Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TCEA3	6920	hgsc.bcm.edu	hg19	1	23720511	23720511	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TCEA3	NM_003196	exon8	c.T680G	p.L227R	CTCTTGAGCTCTT	.	66.0	27.0	78.0	0.0	.	20	.	.	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78429310	78429310	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.,1	FUBP1	NM_003902	exon13	c.G1132T	p.E378X	TAAATTCCTGTAG	.	324.0	128.0	281.0	0.0	.	112	.	.	Atlas-SNP
PDZK1	5174	hgsc.bcm.edu	hg19	1	145747212	145747212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PDZK1	NM_002614	exon3	c.A169G	p.R57G	GTTCTTAGGATCA	.	217.0	87.0	163.0	0.0	.	15	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	hg19	1	152192560	152192560	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HRNR	NM_001009931	exon3	c.C1545A	p.S515S	ATAGCTGGAAGAT	.	107.0	45.0	89.0	0.0	.	403	.	.	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	hg19	1	152192561	152192561	+	Missense_Mutation	SNP	G	G	T	rs146581615	alternate_allele	TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HRNR	NM_001009931	exon3	c.C1544A	p.S515Y	TAGCTGGAAGATG	.	106.0	46.0	89.0	0.0	.	403	.	G|1.000;A|0.000	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152327802	152327802	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FLG2	NM_001014342	exon3	c.T2460A	p.F820L	TTGTCCAAAGCCA	.	162.0	82.0	109.0	0.0	.	431	.	.	Atlas-SNP
RUSC1-AS1	284618	hgsc.bcm.edu	hg19	1	155290828	155290828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	.	NM_001039517	exon2	c.G452T	p.R151L	TGGGCACGAGGGG	.	295.0	92.0	194.0	0.0	.	.	.	.	Atlas-SNP
GON4L	54856	hgsc.bcm.edu	hg19	1	155720493	155720493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GON4L	NM_001037533	exon32	c.T6605G	p.L2202R	TGGAAGAGCTGCA	.	367.0	61.0	219.0	0.0	.	392	.	.	Atlas-SNP
CRP	1401	hgsc.bcm.edu	hg19	1	159683527	159683527	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CRP	NM_000567	exon2	c.C463T	p.Q155X	GCTCCTGCCCCAA	.	149.0	44.0	79.0	0.0	.	49	.	.	Atlas-SNP
PRRX1	5396	hgsc.bcm.edu	hg19	1	170705233	170705233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PRRX1	NM_022716	exon4	c.C644T	p.A215V	GCCCTGCACAGGG	.	547.0	88.0	336.0	0.0	.	81	.	.	Atlas-SNP
RNPEP	6051	hgsc.bcm.edu	hg19	1	201958548	201958548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	RNPEP	NM_020216	exon3	c.C626A	p.T209N	CTAGCACCTGGGA	.	231.0	43.0	131.0	0.0	.	39	.	.	Atlas-SNP
MYBPH	4608	hgsc.bcm.edu	hg19	1	203144856	203144856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MYBPH	NM_004997	exon1	c.C28T	p.P10S	AGGCAGGGCCCTC	.	109.0	14.0	62.0	0.0	.	41	.	.	Atlas-SNP
C1orf116	79098	hgsc.bcm.edu	hg19	1	207196069	207196069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	C1orf116	NM_023938	exon4	c.G1040A	p.R347H	TCTTTACGTGCTT	.	104.0	28.0	47.0	0.0	.	64	.	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	hg19	1	238050802	238050802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZP4	NM_021186	exon5	c.T613C	p.S205P	GTGGCGAGGTCAC	.	305.0	44.0	187.0	0.0	.	161	.	.	Atlas-SNP
RGS7	6000	hgsc.bcm.edu	hg19	1	241094018	241094018	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	RGS7,NS,carcinoma,0,1	RGS7	NM_002924	exon6	c.T384A	p.Y128X	CTGACCATAATCT	.	451.0	131.0	274.0	0.0	.	308	.	.	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	hg19	1	248224067	248224067	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	OR2L3	NM_001004687	exon1	c.C84T	p.I28I	CTTCATCCTCATT	.	237.0	72.0	112.0	0.0	.	97	.	.	Atlas-SNP
OR2T2	401992	hgsc.bcm.edu	hg19	1	248616329	248616329	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	OR2T2	NM_001004136	exon1	c.C231T	p.I77I	CTGTATCACTGTC	.	1360.0	94.0	873.0	0.0	.	73	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15427254	15427254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	NBAS	NM_015909	exon42	c.G5081A	p.S1694N	GAGACACTGTAAC	.	149.0	75.0	113.0	0.0	.	246	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28761188	28761188	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PLB1	NM_001170585	exon10	c.T591C	p.N197N	ACAGAATGGGCTT	.	46.0	18.0	41.0	0.0	.	255	.	.	Atlas-SNP
PLEKHH2	130271	hgsc.bcm.edu	hg19	2	43927267	43927267	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	PLEKHH2,NS,carcinoma,0,1	PLEKHH2	NM_172069	exon8	c.T1170C	p.F390F	AAAATTTCAATCC	.	176.0	78.0	136.0	0.0	.	156	.	.	Atlas-SNP
PLEK	5341	hgsc.bcm.edu	hg19	2	68622843	68622843	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PLEK	NM_002664	exon9	c.G948A	p.E316E	TTTTGAGATCATC	.	242.0	50.0	172.0	0.0	.	64	.	.	Atlas-SNP
ATP6V1B1	525	hgsc.bcm.edu	hg19	2	71190004	71190004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ATP6V1B1	NM_001692	exon9	c.A883C	p.S295R	GACATGAGTTCCT	.	63.0	28.0	45.0	0.0	.	66	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179422457	179422457	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TTN	NM_001267550	exon328	c.C87624A	p.Y29208X	GAATTGGTATTCT	.	67.0	49.0	116.0	0.0	.	18412	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222321452	222321452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	EPHA4	NM_004438	exon7	c.C1484A	p.A495D	TTCCTGGCAGCTG	.	134.0	51.0	106.0	0.0	.	263	.	.	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	hg19	2	242007187	242007187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SNED1	NM_001080437	exon22	c.C3019T	p.P1007S	CCCCGCCCTGTGG	.	143.0	30.0	107.0	0.0	.	76	.	.	Atlas-SNP
SEMA3F	6405	hgsc.bcm.edu	hg19	3	50197097	50197097	+	Silent	SNP	C	C	A	rs1046953	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SEMA3F	NM_004186	exon2	c.C42A	p.T14T	ACTGACCGGGGCC	.	37.0	18.0	48.0	0.0	.	62	.	C|0.626;T|0.374	Atlas-SNP
BBX	56987	hgsc.bcm.edu	hg19	3	107492029	107492029	+	Silent	SNP	A	A	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	BBX	NM_001142568	exon11	c.A1461T	p.I487I	CGTCATATATACC	.	374.0	87.0	382.0	0.0	.	156	.	.	Atlas-SNP
MYH15	22989	hgsc.bcm.edu	hg19	3	108133217	108133217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MYH15	NM_014981	exon31	c.G4067A	p.R1356Q	TGCTCTCGTAGAA	.	55.0	24.0	54.0	0.0	.	223	.	.	Atlas-SNP
HPS3	84343	hgsc.bcm.edu	hg19	3	148884845	148884845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HPS3	NM_032383	exon15	c.G2614C	p.D872H	TCATTTGACATAG	.	49.0	16.0	80.0	0.0	.	104	.	.	Atlas-SNP
KCNAB1	7881	hgsc.bcm.edu	hg19	3	156170702	156170702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	KCNAB1	NM_172160	exon3	c.T334C	p.F112L	GTGACATTTGGAG	.	102.0	59.0	117.0	0.0	.	176	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	169099207	169099207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MECOM	NM_004991	exon2	c.C143A	p.S48Y	GCAGGAGAGCATG	.	88.0	47.0	76.0	0.0	.	216	.	.	Atlas-SNP
GPR160	26996	hgsc.bcm.edu	hg19	3	169802764	169802764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GPR160	NM_014373	exon4	c.T1004C	p.I335T	TATCAATAATGAT	.	216.0	61.0	197.0	0.0	.	26	.	.	Atlas-SNP
PIK3CA	5290	hgsc.bcm.edu	hg19	3	178936092	178936092	+	Missense_Mutation	SNP	A	A	C	rs121913274	bycluster	TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	PIK3CA_ENST00000263967,NS,carcinoma,+1,211	PIK3CA	NM_006218	exon10	c.A1634C	p.E545A	TCACTGAGCAGGA	.	416.0	208.0	462.0	0.0	.	8460	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13589344	13589344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	.	NM_148894	exon16	c.C8332T	p.L2778F	AAGAGAGATAATG	.	365.0	103.0	440.0	1.0	.	.	.	.	Atlas-SNP
FBXW7	55294	hgsc.bcm.edu	hg19	4	153245454	153245454	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FBXW7	NM_033632	exon11	c.G1737A	p.G579G	CTGGTGCCCTGTT	.	154.0	28.0	150.0	0.0	.	2157	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90074291	90074291	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GPR98	NM_032119	exon63	c.G12714A	p.Q4238Q	GTTTCAGCTCACT	.	168.0	86.0	126.0	0.0	.	605	.	.	Atlas-SNP
PAM	5066	hgsc.bcm.edu	hg19	5	102326066	102326066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PAM	NM_138822	exon15	c.T1574C	p.L525P	ATAACCTGGTGAT	.	188.0	91.0	127.0	0.0	.	180	.	.	Atlas-SNP
FTMT	94033	hgsc.bcm.edu	hg19	5	121187669	121187669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FTMT	NM_177478	exon1	c.G11A	p.C4Y	TGTCCTGCTTCAG	.	35.0	15.0	37.0	0.0	.	71	.	.	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140604578	140604578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PCDHB14	NM_018934	exon1	c.G1501A	p.A501T	CCCCTCGCCTCCT	.	160.0	51.0	88.0	0.0	.	132	.	.	Atlas-SNP
PCDHB14	56122	hgsc.bcm.edu	hg19	5	140604579	140604579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PCDHB14	NM_018934	exon1	c.C1502A	p.A501D	CCCTCGCCTCCTT	.	161.0	52.0	87.0	0.0	.	132	.	.	Atlas-SNP
PCDHGB4	8641	hgsc.bcm.edu	hg19	5	140769171	140769171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PCDHGB4	NM_032098	exon1	c.G1720A	p.D574N	CTCTTCGATATGG	.	108.0	33.0	61.0	0.0	.	125	.	.	Atlas-SNP
IL12B	3593	hgsc.bcm.edu	hg19	5	158750101	158750101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	IL12B	NM_002187	exon3	c.G325A	p.D109N	TTCCATCTTCCTT	.	185.0	66.0	114.0	0.0	.	30	.	.	Atlas-SNP
IL12B	3593	hgsc.bcm.edu	hg19	5	158750231	158750231	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	IL12B	NM_002187	exon3	c.C195G	p.S65R	CTCACTGCTCTGG	.	154.0	39.0	107.0	0.0	.	30	.	.	Atlas-SNP
PRELID1	27166	hgsc.bcm.edu	hg19	5	176732966	176732966	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PRELID1	NM_013237	exon3	c.G413C	p.G138A	TATTTGGTGTCTC	.	89.0	27.0	51.0	0.0	.	10	.	.	Atlas-SNP
SCUBE3	222663	hgsc.bcm.edu	hg19	6	35196493	35196493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SCUBE3	NM_152753	exon3	c.C311T	p.A104V	ACCTGGCACATGA	.	142.0	24.0	128.0	0.0	.	99	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152560752	152560752	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SYNE1	NM_182961	exon108	c.G19983C	p.Q6661H	ATGGAACTGGGTT	.	109.0	58.0	109.0	0.0	.	3227	.	.	Atlas-SNP
SLC22A3	6581	hgsc.bcm.edu	hg19	6	160819023	160819023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	SLC22A3,colon,carcinoma,0,1	SLC22A3	NM_021977	exon2	c.T442A	p.C148S	CTTGTCTGTGTCA	.	69.0	19.0	68.0	0.0	.	58	.	.	Atlas-SNP
GNA12	2768	hgsc.bcm.edu	hg19	7	2771229	2771229	+	Silent	SNP	C	C	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GNA12	NM_007353	exon4	c.G732C	p.G244G	CGTGATCCCGTCG	.	119.0	5.0	87.0	0.0	.	35	.	.	Atlas-SNP
AUTS2	26053	hgsc.bcm.edu	hg19	7	70255042	70255042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	AUTS2	NM_015570	exon19	c.C2840T	p.P947L	GGACCCCGGTGGT	.	178.0	111.0	161.0	0.0	.	173	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99091247	99091247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZNF394	NM_032164	exon3	c.G1591A	p.G531R	TTTCCCCACATTC	.	224.0	73.0	170.0	0.0	.	48	.	.	Atlas-SNP
ACTL6B	51412	hgsc.bcm.edu	hg19	7	100247666	100247666	+	Silent	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ACTL6B	NM_016188	exon5	c.C462G	p.L154L	CGCGGTGAGCACA	.	41.0	27.0	38.0	0.0	.	47	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117431601	117431601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CTTNBP2	NM_033427	exon4	c.C1649A	p.P550Q	AGCCCTGGCTTTT	.	242.0	162.0	249.0	0.0	.	200	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117431602	117431602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CTTNBP2	NM_033427	exon4	c.C1648G	p.P550A	GCCCTGGCTTTTT	.	237.0	161.0	248.0	0.0	.	200	.	.	Atlas-SNP
AGBL3	340351	hgsc.bcm.edu	hg19	7	134819954	134819954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	AGBL3	NM_178563	exon17	c.C2704A	p.Q902K	GATGAGCAGGCCA	.	133.0	14.0	107.0	0.0	.	45	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55534746	55534746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	RP1	NM_006269	exon3	c.C685T	p.P229S	TTTAAACCAGGAA	.	110.0	48.0	90.0	0.0	.	429	.	.	Atlas-SNP
GDAP1	54332	hgsc.bcm.edu	hg19	8	75274160	75274160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GDAP1	NM_018972	exon4	c.G526A	p.E176K	CTTGCTGAAGAAA	.	105.0	22.0	99.0	0.0	.	36	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110420351	110420351	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PKHD1L1	NM_177531	exon18	c.A1887G	p.K629K	AACCAAAGGAAAA	.	108.0	21.0	119.0	0.0	.	522	.	.	Atlas-SNP
MELK	9833	hgsc.bcm.edu	hg19	9	36643018	36643018	+	Missense_Mutation	SNP	G	G	A	rs374744271		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MELK	NM_014791	exon11	c.G859A	p.V287I	GATTGCGTAACAG	.	444.0	180.0	390.0	0.0	.	74	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131329101	131329101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SPTAN1	NM_003127	exon2	c.C82T	p.R28C	TACCACCGCTTCA	.	177.0	76.0	153.0	0.0	.	266	.	.	Atlas-SNP
LARP4B	23185	hgsc.bcm.edu	hg19	10	860959	860959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	LARP4B	NM_015155	exon16	c.G1747A	p.E583K	AGGGCTCTCTGGA	.	56.0	10.0	51.0	0.0	.	110	.	.	Atlas-SNP
DDX50	79009	hgsc.bcm.edu	hg19	10	70706321	70706321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	DDX50	NM_024045	exon15	c.G2149T	p.G717C	CAAGATGGTAGAA	.	73.0	19.0	97.0	0.0	.	65	.	.	Atlas-SNP
MRPS16	51021	hgsc.bcm.edu	hg19	10	75010634	75010634	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MRPS16	NM_016065	exon3	c.A390G	p.T130T	TGTATCTGTAGCT	.	30.0	14.0	34.0	0.0	.	12	.	.	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	hg19	11	33682552	33682552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	.	NM_012194	exon19	c.G5260A	p.A1754T	CAGTGGGCAGATT	.	86.0	16.0	56.0	0.0	.	.	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6230347	6230347	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	VWF	NM_000552	exon3	c.G213A	p.S71S	AATAATCGAGAAG	.	95.0	35.0	72.0	0.0	.	338	.	.	Atlas-SNP
KRT6A	3853	hgsc.bcm.edu	hg19	12	52885513	52885513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	KRT6A	NM_005554	exon2	c.T548C	p.F183S	TCCAGGAACCGCA	.	128.0	23.0	88.0	0.0	.	89	.	.	Atlas-SNP
OR6C65	403282	hgsc.bcm.edu	hg19	12	55794617	55794617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	OR6C65	NM_001005518	exon1	c.T305C	p.L102S	TTTTTTTAATTCT	.	88.0	40.0	74.0	0.0	.	44	.	.	Atlas-SNP
METAP2	10988	hgsc.bcm.edu	hg19	12	95867968	95867968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	METAP2	NM_006838	exon1	c.G13A	p.E5K	GGTGTGGAGGAGG	.	196.0	80.0	186.0	0.0	.	28	.	.	Atlas-SNP
GRK1	6011	hgsc.bcm.edu	hg19	13	114322307	114322307	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GRK1	NM_002929	exon1	c.G606A	p.G202G	CTTCGGGGAGGTG	.	232.0	63.0	159.0	0.0	.	41	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45475303	45475303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FAM179B	NM_015091	exon5	c.G2737T	p.V913F	AAGCCTGTTCCTC	.	146.0	28.0	116.0	0.0	.	115	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45475307	45475307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FAM179B	NM_015091	exon5	c.C2741T	p.P914L	CTGTTCCTCCCAT	.	148.0	28.0	119.0	0.0	.	115	.	.	Atlas-SNP
PNMA1	9240	hgsc.bcm.edu	hg19	14	74180325	74180325	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PNMA1	NM_006029	exon1	c.G18A	p.L6L	GTCTTCCAACAGT	.	92.0	38.0	74.0	0.0	.	29	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105413228	105413228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	AHNAK2	NM_138420	exon7	c.G8560C	p.G2854R	GATCCCCTTGCAT	.	168.0	30.0	133.0	0.0	.	719	.	.	Atlas-SNP
TLN2	83660	hgsc.bcm.edu	hg19	15	62948248	62948248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	TLN2,NS,carcinoma,0,3	TLN2	NM_015059	exon5	c.C623T	p.S208L	TAGATTCGAGAGA	.	106.0	41.0	91.0	0.0	.	253	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	64048942	64048942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HERC1	NM_003922	exon5	c.A1227C	p.E409D	TCCAGCTTCAATC	.	57.0	22.0	32.0	0.0	.	624	.	.	Atlas-SNP
MAN2A2	4122	hgsc.bcm.edu	hg19	15	91448887	91448887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MAN2A2	NM_006122	exon3	c.G469T	p.D157Y	TCCTACGACCCGC	.	106.0	22.0	110.0	0.0	.	99	.	.	Atlas-SNP
C16orf11	146325	hgsc.bcm.edu	hg19	16	613785	613785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	C16orf11	NM_145270	exon2	c.C491T	p.P164L	GGAAGCCGGGGAT	.	70.0	18.0	65.0	0.0	.	27	.	.	Atlas-SNP
TBX6	6911	hgsc.bcm.edu	hg19	16	30100136	30100136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TBX6	NM_004608	exon5	c.T646G	p.Y216D	GTTGGTACTTGTG	.	151.0	62.0	97.0	0.0	.	29	.	.	Atlas-SNP
PHKB	5257	hgsc.bcm.edu	hg19	16	47699867	47699867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PHKB	NM_001031835	exon26	c.G2330A	p.R777H	TACGCCGTGCAGC	.	102.0	13.0	88.0	0.0	.	298	.	.	Atlas-SNP
MMP2	4313	hgsc.bcm.edu	hg19	16	55522498	55522498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MMP2	NM_004530	exon6	c.G876T	p.K292N	CTGCAAGTTTCCA	.	91.0	40.0	64.0	0.0	.	119	.	.	Atlas-SNP
SLC12A4	6560	hgsc.bcm.edu	hg19	16	67985897	67985897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	SLC12A4,bladder,carcinoma,0,1	SLC12A4	NM_001145962	exon7	c.G967T	p.D323Y	AGATGTCAAACTG	.	113.0	46.0	89.0	0.0	.	81	.	.	Atlas-SNP
HAS3	3038	hgsc.bcm.edu	hg19	16	69143870	69143870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HAS3	NM_138612	exon2	c.G572A	p.G191E	AGTGGGGAGGCAA	.	93.0	40.0	73.0	0.0	.	61	.	.	Atlas-SNP
ATAD5	79915	hgsc.bcm.edu	hg19	17	29187555	29187555	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ATAD5	NM_024857	exon10	c.G3061T	p.E1021X	AATCTGGAGAAGA	.	614.0	240.0	439.0	0.0	.	150	.	.	Atlas-SNP
COIL	8161	hgsc.bcm.edu	hg19	17	55027539	55027539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	COIL	NM_004645	exon2	c.C1064T	p.P355L	AGCCCTGGGCCTG	.	61.0	18.0	47.0	0.0	.	49	.	.	Atlas-SNP
TEX2	55852	hgsc.bcm.edu	hg19	17	62238222	62238222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TEX2	NM_018469	exon8	c.A2764G	p.T922A	GTTTGGTCAAATT	.	115.0	41.0	117.0	0.0	.	89	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65103749	65103749	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HELZ	NM_014877	exon31	c.G4777T	p.E1593X	CTAGTTCCCGTGT	.	187.0	84.0	163.0	0.0	.	160	.	.	Atlas-SNP
JMJD6	23210	hgsc.bcm.edu	hg19	17	74721921	74721921	+	Missense_Mutation	SNP	G	G	A	rs367636744	alternate_allele	TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	JMJD6	NM_001081461	exon2	c.C146T	p.A49V	GCATCTGCCCTTT	.	71.0	5.0	52.0	0.0	.	57	.	.	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	hg19	17	76087679	76087679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TNRC6C	NM_018996	exon15	c.A3961G	p.S1321G	AACCCTAGCAAGC	.	68.0	25.0	62.0	0.0	.	173	.	.	Atlas-SNP
EMILIN2	84034	hgsc.bcm.edu	hg19	18	2891712	2891712	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	EMILIN2	NM_032048	exon4	c.G1587A	p.G529G	GTCAGGGTCAGGA	.	96.0	26.0	82.0	0.0	.	97	.	.	Atlas-SNP
ANKRD12	23253	hgsc.bcm.edu	hg19	18	9258165	9258165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ANKRD12	NM_015208	exon9	c.G4900C	p.E1634Q	GAAAAAGAAAACA	.	92.0	46.0	80.0	0.0	.	167	.	.	Atlas-SNP
FHOD3	80206	hgsc.bcm.edu	hg19	18	34326998	34326998	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	FHOD3,NS,carcinoma,0,1	FHOD3	NM_025135	exon21	c.G3607T	p.E1203X	AAACATGAAATGA	.	190.0	40.0	217.0	0.0	.	210	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44140291	44140291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	LOXHD1	NM_144612	exon19	c.A2816G	p.K939R	TTCTTCTTCCTCT	.	272.0	15.0	283.0	0.0	.	367	.	.	Atlas-SNP
SERPINB4	6318	hgsc.bcm.edu	hg19	18	61305147	61305147	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SERPINB4	NM_002974	exon8	c.A979T	p.K327X	GGACTTTAGATAC	.	107.0	56.0	92.0	0.0	.	89	.	.	Atlas-SNP
PCSK4	54760	hgsc.bcm.edu	hg19	19	1490287	1490287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PCSK4	NM_017573	exon1	c.G59A	p.R20H	CGGGGGCGGACAA	.	34.0	14.0	48.0	0.0	.	44	.	.	Atlas-SNP
GATAD2A	54815	hgsc.bcm.edu	hg19	19	19607000	19607000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	GATAD2A	NM_017660	exon7	c.A896G	p.N299S	TTCCCAACACCAG	.	56.0	19.0	54.0	0.0	.	81	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22941385	22941385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZNF99	NM_001080409	exon4	c.A1326T	p.K442N	CTTATGTTTTCTA	.	73.0	32.0	58.0	0.0	.	273	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23545201	23545201	+	Missense_Mutation	SNP	G	G	A	rs377229432		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZNF91	NM_003430	exon4	c.C580T	p.R194C	GTAAACGGATGCA	.	159.0	8.0	119.0	0.0	.	349	.	.	Atlas-SNP
SSTR4	6754	hgsc.bcm.edu	hg19	20	23017238	23017238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	SSTR4,NS,carcinoma,0,1	SSTR4	NM_001052	exon1	c.C1118A	p.P373Q	TGCAACCAGAACC	.	66.0	13.0	61.0	0.0	.	83	.	.	Atlas-SNP
CABLES2	81928	hgsc.bcm.edu	hg19	20	60967986	60967986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CABLES2	NM_031215	exon7	c.C974T	p.A325V	TACGACGCAAAGA	.	73.0	4.0	52.0	0.0	.	30	.	.	Atlas-SNP
SEC14L2	23541	hgsc.bcm.edu	hg19	22	30803523	30803523	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SEC14L2	NM_012429	exon5	c.G354A	p.Q118Q	CAAACAGGACCTG	.	90.0	33.0	58.0	0.0	.	24	.	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	hg19	22	32627060	32627060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SLC5A4	NM_014227	exon10	c.A1024G	p.M342V	CTACCATATCTGG	.	102.0	17.0	82.0	0.0	.	82	.	.	Atlas-SNP
SREBF2	6721	hgsc.bcm.edu	hg19	22	42266958	42266958	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SREBF2	NM_004599	exon4	c.C786T	p.G262G	AGATGGCAGCCCT	.	113.0	44.0	98.0	0.0	.	99	.	.	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	hg19	X	41022048	41022048	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	USP9X	NM_001039591	exon15	c.G1903T	p.E635X	GACCATGAAGATT	.	237.0	111.0	210.0	0.0	.	385	.	.	Atlas-SNP
CASK	8573	hgsc.bcm.edu	hg19	X	41394032	41394032	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CASK	NM_003688	exon24	c.T2229C	p.H743H	AACACCATGTGCG	.	115.0	55.0	88.0	0.0	.	93	.	.	Atlas-SNP
TSPYL2	64061	hgsc.bcm.edu	hg19	X	53115089	53115089	+	Silent	SNP	T	T	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TSPYL2	NM_022117	exon6	c.T1515A	p.T505T	AACCACTGACAAC	.	203.0	46.0	182.0	0.0	.	53	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54955093	54955093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TRO	NM_016157	exon12	c.G1936A	p.E646K	GAGATGGAAGTCC	.	261.0	123.0	222.0	0.0	.	246	.	.	Atlas-SNP
ZXDB	158586	hgsc.bcm.edu	hg19	X	57618959	57618959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZXDB	NM_007157	exon1	c.G478T	p.G160C	GCCCCCGGCCCCG	.	172.0	67.0	107.0	0.0	.	51	.	.	Atlas-SNP
ZXDB	158586	hgsc.bcm.edu	hg19	X	57618960	57618960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZXDB	NM_007157	exon1	c.G479T	p.G160V	CCCCCGGCCCCGC	.	176.0	64.0	108.0	0.0	.	51	.	.	Atlas-SNP
HDX	139324	hgsc.bcm.edu	hg19	X	83723670	83723670	+	Missense_Mutation	SNP	A	A	G	rs138694491	alternate_allele	TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	HDX	NM_144657	exon3	c.T1061C	p.M354T	TTCACCATTTGTG	.	181.0	18.0	164.0	0.0	.	124	.	A|1.000;T|0.000	Atlas-SNP
LUZP4	51213	hgsc.bcm.edu	hg19	X	114524334	114524334	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	LUZP4	NM_016383	exon1	c.G9A	p.S3S	GGCTTCGTTTCGG	.	141.0	56.0	108.0	0.0	.	51	.	.	Atlas-SNP
IL13RA1	3597	hgsc.bcm.edu	hg19	X	117895239	117895239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	IL13RA1	NM_001560	exon6	c.A815G	p.H272R	AGACACATAATGT	.	188.0	45.0	158.0	0.0	.	41	.	.	Atlas-SNP
ZCCHC12	170261	hgsc.bcm.edu	hg19	X	117959257	117959257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ZCCHC12	NM_173798	exon4	c.C50A	p.P17H	ATGCACCCTTGCC	.	174.0	68.0	160.0	0.0	.	60	.	.	Atlas-SNP
MAGEA1	4100	hgsc.bcm.edu	hg19	X	152482654	152482654	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	MAGEA1	NM_004988	exon3	c.C357T	p.A119A	CTCCCTGGCTCGA	.	363.0	153.0	302.0	0.0	.	57	.	.	Atlas-SNP
ND4L	0	hgsc.bcm.edu	hg19	MT	10724	10724	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	.	ENST00000361335	exon1	c.T255C	p.Y85Y	CACATATGGCCTA	.	22.0	7.0	21.0	0.0	.	.	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14439	14439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	.	ENST00000361681	exon1	c.C235T	p.P79S	CCTCAGGATACTC	.	54.0	10.0	47.0	0.0	.	.	.	.	Atlas-SNP
FUBP1	8880	hgsc.bcm.edu	hg19	1	78422295	78422295	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FUBP1	NM_003902	exon17	c.1668delT	p.P556fs	.	.	84.0	37.0	81.0	0.0	.	112	.	.	Atlas-INDEL
JPH1	56704	hgsc.bcm.edu	hg19	8	75233276	75233276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	JPH1	NM_020647	exon1	c.248delG	p.R83fs	.	.	191.0	71.0	156.0	0.0	.	77	.	.	Atlas-INDEL
CCDC147	159686	hgsc.bcm.edu	hg19	10	106153114	106153120	+	Frame_Shift_Del	DEL	TTAAAGA	TTAAAGA	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	TTAAAGA	TTAAAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	CCDC147	NM_001008723	exon11	c.1554_1560del	p.518_520del	.	.	174.0	29.0	198.0	0.0	.	137	.	.	Atlas-INDEL
SFMBT1	51460	hgsc.bcm.edu	hg19	3	52966136	52966137	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	SFMBT1	NM_016329	exon6	c.642_643insC	p.P214fs	.	.	84.0	39.0	82.0	0.0	.	53	.	.	Atlas-INDEL
RXFP3	51289	hgsc.bcm.edu	hg19	5	33937613	33937613	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	RXFP3	NM_016568	exon1	c.767delT	p.L256fs	.	.	117.0	50.0	109.0	0.0	.	114	.	.	Atlas-INDEL
ACVR2A	92	hgsc.bcm.edu	hg19	2	148684705	148684706	+	In_Frame_Ins	INS	-	-	AGGTTA	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	ACVR2A	NM_001616	exon11	c.1404_1405insAGGTTA	p.A468delinsARL	.	.	67.0	26.0	142.0	0.0	.	125	.	.	Atlas-INDEL
FAM175B	23172	hgsc.bcm.edu	hg19	10	126523308	126523319	+	In_Frame_Del	DEL	CTTCCAATTATG	CTTCCAATTATG	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	CTTCCAATTATG	CTTCCAATTATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	FAM175B	NM_032182	exon9	c.1015_1026del	p.339_342del	.	.	125.0	30.0	115.0	0.0	.	39	.	.	Atlas-INDEL
KCNJ8	3764	hgsc.bcm.edu	hg19	12	21918723	21918740	+	In_Frame_Del	DEL	AGAATTGTTCCTTCGGAT	AGAATTGTTCCTTCGGAT	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	AGAATTGTTCCTTCGGAT	AGAATTGTTCCTTCGGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	KCNJ8	NM_004982	exon3	c.1193_1210del	p.398_404del	.	.	115.0	21.0	105.0	0.0	.	59	.	.	Atlas-INDEL
IFITM3	10410	hgsc.bcm.edu	hg19	11	320637	320637	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	IFITM3	NM_021034	exon1	c.178delT	p.W60fs	.	.	78.0	28.0	53.0	0.0	.	132	.	.	Atlas-INDEL
C19orf48	84798	hgsc.bcm.edu	hg19	19	51301638	51301638	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	C19orf48	NM_199249	exon5	c.69delA	p.P23fs	.	.	72.0	21.0	51.0	0.0	.	11	.	.	Atlas-INDEL
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24788418	24788441	+	In_Frame_Del	DEL	CAGCAGCAGCCACAGCCGCAGCCG	CAGCAGCAGCCACAGCCGCAGCCG	-	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	CAGCAGCAGCCACAGCCGCAGCCG	CAGCAGCAGCCACAGCCGCAGCCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	TNRC6A	NM_014494	exon5	c.327_350del	p.109_117del	.	.	88.0	33.0	62.0	0.0	.	171	.	.	Atlas-INDEL
PLEKHH3	79990	hgsc.bcm.edu	hg19	17	40824222	40824223	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ZS-A9CE-01A-11D-A36X-10	TCGA-ZS-A9CE-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	c5e17d28-a154-47f9-a251-47f16437c16f	0e32e986-dd29-487a-85a2-5df371bbb9a4	.	PLEKHH3	NM_024927	exon7	c.958_959insC	p.G320fs	.	.	74.0	29.0	65.0	0.0	.	49	.	.	Atlas-INDEL