Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm NPHP4 261734 hgsc.bcm.edu hg19 1 5927958 5927958 + Splice_Site SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NPHP4 NM_015102 exon25 c.3316-2A>C . AAGACCTGTGAGG . 67.0 35.0 99.0 0.0 . 119 . . Atlas-SNP ERRFI1 54206 hgsc.bcm.edu hg19 1 8073423 8073423 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ERRFI1 NM_018948 exon4 c.G1236T p.R412S TGCTTCCCTAAAA . 129.0 47.0 158.0 0.0 . 42 . . Atlas-SNP PADI1 29943 hgsc.bcm.edu hg19 1 17555182 17555182 + Nonsense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PADI1 NM_013358 exon7 c.G715T p.E239X GAAGTTGAGCGAC . 71.0 19.0 109.0 0.0 . 77 . . Atlas-SNP LRRC41 10489 hgsc.bcm.edu hg19 1 46751145 46751145 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . LRRC41 NM_006369 exon4 c.A1384G p.I462V TGGAGATGCTGCG . 50.0 25.0 74.0 0.0 . 74 . . Atlas-SNP OLFM3 118427 hgsc.bcm.edu hg19 1 102271685 102271685 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . OLFM3 NM_058170 exon5 c.A646G p.T216A ATCGGGTTCCAGA . 103.0 47.0 95.0 0.0 . 178 . . Atlas-SNP LRIF1 55791 hgsc.bcm.edu hg19 1 111494486 111494486 + Silent SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . LRIF1 NM_018372 exon2 c.C1020A p.I340I AGGATCGATGGTA . 46.0 22.0 68.0 0.0 . 65 . . Atlas-SNP BCL9 607 hgsc.bcm.edu hg19 1 147092530 147092530 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . BCL9 NM_004326 exon8 c.T2569C p.S857P GTGCATTCCCCAG . 69.0 21.0 39.0 0.0 . 150 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152083351 152083351 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TCHH NM_007113 exon3 c.G2342T p.R781L CTCTGACGGCCCC . 96.0 27.0 65.0 0.0 . 275 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152281292 152281292 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FLG NM_002016 exon3 c.C6070T p.H2024Y GTCCATGCCCAAT . 145.0 16.0 102.0 0.0 . 900 . . Atlas-SNP LCE2D 353141 hgsc.bcm.edu hg19 1 152636635 152636635 + Silent SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . LCE2D NM_178430 exon2 c.C54A p.P18P TCCTCCCAAGTGT . 275.0 59.0 207.0 0.0 . 26 . . Atlas-SNP PYGO2 90780 hgsc.bcm.edu hg19 1 154931793 154931793 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PYGO2 NM_138300 exon3 c.A683T p.Q228L GGTCTCTGGAGAG . 183.0 42.0 134.0 0.0 . 32 . . Atlas-SNP RUSC1 23623 hgsc.bcm.edu hg19 1 155292300 155292300 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . RUSC1 NM_001105203 exon2 c.T736C p.W246R GCTGAATGGAAAA . 349.0 92.0 252.0 0.0 . 85 . . Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177199111 177199111 + Silent SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FAM5B NM_021165 exon2 c.T99A p.A33A GTTGGCTGTCTCA . 301.0 93.0 222.0 0.0 . 191 . . Atlas-SNP TEX35 84066 hgsc.bcm.edu hg19 1 178485749 178485749 + Splice_Site SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 C1orf49_ENST00000367643,NS,carcinoma,0,2 TEX35 NM_001170724 exon5 c.217-1G>T . TTGTTAGATAAAG . 170.0 43.0 114.0 0.0 . 15 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182517465 182517465 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 RGSL1_ENST00000294854,colon,carcinoma,0,2 RGSL1 NM_001137669 exon16 c.G2683A p.V895I GATCTGGTCAGTT . 127.0 30.0 96.0 0.0 . 111 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186329450 186329450 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TPR NM_003292 exon11 c.A1146G p.A382A AGCTGCTGCAGTA . 592.0 66.0 374.0 0.0 . 441 . . Atlas-SNP RGS1 5996 hgsc.bcm.edu hg19 1 192548402 192548402 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . RGS1 NM_002922 exon5 c.G580T p.D194Y AAATCAGATATTT . 549.0 252.0 340.0 1.0 . 75 . . Atlas-SNP KIF14 9928 hgsc.bcm.edu hg19 1 200550340 200550340 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . KIF14 NM_014875 exon20 c.T3324C p.Y1108Y AAAAACATAGTAT . 335.0 67.0 190.0 0.0 . 156 . . Atlas-SNP PFKFB2 5208 hgsc.bcm.edu hg19 1 207245694 207245694 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PFKFB2 NM_006212 exon15 c.A1496T p.D499V CCCAGGACATGCA . 237.0 60.0 140.0 0.0 . 70 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207643282 207643282 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CR2 NM_001006658 exon6 c.C1060A p.P354T CCACATCCCCAGA . 216.0 27.0 110.0 0.0 . 164 . . Atlas-SNP ZP4 57829 hgsc.bcm.edu hg19 1 238048573 238048573 + Silent SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ZP4 NM_021186 exon9 c.T1203A p.P401P CTGGACAGGGATC . 274.0 129.0 171.0 0.0 . 161 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240601442 240601442 + Silent SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FMN2 NM_020066 exon16 c.C4992A p.I1664I CAGTATCTGGCAT . 142.0 39.0 85.0 0.0 . 451 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926174 1926174 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MYT1L NM_015025 exon10 c.C1367T p.A456V CTCCCAGCTTCCA . 105.0 43.0 86.0 0.0 . 241 . . Atlas-SNP KIDINS220 57498 hgsc.bcm.edu hg19 2 8919137 8919137 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 KIDINS220,NS,carcinoma,0,1 KIDINS220 NM_020738 exon19 c.C2503A p.R835S TGTTGCGCATGTA . 82.0 30.0 67.0 0.0 . 136 . . Atlas-SNP DTNB 1838 hgsc.bcm.edu hg19 2 25819006 25819006 + Silent SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DTNB NM_021907 exon6 c.G552A p.G184G AGATGGCCCTTCA . 146.0 25.0 143.0 0.0 . 43 . . Atlas-SNP EFEMP1 2202 hgsc.bcm.edu hg19 2 56098002 56098002 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . EFEMP1 NM_001039349 exon10 c.G1173T p.Q391H TATTGACTGGGGC . 152.0 48.0 119.0 0.0 . 81 . . Atlas-SNP ARHGEF4 50649 hgsc.bcm.edu hg19 2 131797621 131797621 + Silent SNP C C T rs150958124 alternate_allele TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 ARHGEF4_ENST00000392953,NS,carcinoma,0,2 ARHGEF4 NM_032995 exon7 c.C780T p.D260D GGATGACGACGCC . 165.0 7.0 127.0 1.0 . 89 . C|1.000;A|0.000 Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152473927 152473927 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NEB NM_001271208 exon75 c.A11132T p.D3711V GGTGTATCAGGCA . 51.0 17.0 44.0 0.0 . 1697 . . Atlas-SNP NEB 4703 hgsc.bcm.edu hg19 2 152534508 152534508 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NEB NM_004543 exon33 c.A3449T p.K1150M GCTTTCTTAGCCG . 110.0 25.0 108.0 0.0 . 1697 . . Atlas-SNP COBLL1 22837 hgsc.bcm.edu hg19 2 165557052 165557052 + Missense_Mutation SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . COBLL1 NM_014900 exon10 c.A1557C p.E519D TTTAGTTTCTTGT . 102.0 22.0 111.0 0.0 . 122 . . Atlas-SNP PLCL1 5334 hgsc.bcm.edu hg19 2 198953586 198953586 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PLCL1 NM_006226 exon3 c.C2720A p.A907E AGAATGCAATCGT . 66.0 18.0 77.0 0.0 . 358 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238287845 238287845 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . COL6A3 NM_004369 exon6 c.T1931C p.L644S CCATCCAAAAGAA . 222.0 45.0 224.0 0.0 . 608 . . Atlas-SNP CCDC54 84692 hgsc.bcm.edu hg19 3 107097090 107097090 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CCDC54 NM_032600 exon1 c.C656A p.T219N TGAAAACTCTGAA . 251.0 130.0 325.0 0.0 . 56 . . Atlas-SNP HTR3C 170572 hgsc.bcm.edu hg19 3 183776324 183776324 + Silent SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . HTR3C NM_130770 exon6 c.C669A p.A223A CAAGGCCACCCCA . 147.0 41.0 194.0 0.0 . 65 . . Atlas-SNP TADA2B 93624 hgsc.bcm.edu hg19 4 7045509 7045509 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TADA2B NM_152293 exon1 c.G203A p.G68D CCGAGGGCGGCTG . 96.0 37.0 84.0 0.0 . 29 . . Atlas-SNP CPEB2 132864 hgsc.bcm.edu hg19 4 15004505 15004505 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CPEB2 NM_001177381 exon1 c.G208A p.G70S CCCCTCGGCGGCG . 5.0 5.0 1.0 0.0 . 77 . . Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39201126 39201126 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . WDR19 NM_025132 exon6 c.A435G p.G145G TTGTGGATGTTGG . 94.0 12.0 95.0 0.0 . 96 . . Atlas-SNP N4BP2 55728 hgsc.bcm.edu hg19 4 40123848 40123848 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . N4BP2 NM_018177 exon9 c.A4117G p.I1373V CTGACCATAGACT . 363.0 82.0 325.0 0.0 . 166 . . Atlas-SNP GRXCR1 389207 hgsc.bcm.edu hg19 4 42965143 42965143 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . GRXCR1 NM_001080476 exon2 c.T619A p.Y207N GGCCATTACCTTG . 124.0 46.0 148.0 0.0 . 78 . . Atlas-SNP ENPP6 133121 hgsc.bcm.edu hg19 4 185033941 185033941 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ENPP6 NM_153343 exon6 c.G877T p.V293L GTTCCACTGTGCT . 73.0 11.0 81.0 0.0 . 61 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19571838 19571838 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CDH18 NM_001167667 exon8 c.C1103G p.T368S AGCATAGTAGCAT . 237.0 70.0 198.0 0.0 . 561 . . Atlas-SNP TAF9 6880 hgsc.bcm.edu hg19 5 68651607 68651607 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TAF9 NM_016283 exon4 c.A195G p.L65L GTTATCTAACTCA . 218.0 86.0 201.0 0.0 . 28 . . Atlas-SNP MSH3 4437 hgsc.bcm.edu hg19 5 79950745 79950745 + Missense_Mutation SNP C C G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 MSH3,NS,carcinoma,0,1 MSH3 NM_002439 exon1 c.C199G p.P67A GCGCCCCCAGCTC . 71.0 9.0 67.0 0.0 . 129 . . Atlas-SNP BRD8 10902 hgsc.bcm.edu hg19 5 137485368 137485368 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . BRD8 NM_139199 exon23 c.T3239C p.L1080S TCCACCAAGGGAG . 204.0 68.0 187.0 0.0 . 192 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140562308 140562308 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PCDHB16 NM_020957 exon1 c.G174C p.E58D GACAGAGATGTCC . 133.0 45.0 129.0 0.0 . 159 . . Atlas-SNP PCDHGB1 56104 hgsc.bcm.edu hg19 5 140731163 140731163 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PCDHGB1 NM_018922 exon1 c.C1336A p.P446T AATGCACCTGTTT . 130.0 59.0 98.0 0.0 . 198 . . Atlas-SNP PCDHGA7 56108 hgsc.bcm.edu hg19 5 140763436 140763436 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PCDHGA7 NM_032087 exon1 c.G970T p.G324C CAAGATGGTCCTG . 190.0 69.0 154.0 0.0 . 130 . . Atlas-SNP SLIT3 6586 hgsc.bcm.edu hg19 5 168727673 168727673 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SLIT3 NM_001271946 exon1 c.C41G p.A14G AGGCGGGCGCGCA . 74.0 22.0 55.0 0.0 . 224 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169267834 169267834 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DOCK2 NM_004946 exon27 c.T2777C p.M926T TCACCATGGGCCG . 99.0 38.0 89.0 0.0 . 389 . . Atlas-SNP FAM153B 202134 hgsc.bcm.edu hg19 5 175530270 175530270 + Silent SNP C C T rs367572504 TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FAM153B NM_001265615 exon12 c.C474T p.N158N TTACAACGGCGAG . 1591.0 310.0 1266.0 0.0 . 28 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33414444 33414444 + Silent SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SYNGAP1 NM_006772 exon17 c.C3675A p.S1225S GCTGTCCCAGGAA . 123.0 27.0 173.0 0.0 . 202 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43226800 43226800 + Silent SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TTBK1 NM_032538 exon11 c.T1041A p.P347P AGTGCCTGGGGAC . 123.0 28.0 186.0 0.0 . 124 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51917968 51917968 + Silent SNP T T A rs4715271 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PKHD1 NM_170724 exon21 c.A2046T p.P682P CAGCACTGGGGAG . 141.0 30.0 166.0 0.0 . 927 . T|0.921;G|0.079 Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 66005906 66005906 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . EYS NM_001142800 exon12 c.C1873T p.H625Y AATTGTGCGAAAG . 78.0 18.0 122.0 0.0 . 527 . . Atlas-SNP BAI3 577 hgsc.bcm.edu hg19 6 69349286 69349286 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 BAI3,NS,carcinoma,0,1 BAI3 NM_001704 exon3 c.G719C p.C240S AAGTCTGCAATCT . 26.0 6.0 55.0 0.0 . 451 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90408665 90408665 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MDN1 NM_014611 exon59 c.A9087G p.P3029P GTACTCTGGATTT . 71.0 19.0 74.0 0.0 . 478 . . Atlas-SNP TRDN 10345 hgsc.bcm.edu hg19 6 123696761 123696761 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TRDN NM_001251987 exon19 c.A1265T p.Q422L TTTACTTGTTTGT . 105.0 20.0 109.0 0.0 . 88 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128388829 128388829 + Silent SNP C C T rs150985952 TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PTPRK NM_001135648 exon12 c.G1992A p.G664G TGCACCCCCACTC . 78.0 20.0 96.0 0.0 . 330 . C|1.000;T|0.000 Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159654122 159654122 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FNDC1 NM_032532 exon11 c.A2578G p.R860G CACCCCAGGGTTC . 60.0 16.0 70.0 0.0 . 250 . . Atlas-SNP PDE1C 5137 hgsc.bcm.edu hg19 7 31904592 31904592 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PDE1C NM_001191058 exon8 c.G894T p.Q298H CACTGTCTGTGTA . 177.0 48.0 105.0 0.0 . 465 . . Atlas-SNP ZNF3 7551 hgsc.bcm.edu hg19 7 99674959 99674959 + Missense_Mutation SNP C C T rs372465031 alternate_allele TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ZNF3 NM_032924 exon3 c.G22A p.V8I GAGATACGAGATC . 140.0 45.0 115.0 0.0 . 54 . . Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117375412 117375412 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CTTNBP2 NM_033427 exon15 c.T3599C p.L1200S TTTTCTAAATTTT . 189.0 29.0 158.0 0.0 . 200 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141795408 141795408 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MGAM NM_004668 exon41 c.C4814A p.S1605Y ATATTTCCAGAAC . 94.0 17.0 96.0 0.0 . 767 . . Atlas-SNP CUL1 8454 hgsc.bcm.edu hg19 7 148484107 148484107 + Silent SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CUL1 NM_003592 exon13 c.C1374T p.D458D AGAAGACAAAGAC . 56.0 22.0 48.0 0.0 . 80 . . Atlas-SNP CUL1 8454 hgsc.bcm.edu hg19 7 148484108 148484108 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CUL1 NM_003592 exon13 c.A1375G p.K459E GAAGACAAAGACG . 56.0 22.0 49.0 0.0 . 80 . . Atlas-SNP GIMAP6 474344 hgsc.bcm.edu hg19 7 150325099 150325099 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . GIMAP6 NM_001244072 exon3 c.A797G p.H266R CCGCAATGGCGCC . 84.0 30.0 70.0 0.0 . 60 . . Atlas-SNP RB1CC1 9821 hgsc.bcm.edu hg19 8 53596502 53596502 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . RB1CC1 NM_001083617 exon4 c.A143G p.N48S CCTCCATTGACCA . 88.0 44.0 69.0 0.0 . 163 . . Atlas-SNP CCNE2 9134 hgsc.bcm.edu hg19 8 95900175 95900175 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CCNE2 NM_057749 exon7 c.T580C p.F194L CAATGAATAATGA . 382.0 106.0 349.0 0.0 . 29 . . Atlas-SNP CNTFR 1271 hgsc.bcm.edu hg19 9 34568951 34568951 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CNTFR NM_147164 exon3 c.G29T p.C10F ACAGCACAGCAGG . 116.0 37.0 91.0 0.0 . 46 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35680975 35680975 + Missense_Mutation SNP G G A rs374397867 alternate_allele TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CA9 NM_001216 exon11 c.G1333A p.G445R ACCAAAGGGGGTG . 57.0 6.0 56.0 0.0 . 48 . . Atlas-SNP TOMM5 401505 hgsc.bcm.edu hg19 9 37588927 37588927 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TOMM5 NM_001134485 exon2 c.C226G p.P76A TAAATGGAGCTGA . 96.0 29.0 70.0 0.0 . 3 . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7318928 7318928 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SFMBT2 NM_001029880 exon7 c.T796A p.S266T ATTCAGAGGCCAT . 73.0 11.0 69.0 0.0 . 209 . . Atlas-SNP OTUD1 220213 hgsc.bcm.edu hg19 10 23729363 23729363 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . OTUD1 NM_001145373 exon1 c.G977C p.S326T CTGTCAGCAAGAC . 78.0 5.0 74.0 0.0 . 9 . . Atlas-SNP PRF1 5551 hgsc.bcm.edu hg19 10 72357836 72357836 + Silent SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PRF1 NM_001083116 exon3 c.A1641C p.P547P GTTTCCTGGAGGC . 52.0 6.0 50.0 0.0 . 64 . . Atlas-SNP SYNPO2L 79933 hgsc.bcm.edu hg19 10 75407632 75407632 + Missense_Mutation SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SYNPO2L NM_001114133 exon4 c.G1778A p.R593H TCTGGGCGCGCAG . 90.0 15.0 124.0 0.0 . 118 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 107006989 107006989 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SORCS3 NM_014978 exon22 c.C3005A p.S1002Y TCCAGTCCCAGCT . 67.0 25.0 92.0 0.0 . 282 . . Atlas-SNP FAM160B1 57700 hgsc.bcm.edu hg19 10 116603573 116603573 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FAM160B1 NM_020940 exon7 c.A890G p.K297R CTGCAAAGTGCCT . 68.0 8.0 99.0 0.0 . 107 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 135009312 135009312 + Missense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . KNDC1 NM_152643 exon10 c.C1721A p.A574D CCGCGGCTGAGGC . 106.0 20.0 98.0 0.0 . 155 . . Atlas-SNP CDHR5 53841 hgsc.bcm.edu hg19 11 621353 621353 + Silent SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CDHR5 NM_031264 exon6 c.C610T p.L204L GCACCAGCAGCCA . 77.0 20.0 70.0 0.0 . 77 . . Atlas-SNP PRDM11 56981 hgsc.bcm.edu hg19 11 45246411 45246411 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PRDM11 NM_001256696 exon7 c.G1386A p.M462I TTGGATGAGATTA . 30.0 11.0 37.0 0.0 . 53 . . Atlas-SNP PTPRJ 5795 hgsc.bcm.edu hg19 11 48142579 48142579 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PTPRJ NM_001098503 exon4 c.A377G p.K126R ACATTAAAGCTGT . 173.0 71.0 209.0 0.0 . 225 . . Atlas-SNP PRPF19 27339 hgsc.bcm.edu hg19 11 60670109 60670109 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PRPF19 NM_014502 exon5 c.A408G p.P136P AGCCTGTGGTTTC . 162.0 23.0 161.0 0.0 . 62 . . Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu hg19 11 64600763 64600763 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CDC42BPG NM_017525 exon24 c.A2671G p.K891E GACACTTGGTCGG . 91.0 30.0 110.0 0.0 . 101 . . Atlas-SNP ARHGEF17 9828 hgsc.bcm.edu hg19 11 73068372 73068372 + Missense_Mutation SNP G G C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ARHGEF17 NM_014786 exon9 c.G4087C p.G1363R ATCAAAGGTGGGT . 77.0 10.0 97.0 0.0 . 117 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103060402 103060402 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DYNC2H1 NM_001377 exon45 c.T7294C p.Y2432H TTTAGTTACCCAG . 83.0 8.0 71.0 0.0 . 246 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118376851 118376851 + Missense_Mutation SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MLL NM_001197104 exon27 c.C10244T p.S3415L GGACATCACAGAC . 87.0 19.0 104.0 0.0 . 548 . . Atlas-SNP DDX6 1656 hgsc.bcm.edu hg19 11 118650350 118650350 + Silent SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DDX6 NM_004397 exon4 c.T360A p.S120S AATAGGAGATGGC . 272.0 49.0 295.0 0.0 . 64 . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32491901 32491901 + Missense_Mutation SNP G G T rs141754177 bycluster;alternate_allele TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . BICD1 NM_001714 exon8 c.G2752T p.V918L TTAACCGTGGCTC . 43.0 24.0 45.0 0.0 . 89 . G|1.000;A|0.000 Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49433342 49433342 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MLL2 NM_003482 exon32 c.A8105T p.Q2702L TTCTCCTGCCGCA . 21.0 9.0 43.0 0.0 . 1173 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88534999 88534999 + Nonsense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CEP290 NM_025114 exon2 c.T86A p.L29X GAAATCAATAAAT . 326.0 70.0 346.0 0.0 . 195 . . Atlas-SNP ASCL4 121549 hgsc.bcm.edu hg19 12 108168997 108168997 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ASCL4 NM_203436 exon1 c.T5C p.M2T AAATGATGGAGAC . 150.0 64.0 169.0 0.0 . 28 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124821697 124821697 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NCOR2 NM_006312 exon40 c.C5717T p.P1906L GCAGCCGGGCGAA . 112.0 45.0 158.0 0.0 . 475 . . Atlas-SNP ATP8A2 51761 hgsc.bcm.edu hg19 13 26152991 26152991 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ATP8A2 NM_016529 exon21 c.A1821T p.K607N CTCAAAATATATG . 66.0 28.0 67.0 0.0 . 181 . . Atlas-SNP FRY 10129 hgsc.bcm.edu hg19 13 32776494 32776494 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FRY NM_023037 exon31 c.T3848C p.I1283T TATAGATCCTTGA . 139.0 63.0 168.0 0.0 . 312 . . Atlas-SNP THSD1 55901 hgsc.bcm.edu hg19 13 52971697 52971697 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . THSD1 NM_018676 exon3 c.A691G p.T231A GTCCTGTGGAGGT . 155.0 51.0 133.0 0.0 . 89 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64494342 64494342 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SYNE2 NM_182914 exon43 c.T6545C p.L2182S CTCAGTTAAAGAT . 262.0 53.0 309.0 0.0 . 577 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102446137 102446137 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DYNC1H1 NM_001376 exon4 c.T600C p.I200I AAATATTGAAATT . 152.0 26.0 173.0 0.0 . 395 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54305889 54305889 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . UNC13C NM_001080534 exon1 c.A789G p.L263L TGAACTACGAGGG . 55.0 20.0 86.0 0.0 . 674 . . Atlas-SNP MRPL46 26589 hgsc.bcm.edu hg19 15 89003046 89003046 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MRPL46 NM_022163 exon4 c.A638G p.Y213C AATGTGTAGTGCC . 83.0 20.0 81.0 0.0 . 13 . . Atlas-SNP GSPT1 2935 hgsc.bcm.edu hg19 16 11991860 11991860 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . GSPT1 NM_001130006 exon2 c.T385C p.L129L CACACAATGACTG . 126.0 35.0 135.0 0.0 . 71 . . Atlas-SNP ACSM2A 123876 hgsc.bcm.edu hg19 16 20489989 20489989 + Missense_Mutation SNP C C G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ACSM2A NM_001010845 exon11 c.C1271G p.S424C TCTTCTCTGGCTA . 73.0 23.0 87.0 0.0 . 120 . . Atlas-SNP VPS4A 27183 hgsc.bcm.edu hg19 16 69353433 69353433 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . VPS4A NM_013245 exon6 c.G607T p.G203W TGGCTGGGGGAGA . 68.0 13.0 68.0 0.0 . 18 . . Atlas-SNP GEMIN4 50628 hgsc.bcm.edu hg19 17 650889 650889 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . GEMIN4 NM_015721 exon2 c.C394A p.L132M TGGGCAGGGCCAT . 111.0 5.0 192.0 0.0 . 116 . . Atlas-SNP MYOCD 93649 hgsc.bcm.edu hg19 17 12608447 12608447 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MYOCD NM_001146312 exon2 c.T58C p.L20L TAAGTTTTACAGT . 295.0 88.0 364.0 0.0 . 291 . . Atlas-SNP PROCA1 147011 hgsc.bcm.edu hg19 17 27030972 27030972 + Silent SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PROCA1 NM_152465 exon4 c.C615T p.I205I CTTCTTGATCACC . 51.0 16.0 58.0 0.0 . 28 . . Atlas-SNP LHX1 3975 hgsc.bcm.edu hg19 17 35300131 35300131 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . LHX1 NM_005568 exon5 c.A924G p.P308P GACACCAGTGGAC . 253.0 55.0 291.0 0.0 . 48 . . Atlas-SNP KRT27 342574 hgsc.bcm.edu hg19 17 38936060 38936060 + Silent SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . KRT27 NM_181537 exon4 c.C738T p.N246N GGCCGCGTTCATC . 81.0 24.0 124.0 0.0 . 41 . . Atlas-SNP HAP1 9001 hgsc.bcm.edu hg19 17 39890781 39890781 + Nonsense_Mutation SNP C C A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . HAP1 NM_177977 exon1 c.G106T p.E36X AGGGCTCCGGAGC . 75.0 19.0 78.0 0.0 . 48 . . Atlas-SNP CACNG4 27092 hgsc.bcm.edu hg19 17 64961144 64961144 + Silent SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CACNG4 NM_014405 exon1 c.C117T p.H39H CGCGCACATCTGC . 152.0 42.0 185.0 0.0 . 44 . . Atlas-SNP GRIN2C 2905 hgsc.bcm.edu hg19 17 72842250 72842250 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . GRIN2C NM_000835 exon11 c.T2305A p.W769R GCTTCCAGTGGGA . 69.0 16.0 101.0 0.0 . 144 . . Atlas-SNP PGS1 9489 hgsc.bcm.edu hg19 17 76399940 76399940 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PGS1 NM_024419 exon7 c.T1172C p.L391P TCAACCTGACCCA . 87.0 25.0 97.0 0.0 . 30 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 6956653 6956653 + Silent SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . LAMA1 NM_005559 exon56 c.A8076C p.P2692P GGGCTCTGGCAAG . 67.0 19.0 40.0 0.0 . 458 . . Atlas-SNP CXXC1 30827 hgsc.bcm.edu hg19 18 47809307 47809307 + Missense_Mutation SNP G G A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CXXC1 NM_001101654 exon14 c.C1753T p.R585C GCAGGCGGCAGAA . 108.0 20.0 93.0 0.0 . 50 . . Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64211362 64211362 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CDH19 NM_021153 exon7 c.A1060T p.T354S AAGTGGTGGAAGC . 108.0 42.0 103.0 0.0 . 141 . . Atlas-SNP SALL3 27164 hgsc.bcm.edu hg19 18 76757118 76757118 + Silent SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SALL3 NM_171999 exon3 c.C3699T p.I1233I CGTCATCCAGAAC . 166.0 55.0 171.0 0.0 . 162 . . Atlas-SNP ADAMTSL5 339366 hgsc.bcm.edu hg19 19 1510211 1510211 + Missense_Mutation SNP A A C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ADAMTSL5 NM_213604 exon5 c.T299G p.L100R TTGTACAGGGCAC . 81.0 11.0 77.0 0.0 . 24 . . Atlas-SNP ATCAY 85300 hgsc.bcm.edu hg19 19 3913803 3913803 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ATCAY NM_033064 exon9 c.T914C p.L305P AAGACCTGGAGCA . 82.0 24.0 79.0 0.0 . 84 . . Atlas-SNP ZNF506 440515 hgsc.bcm.edu hg19 19 19906192 19906192 + Silent SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ZNF506 NM_001099269 exon4 c.T504A p.T168T TTTTCCAGTATCT . 118.0 37.0 102.0 0.0 . 36 . . Atlas-SNP TGFB1 7040 hgsc.bcm.edu hg19 19 41858864 41858864 + Missense_Mutation SNP C C T rs199758510 bycluster TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . TGFB1 NM_000660 exon1 c.G86A p.G29E GATAGTCCCGCGG . 65.0 22.0 54.0 0.0 . 27 . . Atlas-SNP ZNF229 7772 hgsc.bcm.edu hg19 19 44933761 44933761 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ZNF229 NM_014518 exon6 c.C1195A p.H399N CAGTGTGGACCCT . 152.0 48.0 115.0 0.0 . 123 . . Atlas-SNP FAM71E2 284418 hgsc.bcm.edu hg19 19 55869581 55869581 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FAM71E2 NM_001145402 exon9 c.T2655C p.T885T CCTCACAGTTTCA . 139.0 47.0 130.0 0.0 . 41 . . Atlas-SNP NLRP4 147945 hgsc.bcm.edu hg19 19 56388508 56388508 + Missense_Mutation SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NLRP4 NM_134444 exon8 c.C2672T p.T891M CGCATACGGATTG . 153.0 36.0 151.0 0.0 . 331 . . Atlas-SNP NINL 22981 hgsc.bcm.edu hg19 20 25478971 25478971 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . NINL NM_025176 exon9 c.C1044A p.F348L CACGCTGAAGTCC . 39.0 15.0 41.0 0.0 . 148 . . Atlas-SNP BPIFB3 359710 hgsc.bcm.edu hg19 20 31643273 31643273 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . . NM_182658 exon1 c.G44T p.W15L TGCTCTGGGGCCT . 63.0 9.0 49.0 0.0 . . . . Atlas-SNP CBFA2T2 9139 hgsc.bcm.edu hg19 20 32207337 32207337 + Silent SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CBFA2T2 NM_005093 exon5 c.A462G p.T154T AGTGACAATTGAG . 103.0 22.0 101.0 0.0 . 93 . . Atlas-SNP MYBL2 4605 hgsc.bcm.edu hg19 20 42343871 42343871 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MYBL2 NM_002466 exon13 c.A1922T p.E641V AGCCCGAGAAGGC . 233.0 90.0 247.0 0.0 . 82 . . Atlas-SNP PHACTR3 116154 hgsc.bcm.edu hg19 20 58348348 58348348 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PHACTR3 NM_080672 exon6 c.T766C p.F256L ACACTCTTCCAAG . 110.0 27.0 127.0 0.0 . 104 . . Atlas-SNP B3GALT5 10317 hgsc.bcm.edu hg19 21 41032874 41032874 + Missense_Mutation SNP A A G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . B3GALT5 NM_033170 exon3 c.A388G p.N130D TATTACAATCTGA . 87.0 14.0 103.0 0.0 . 40 . . Atlas-SNP MCM3AP 8888 hgsc.bcm.edu hg19 21 47692553 47692553 + Missense_Mutation SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . MCM3AP NM_003906 exon8 c.A2387C p.K796T ACACCCTTGTTTC . 89.0 21.0 103.0 0.0 . 146 . . Atlas-SNP CRYBB2 1415 hgsc.bcm.edu hg19 22 25627596 25627596 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CRYBB2 NM_000496 exon6 c.T475A p.Y159N CCCGGCTACCGTG . 184.0 44.0 176.0 0.0 . 18 . . Atlas-SNP CHEK2 11200 hgsc.bcm.edu hg19 22 29130702 29130702 + Missense_Mutation SNP C C T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CHEK2 NM_145862 exon2 c.G8A p.R3Q GACTCCCGAGACA . 55.0 20.0 52.0 0.0 . 438 . . Atlas-SNP HMGXB4 10042 hgsc.bcm.edu hg19 22 35661318 35661318 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . HMGXB4 NM_001003681 exon5 c.T937C p.Y313H GATTCTTACCGAG . 153.0 27.0 151.0 0.0 . 52 . . Atlas-SNP SREBF2 6721 hgsc.bcm.edu hg19 22 42280874 42280874 + Silent SNP C C T rs200493376 TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SREBF2 NM_004599 exon11 c.C2067T p.S689S CTGTTCCGATGTA . 116.0 26.0 122.0 0.0 . 99 . C|0.999;T|0.001 Atlas-SNP FRMPD4 9758 hgsc.bcm.edu hg19 X 12516855 12516855 + Missense_Mutation SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . FRMPD4 NM_014728 exon2 c.A98T p.Q33L TGAGCCAGGTGCC . 233.0 92.0 197.0 0.0 . 214 . . Atlas-SNP PDHA1 5160 hgsc.bcm.edu hg19 X 19367462 19367462 + Missense_Mutation SNP T T G novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . PDHA1 NM_001173454 exon3 c.T204G p.F68L TAATTTTGCAAAT . 354.0 104.0 349.0 0.0 . 85 . . Atlas-SNP USP27X 389856 hgsc.bcm.edu hg19 X 49646154 49646154 + Missense_Mutation SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . USP27X NM_001145073 exon1 c.T1244C p.L415S GGTATTTACTGTT . 267.0 74.0 225.0 0.0 . 25 . . Atlas-SNP ARR3 407 hgsc.bcm.edu hg19 X 69497340 69497340 + Silent SNP A A T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . ARR3 NM_004312 exon9 c.A570T p.S190S TCTGTCAGCTCAG . 388.0 119.0 337.0 1.0 . 41 . . Atlas-SNP CUL4B 8450 hgsc.bcm.edu hg19 X 119677623 119677623 + Silent SNP T T C novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . CUL4B NM_003588 exon10 c.A1269G p.E423E TGCTTCTTCTTCT . 153.0 50.0 144.0 0.0 . 181 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144905172 144905172 + Missense_Mutation SNP G G T novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SLITRK2 NM_001144005 exon5 c.G1229T p.R410M ACAACAGGATTGC . 229.0 66.0 229.0 0.0 . 221 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144906450 144906450 + Missense_Mutation SNP T T A novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . SLITRK2 NM_001144005 exon5 c.T2507A p.L836Q AAGTTCTGGAAAA . 454.0 145.0 388.0 0.0 . 221 . . Atlas-SNP DSG4 147409 hgsc.bcm.edu hg19 18 28992917 28992917 + Frame_Shift_Del DEL T T - novel TCGA-ZP-A9D1-01A-11D-A382-10 TCGA-ZP-A9D1-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 2460c441-afaf-48ea-b29d-e1ec16a2b246 a8172d2a-1255-4865-938b-5a96f7faf691 . DSG4 NM_001134453 exon15 c.2538delC p.D846fs . . 121.0 40.0 84.0 0.0 . 343 . . Atlas-INDEL