)tccfs	p.S1357fs	NF1_ENST00000356175.3_Frame_Shift_Ins_p.S1357fs	NM_001042492.2	NP_001035957.1	P21359	NF1_HUMAN	neurofibromin 1	1357	Ras-GAP.				actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(8)|p.?(4)	NF1/ACCN1(2)	autonomic_ganglia(12)|breast(11)|central_nervous_system(72)|cervix(6)|endometrium(12)|haematopoietic_and_lymphoid_tissue(59)|kidney(9)|large_intestine(39)|liver(1)|lung(80)|ovary(20)|pancreas(2)|prostate(2)|skin(8)|soft_tissue(249)|stomach(2)|thyroid(1)|upper_aerodigestive_tract(5)|urinary_tract(9)	599		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TCCTCAGAATTCCCCCCTCAAC	0.406			"""D, Mis, N, F, S, O"""		"""neurofibroma, glioma"""	"""neurofibroma, glioma"""			Neurofibromatosis, type 1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			8	167	---	---	---	---					
AC004231.2	0	broad.mit.edu	37	17	39125637	39125638	+	RNA	INS	-	-	A	rs137946356		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:39125637_39125638insA	ENST00000418393.1	+	0	385																											cttaaaataagaaaaaatgctc	0.292													2	4	---	---	---	---					
AC099850.1	0	broad.mit.edu	37	17	57186833	57186833	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:57186833delT	ENST00000451775.1	+	0	994																											TTTGTTGTTGTTTTTTTTTTG	0.343													2	4	---	---	---	---					
LINC01028	101928141	broad.mit.edu	37	17	68063664	68063665	+	RNA	INS	-	-	T	rs138969498	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:68063664_68063665insT	ENST00000586373.1	+	0	473_474				AC002539.1_ENST00000587325.1_RNA|AC002539.1_ENST00000435112.1_RNA																							gtgtgtgtgtgtgtgtTTCCAC	0.406													2	4	---	---	---	---					
CASC17	101928165	broad.mit.edu	37	17	69152637	69152638	+	RNA	DEL	AC	AC	-	rs35451822		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr17:69152637_69152638delAC	ENST00000569074.1	-	0	134																											GAAGTGTAATacacacacacac	0.376													3	3	---	---	---	---					
RP11-419J16.1	0	broad.mit.edu	37	18	10141933	10141934	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:10141933_10141934insC	ENST00000582470.1	+	0	162																											AAATTCCATTTCCCACCCGCCA	0.381													2	4	---	---	---	---					
LOC101927571	101927571	broad.mit.edu	37	18	20380266	20380266	+	RNA	DEL	G	G	-	rs5823361		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:20380266delG	ENST00000583086.1	-	0	84				RP11-739L10.1_ENST00000578831.1_RNA																							CTGGTTGTACGGGGAAGCAGT	0.438													4	3	---	---	---	---					
RP11-449D8.5	0	broad.mit.edu	37	18	22328645	22328646	+	RNA	INS	-	-	T	rs146299092	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:22328645_22328646insT	ENST00000582650.1	+	0	235																											tccttccttcctccttccctcc	0.485													2	4	---	---	---	---					
AQP4-AS1	147429	broad.mit.edu	37	18	24490288	24490295	+	RNA	DEL	ACCTCACT	ACCTCACT	-	rs11278668		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:24490288_24490295delACCTCACT	ENST00000568797.1	+	0	175				AQP4-AS1_ENST00000582605.1_RNA|AQP4-AS1_ENST00000579964.1_RNA|AQP4-AS1_ENST00000578701.1_RNA	NR_026908.1																						GAATGGGATAACCTCACTACCTGCACAA	0.466													4	6	---	---	---	---					
LINC00907	284260	broad.mit.edu	37	18	39845445	39845446	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:39845445_39845446insT	ENST00000593234.1	+	0	402					NR_046456.1																						AAATTTGTTGGTTTTTCTCAAA	0.347													2	4	---	---	---	---					
CTD-2008L17.1	0	broad.mit.edu	37	18	53647384	53647385	+	RNA	INS	-	-	AGAG	rs112340322		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:53647384_53647385insAGAG	ENST00000589440.1	+	0	405																											gagagacacacagagagagaga	0.391													3	4	---	---	---	---					
RP11-325K19.1	0	broad.mit.edu	37	18	58372880	58372881	+	RNA	INS	-	-	C			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:58372880_58372881insC	ENST00000591869.1	-	0	228																											TAGGGAGGCTGCCCCTACAACA	0.322													2	4	---	---	---	---					
RP11-325K19.1	0	broad.mit.edu	37	18	58554075	58554076	+	RNA	INS	-	-	GT	rs72201904	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:58554075_58554076insGT	ENST00000591869.1	-	0	38																											ATGCTTTTGGGgtgtgtgtgtg	0.460													2	4	---	---	---	---					
LOC284294	284294	broad.mit.edu	37	18	61978249	61978249	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr18:61978249delT	ENST00000589376.1	+	0	580					NR_033881.1																						AAAGTCATCCTTTTTTCAGAC	0.378													2	4	---	---	---	---					
SPACA6P	147650	broad.mit.edu	37	19	52205831	52205831	+	RNA	DEL	A	A	-	rs3835114		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr19:52205831delA	ENST00000573266.1	+	0	1281					NR_024330.1																						AGCATCGGGCAAGGGTTCTTC	0.567													6	10	---	---	---	---					
SNAP25-AS1	100131208	broad.mit.edu	37	20	10189497	10189497	+	RNA	DEL	T	T	-	rs79186400		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:10189497delT	ENST00000603542.1	-	0	518				SNAP25-AS1_ENST00000453544.1_RNA|SNAP25-AS1_ENST00000605592.1_RNA|SNAP25-AS1_ENST00000426491.1_RNA|SNAP25-AS1_ENST00000421143.2_RNA|SNAP25-AS1_ENST00000451151.1_RNA	NR_040710.1																						atatttcatcttttttttttt	0.303													4	2	---	---	---	---					
RP11-103J8.1	0	broad.mit.edu	37	20	10851446	10851447	+	RNA	INS	-	-	G			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:10851446_10851447insG	ENST00000605292.1	+	0	98																											TGTCAGAGTATGGGGGCCCTAA	0.401													2	4	---	---	---	---					
FAM182A	284800	broad.mit.edu	37	20	26061783	26061784	+	RNA	DEL	TT	TT	-	rs148692665	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:26061783_26061784delTT	ENST00000376398.2	+	0	819					NR_026713.1															breast(1)|endometrium(2)|kidney(1)	4						tctctctctctttctttctGAT	0.406													2	4	---	---	---	---					
RALGAPB	57148	broad.mit.edu	37	20	37203484	37203485	+	Frame_Shift_Ins	INS	-	-	C	rs138886522	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:37203484_37203485insC	ENST00000262879.6	+	30	4643_4644	c.4359_4360insC	c.(4357-4362)agccccfs	p.SP1453fs	RALGAPB_ENST00000397042.3_Frame_Shift_Ins_p.SP1450fs|RALGAPB_ENST00000397040.1_Frame_Shift_Ins_p.SP1453fs|RALGAPB_ENST00000490114.1_3'UTR|RALGAPB_ENST00000397038.1_Frame_Shift_Ins_p.SP1232fs			Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit (non-catalytic)	1453					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			breast(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(8)|lung(29)|ovary(1)|pancreas(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)	65						ACTCCTACAGTCCCCCCCATGT	0.431													9	132	---	---	---	---					
APCDD1L-AS1	149773	broad.mit.edu	37	20	57129732	57129733	+	RNA	DEL	AG	AG	-	rs113928501		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:57129732_57129733delAG	ENST00000427140.1	+	0	943					NR_034147.1																						catgagagaaagagggaagcag	0.545													2	4	---	---	---	---					
APCDD1L-AS1	149773	broad.mit.edu	37	20	57138009	57138010	+	RNA	INS	-	-	T	rs141446121		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:57138009_57138010insT	ENST00000427140.1	+	0	943					NR_034147.1																						tagtttggtacttttttTTTTT	0.510													3	3	---	---	---	---					
MIR646HG	284757	broad.mit.edu	37	20	58822848	58822851	+	RNA	DEL	TCTC	TCTC	-	rs112386449		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr20:58822848_58822851delTCTC	ENST00000432910.1	+	0	332					NR_046099.1																						tctctttccttctctctctctctc	0.456													4	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11057305	11057306	+	RNA	INS	-	-	G	rs79091593		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:11057305_11057306insG	ENST00000470054.1	-	0	487									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGGAGAAGATAGGAAAAAAAGC	0.347													9	19	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11079770	11079771	+	RNA	DEL	TG	TG	-	rs148543332		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:11079770_11079771delTG	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCCAAAACACTGTGCAGATGTA	0.406													9	8	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11084479	11084479	+	RNA	DEL	A	A	-	rs112755619		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:11084479delA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGGGGGTCATAAAACCAGAAA	0.413													3	5	---	---	---	---					
ABCC13	150000	broad.mit.edu	37	21	15695591	15695591	+	RNA	DEL	A	A	-	rs59029970		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:15695591delA	ENST00000482980.1	+	0	2812																											TTTCTCAGAGAAAAAAAAAAT	0.353													5	2	---	---	---	---					
MIR99AHG	388815	broad.mit.edu	37	21	17486552	17486553	+	RNA	INS	-	-	TT	rs35985049		TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:17486552_17486553insTT	ENST00000458468.1	+	0	312					NR_027790.1																						gaaactccccattttttttttt	0.525													2	4	---	---	---	---					
MIR99AHG	388815	broad.mit.edu	37	21	17742628	17742628	+	RNA	DEL	A	A	-	rs74383336	byFrequency	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:17742628delA	ENST00000458468.1	+	0	469					NR_027790.1																						CGTTGACTGTAAAAACAAACA	0.418													2	4	---	---	---	---					
AF131217.1	0	broad.mit.edu	37	21	29829178	29829178	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr21:29829178delT	ENST00000433310.1	-	0	456																											cagtaatagcttaaagctcaa	0.388													2	4	---	---	---	---					
GGT3P	2679	broad.mit.edu	37	22	18787487	18787487	+	RNA	DEL	T	T	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr22:18787487delT	ENST00000412448.1	-	0	51																											agtttggggctttttttttta	0.353													3	3	---	---	---	---					
MIATNB	102724827	broad.mit.edu	37	22	27089241	27089242	+	RNA	INS	-	-	T	rs142787587	by1000genomes	TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr22:27089241_27089242insT	ENST00000437071.1	+	0	183																											tcgcaaatgtCTAAGACTcttc	0.446													2	4	---	---	---	---					
LINC01422	101929539	broad.mit.edu	37	22	27307714	27307714	+	RNA	DEL	G	G	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chr22:27307714delG	ENST00000438113.1	+	0	282																											gtggaacccaggggaggatcc	0.468													2	4	---	---	---	---					
MID1	4281	broad.mit.edu	37	X	11040212	11040212	+	RNA	DEL	G	G	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:11040212delG	ENST00000433747.2	-	0	423																											aatttggcatgttttgcagtg	0.418													3	5	---	---	---	---					
RP1-30E17.2	0	broad.mit.edu	37	X	127680438	127680439	+	RNA	INS	-	-	T			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:127680438_127680439insT	ENST00000449485.1	-	0	158																											gttccattgtatttttttttcc	0.376													2	4	---	---	---	---					
LINC01201	104266960	broad.mit.edu	37	X	130150515	130150516	+	RNA	DEL	AG	AG	-			TCGA-17-Z009-01A-01W-0746-08	TCGA-17-Z009-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8c5a3460-c1fa-4b7b-9b31-11f9c7b03255	799f2afe-c35a-453d-8f75-15a01883196b	g.chrX:130150515_130150516delAG	ENST00000451431.1	-	0	134				RP1-23K20.2_ENST00000412420.1_RNA																							cacatggcgcagagagagagag	0.465													3	4	---	---	---	---