Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CSMD2 114784 hgsc.bcm.edu hg19 1 34291374 34291374 + Silent SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . CSMD2 NM_052896 exon7 c.C915A p.V305V CTTCTTGACTAGA . 46.0 19.0 33.0 0.0 . 946 . . Atlas-SNP REG4 83998 hgsc.bcm.edu hg19 1 120345731 120345731 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . REG4 NM_001159353 exon3 c.A125G p.Y42C TAACCATAGCAAT . 141.0 43.0 128.0 0.0 . 36 . . Atlas-SNP DISP1 84976 hgsc.bcm.edu hg19 1 223177664 223177664 + Missense_Mutation SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DISP1 NM_032890 exon10 c.C2925A p.D975E CTATGACCTCCAG . 142.0 12.0 76.0 0.0 . 145 . . Atlas-SNP TUBA3E 112714 hgsc.bcm.edu hg19 2 130951447 130951447 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . TUBA3E NM_207312 exon4 c.T968C p.V323A GGGACCACGTCCC . 128.0 32.0 92.0 0.0 . 73 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196825326 196825326 + Missense_Mutation SNP C C A rs374382600 alternate_allele TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DNAH7 NM_018897 exon18 c.G2549T p.R850L CTGGGGCGCAAAC . 111.0 33.0 89.0 0.0 . 512 . . Atlas-SNP EPHA4 2043 hgsc.bcm.edu hg19 2 222365844 222365844 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . EPHA4 NM_004438 exon4 c.C872G p.A291G CACTTGGCACAGG . 104.0 6.0 69.0 0.0 . 263 . . Atlas-SNP COL4A3 1285 hgsc.bcm.edu hg19 2 228147228 228147228 + Missense_Mutation SNP C C T rs368342782 TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . COL4A3 NM_000091 exon32 c.C2636T p.P879L GAAATCCGGGAAT . 191.0 58.0 171.0 0.0 . 293 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 233001275 233001275 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DIS3L2 NM_152383 exon8 c.G796T p.A266S AAATACGCCCTGT . 168.0 60.0 143.0 0.0 . 77 . . Atlas-SNP OR6B2 389090 hgsc.bcm.edu hg19 2 240969050 240969050 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . OR6B2 NM_001005853 exon1 c.A797T p.D266V TGGGAATCAATGG . 315.0 118.0 260.0 0.0 . 30 . . Atlas-SNP KBTBD12 166348 hgsc.bcm.edu hg19 3 127642185 127642185 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . KBTBD12 NM_207335 exon1 c.T281C p.L94S CAGCTTTGGAGAT . 176.0 54.0 130.0 0.0 . 41 . . Atlas-SNP DNAJC13 23317 hgsc.bcm.edu hg19 3 132241675 132241675 + Nonsense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DNAJC13 NM_015268 exon49 c.C5677T p.R1893X TAGGTTCGAATTA . 247.0 49.0 184.0 0.0 . 253 . . Atlas-SNP STX18 53407 hgsc.bcm.edu hg19 4 4421847 4421847 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . STX18 NM_016930 exon11 c.A922T p.N308Y CGTTGTTTTTAAT . 64.0 22.0 50.0 0.0 . 16 . . Atlas-SNP PPEF2 5470 hgsc.bcm.edu hg19 4 76797690 76797690 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PPEF2 NM_006239 exon11 c.C1070T p.S357L AGGGGCGAAGAGG . 128.0 48.0 90.0 0.0 . 108 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88536436 88536436 + Silent SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DSPP NM_014208 exon5 c.C2622T p.S874S CAGCAGCAACAGC . 312.0 29.0 206.0 0.0 . 174 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537513 88537513 + Missense_Mutation SNP A A C rs112275895 TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DSPP NM_014208 exon5 c.A3699C p.E1233D CAATGAAAGCAGC . 396.0 40.0 270.0 0.0 . 174 . A|0.500;C|0.500 Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138452550 138452550 + Silent SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PCDH18 NM_019035 exon1 c.A693T p.I231I TTTTAGTATGGAT . 82.0 30.0 47.0 0.0 . 229 . . Atlas-SNP ADAMTS12 81792 hgsc.bcm.edu hg19 5 33534965 33534965 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ADAMTS12 NM_030955 exon23 c.A4579G p.N1527D GCTGGTTGCATTT . 112.0 40.0 62.0 0.0 . 464 . . Atlas-SNP MAP3K1 4214 hgsc.bcm.edu hg19 5 56161727 56161727 + Missense_Mutation SNP C C G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . MAP3K1 NM_005921 exon6 c.C1224G p.I408M CACCATCCAGAAG . 195.0 58.0 130.0 0.0 . 355 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60817140 60817140 + Nonsense_Mutation SNP A A T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZSWIM6 NM_020928 exon5 c.A1384T p.K462X GAGCAAAAGGCCA . 213.0 39.0 139.0 0.0 . 51 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60817151 60817151 + Nonsense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZSWIM6 NM_020928 exon5 c.G1395A p.W465X CAGTTGGCTAAAA . 217.0 41.0 134.0 0.0 . 51 . . Atlas-SNP CCNB1 891 hgsc.bcm.edu hg19 5 68471253 68471253 + Silent SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . CCNB1 NM_031966 exon7 c.A972G p.K324K GGCCAAATACCTG . 167.0 51.0 123.0 0.0 . 36 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 90078941 90078941 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . GPR98 NM_032119 exon66 c.T13232A p.V4411E TTACAGTGGAGGA . 127.0 35.0 108.0 0.0 . 605 . . Atlas-SNP PCDHGB6 56100 hgsc.bcm.edu hg19 5 140787904 140787904 + Silent SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PCDHGB6 NM_032100 exon1 c.G135T p.S45S GGGCTCGGTGGTG . 146.0 18.0 108.0 0.0 . 120 . . Atlas-SNP PCDHGB6 56100 hgsc.bcm.edu hg19 5 140789789 140789789 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PCDHGB6 NM_032100 exon1 c.G2020T p.D674Y CTGCCAGACCTCA . 107.0 37.0 63.0 0.0 . 120 . . Atlas-SNP SLC34A1 6569 hgsc.bcm.edu hg19 5 176821180 176821180 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . SLC34A1 NM_003052 exon10 c.G1158T p.Q386H CATCCAGAAGGTC . 139.0 48.0 96.0 0.0 . 73 . . Atlas-SNP ZFP57 346171 hgsc.bcm.edu hg19 6 29641190 29641190 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZFP57 NM_001109809 exon4 c.G698A p.C233Y AGCGTGCAACAGA . 117.0 35.0 98.0 0.0 . 80 . . Atlas-SNP DOM3Z 1797 hgsc.bcm.edu hg19 6 31938745 31938745 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DOM3Z NM_005510 exon3 c.C536T p.P179L AGGAGCGGTGGCC . 60.0 23.0 36.0 0.0 . 20 . . Atlas-SNP EEF1A1 1915 hgsc.bcm.edu hg19 6 74229110 74229110 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . EEF1A1 NM_001402 exon3 c.G274A p.A92T CTGGGGCATCAAT . 76.0 29.0 39.0 0.0 . 56 . . Atlas-SNP SLC2A12 154091 hgsc.bcm.edu hg19 6 134350236 134350236 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . SLC2A12 NM_145176 exon2 c.C727G p.L243V CTGAGAGTGCTCT . 152.0 45.0 134.0 0.0 . 43 . . Atlas-SNP GPR126 57211 hgsc.bcm.edu hg19 6 142738477 142738477 + Missense_Mutation SNP A A T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . GPR126 NM_198569 exon21 c.A3006T p.E1002D AAAAGAAAGTTAT . 227.0 71.0 171.0 0.0 . 192 . . Atlas-SNP TTYH3 80727 hgsc.bcm.edu hg19 7 2689555 2689555 + Silent SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . TTYH3 NM_025250 exon7 c.C804T p.S268S CTCCAGCGACTTC . 95.0 7.0 59.0 0.0 . 36 . . Atlas-SNP CACNA2D1 781 hgsc.bcm.edu hg19 7 81689806 81689806 + Silent SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . CACNA2D1 NM_000722 exon10 c.C817A p.R273R ATGTTCGGATCAG . 108.0 38.0 72.0 0.0 . 191 . . Atlas-SNP TMEM66 51669 hgsc.bcm.edu hg19 8 29927547 29927547 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . TMEM66 NM_016127 exon3 c.C311G p.A104G TTGTATGCAATAT . 39.0 15.0 31.0 0.0 . 23 . . Atlas-SNP LYN 4067 hgsc.bcm.edu hg19 8 56866505 56866505 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . LYN NM_002350 exon8 c.A752G p.K251R TGGTGAAAAGGCT . 200.0 63.0 131.0 0.0 . 54 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110509162 110509162 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PKHD1L1 NM_177531 exon64 c.G10342C p.V3448L AATCCTGTGGAAA . 115.0 37.0 82.0 0.0 . 522 . . Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 730216 730216 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . KANK1 NM_001256876 exon8 c.T2864A p.L955Q TGAACCTGACAGA . 132.0 52.0 77.0 0.0 . 231 . . Atlas-SNP RANBP6 26953 hgsc.bcm.edu hg19 9 6015125 6015125 + Missense_Mutation SNP G G T rs149927185 alternate_allele TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . RANBP6 NM_012416 exon1 c.C483A p.H161Q GAAAACGTGAAGT . 128.0 38.0 90.0 0.0 . 127 . G|1.000;A|0.000 Atlas-SNP KIAA1958 158405 hgsc.bcm.edu hg19 9 115337345 115337345 + Nonsense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . KIAA1958 NM_133465 exon2 c.C985T p.Q329X GCCCTGCAGCTGC . 55.0 16.0 42.0 0.0 . 52 . . Atlas-SNP RGS3 5998 hgsc.bcm.edu hg19 9 116303703 116303703 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . RGS3 NM_017790 exon18 c.G1805T p.G602V TGATTGGCTGAGC . 120.0 41.0 75.0 0.0 . 251 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137688730 137688730 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . COL5A1 NM_000093 exon36 c.G2881A p.G961R TTTCCTGGACCAA . 122.0 35.0 94.0 0.0 . 323 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26462696 26462696 + Missense_Mutation SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . MYO3A NM_017433 exon30 c.C3503A p.T1168N CTTCCACTTTCAA . 222.0 75.0 177.0 0.0 . 371 . . Atlas-SNP LRRC20 55222 hgsc.bcm.edu hg19 10 72061218 72061218 + Silent SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . LRRC20 NM_207119 exon5 c.C447T p.I149I GAGGTTGATGCTG . 61.0 17.0 45.0 0.0 . 19 . . Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108339004 108339004 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . SORCS1 NM_001206572 exon26 c.T3377C p.I1126T CCCGGGATCTTCC . 77.0 6.0 56.0 0.0 . 534 . . Atlas-SNP OR5L1 219437 hgsc.bcm.edu hg19 11 55579715 55579715 + Missense_Mutation SNP T T G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . OR5L1 NM_001004738 exon1 c.T773G p.I258S TTTCCATTTATTG . 112.0 33.0 70.0 0.0 . 145 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93836112 93836112 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . HEPHL1 NM_001098672 exon15 c.A2608G p.K870E ATCCCTAAAAGAT . 86.0 32.0 68.0 0.0 . 144 . . Atlas-SNP ZNF202 7753 hgsc.bcm.edu hg19 11 123599920 123599920 + Missense_Mutation SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZNF202 NM_003455 exon6 c.G616T p.V206F CTGGGACCTCTAT . 47.0 21.0 30.0 0.0 . 72 . . Atlas-SNP PRMT8 56341 hgsc.bcm.edu hg19 12 3692299 3692299 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PRMT8 NM_019854 exon8 c.G904A p.D302N CGCAACGACTACG . 108.0 40.0 69.0 0.0 . 97 . . Atlas-SNP BHLHE41 79365 hgsc.bcm.edu hg19 12 26275865 26275865 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . BHLHE41 NM_030762 exon5 c.G583A p.A195T CGGCGGCCGAGGG . 161.0 50.0 121.0 0.0 . 20 . . Atlas-SNP CCDC53 51019 hgsc.bcm.edu hg19 12 102455087 102455087 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . CCDC53 NM_016053 exon2 c.T89C p.L30P TGGTTTAGAAAAG . 155.0 59.0 119.0 0.0 . 14 . . Atlas-SNP C12orf76 400073 hgsc.bcm.edu hg19 12 110496826 110496826 + Missense_Mutation SNP A A T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . C12orf76 NM_207435 exon3 c.T158A p.I53N GTATGAATGAAGC . 213.0 65.0 153.0 0.0 . 10 . . Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112915714 112915714 + Silent SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PTPN11 NM_080601 exon9 c.C987A p.A329A CATTGCCACACAA . 198.0 78.0 165.0 0.0 . 623 . . Atlas-SNP BRCA2 675 hgsc.bcm.edu hg19 13 32936724 32936724 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . BRCA2 NM_000059 exon17 c.T7870A p.Y2624N AATCACTATAGAT . 182.0 35.0 117.0 0.0 . 812 . . Atlas-SNP TPP2 7174 hgsc.bcm.edu hg19 13 103268744 103268744 + Splice_Site SNP A A T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . TPP2 NM_003291 exon4 c.391-2A>T . CTTTGCAGAAAGA . 133.0 57.0 77.0 0.0 . 124 . . Atlas-SNP FAM155A 728215 hgsc.bcm.edu hg19 13 107822876 107822876 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . FAM155A NM_001080396 exon3 c.C1346A p.T449K TCCAGCGTGTTGA . 43.0 13.0 26.0 0.0 . 82 . . Atlas-SNP ING1 3621 hgsc.bcm.edu hg19 13 111367802 111367802 + Silent SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ING1 NM_001267728 exon1 c.G12T p.V4V CTTCGTGGAATGT . 73.0 26.0 56.0 0.0 . 106 . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60212764 60212764 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . RTN1 NM_021136 exon2 c.A677G p.D226G TCAGTGTCTTTAT . 163.0 51.0 143.0 0.0 . 139 . . Atlas-SNP NRDE2 55051 hgsc.bcm.edu hg19 14 90756941 90756941 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . . NM_017970 exon10 c.A1853T p.D618V ATATCATCAAACA . 186.0 66.0 141.0 0.0 . . . . Atlas-SNP DPP8 54878 hgsc.bcm.edu hg19 15 65746732 65746732 + Nonsense_Mutation SNP G G A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DPP8 NM_197960 exon18 c.C2188T p.Q730X CCACCTGATCGTC . 103.0 32.0 95.0 0.0 . 78 . . Atlas-SNP LOXL1 4016 hgsc.bcm.edu hg19 15 74235244 74235244 + Silent SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . LOXL1 NM_005576 exon2 c.T1152C p.Y384Y CACTTATGTGCAG . 98.0 33.0 67.0 0.0 . 25 . . Atlas-SNP IL16 3603 hgsc.bcm.edu hg19 15 81598333 81598333 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . IL16 NM_001172128 exon17 c.T3505C p.S1169P GGCAAGTCTCTCA . 114.0 41.0 81.0 0.0 . 254 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9892293 9892293 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . GRIN2A NM_000833 exon12 c.G2197A p.A733T AGACTGCGGCATC . 131.0 26.0 84.0 0.0 . 366 . . Atlas-SNP SPN 6693 hgsc.bcm.edu hg19 16 29675057 29675057 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 SPN,NS,carcinoma,0,1 SPN NM_001030288 exon2 c.C8T p.T3M TGGCCACGCTTCT . 67.0 23.0 62.0 0.0 . 44 . . Atlas-SNP MTSS1L 92154 hgsc.bcm.edu hg19 16 70698645 70698645 + Missense_Mutation SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . MTSS1L NM_138383 exon14 c.G1327T p.A443S TGGCGGCGGGGGA . 108.0 19.0 105.0 0.0 . 22 . . Atlas-SNP OR1E2 8388 hgsc.bcm.edu hg19 17 3336671 3336671 + Silent SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . OR1E2 NM_003554 exon1 c.G465A p.A155A GGACAGCGCCACC . 207.0 31.0 164.0 0.0 . 25 . . Atlas-SNP TBX4 9496 hgsc.bcm.edu hg19 17 59557244 59557244 + Silent SNP C C A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . TBX4 NM_018488 exon6 c.C705A p.I235I ACAGATCACCCAG . 170.0 19.0 108.0 0.0 . 69 . . Atlas-SNP SERPINB8 5271 hgsc.bcm.edu hg19 18 61654510 61654510 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . SERPINB8 NM_198833 exon7 c.T1123C p.X375Q TCTCCGTAAAGAG . 83.0 4.0 58.0 0.0 . 42 . . Atlas-SNP AP1M1 8907 hgsc.bcm.edu hg19 19 16314322 16314322 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . AP1M1 NM_001130524 exon2 c.A95G p.H32R TGGAGCACTTCAT . 97.0 29.0 74.0 0.0 . 48 . . Atlas-SNP ZNF737 100129842 hgsc.bcm.edu hg19 19 20728081 20728081 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZNF737 NM_001159293 exon4 c.G928A p.E310K GTTTCTCTCCGCT . 119.0 6.0 87.0 0.0 . 50 . . Atlas-SNP EGLN2 112398 hgsc.bcm.edu hg19 19 41307313 41307313 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . EGLN2 NM_053046 exon2 c.G836T p.R279L ACGGGCGCACCAA . 60.0 15.0 36.0 0.0 . 31 . . Atlas-SNP ZNF415 55786 hgsc.bcm.edu hg19 19 53612770 53612770 + Silent SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZNF415 NM_018355 exon4 c.A528G p.S176S GGGTGGTGAAACT . 155.0 29.0 114.0 0.0 . 68 . . Atlas-SNP RRBP1 6238 hgsc.bcm.edu hg19 20 17596112 17596112 + Silent SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . RRBP1 NM_004587 exon23 c.A2715G p.L905L AGACTCTAGGGGG . 39.0 18.0 30.0 0.0 . 157 . . Atlas-SNP ABHD16B 140701 hgsc.bcm.edu hg19 20 62493842 62493842 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ABHD16B NM_080622 exon1 c.C949T p.L317F CTGCTGCTCCGAC . 73.0 28.0 43.0 0.0 . 22 . . Atlas-SNP BPIFC 254240 hgsc.bcm.edu hg19 22 32827371 32827371 + Silent SNP A A G rs370427363 TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . . NM_174932 exon11 c.T1180C p.L394L GTCCCAAAATAAC . 301.0 93.0 234.0 0.0 . . . . Atlas-SNP ZC3H7B 23264 hgsc.bcm.edu hg19 22 41751769 41751769 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ZC3H7B NM_017590 exon19 c.A2177G p.K726R GGACCAAGGAGCG . 116.0 44.0 80.0 0.0 . 82 . . Atlas-SNP CASK 8573 hgsc.bcm.edu hg19 X 41379791 41379791 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . CASK NM_003688 exon27 c.A2648T p.H883L AAGTAGTGTGCAT . 87.0 36.0 50.0 0.0 . 93 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53574709 53574709 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . HUWE1 NM_031407 exon68 c.A10561G p.T3521A TAGCCGTGGCAGC . 174.0 32.0 139.0 0.0 . 724 . . Atlas-SNP IRS4 8471 hgsc.bcm.edu hg19 X 107978082 107978082 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . IRS4 NM_003604 exon1 c.G1493A p.G498D CCCCGGCCATTTC . 151.0 58.0 121.0 0.0 . 253 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135429239 135429239 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . GPR112 NM_153834 exon6 c.A3374G p.E1125G AGGCTGAGACCAC . 181.0 52.0 144.0 0.0 . 459 . . Atlas-SNP DKC1 1736 hgsc.bcm.edu hg19 X 153991251 153991251 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . DKC1 NM_001363 exon1 c.C11T p.A4V CGGATGCGGAAGG . 362.0 127.0 273.0 0.0 . 41 . . Atlas-SNP PGBD5 79605 hgsc.bcm.edu hg19 1 230492769 230492770 + Frame_Shift_Ins INS - - T novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . PGBD5 NM_001258311 exon2 c.630_631insA p.K210fs . . 156.0 70.0 92.0 0.0 . 73 . . Atlas-INDEL XIRP2 129446 hgsc.bcm.edu hg19 2 168102782 168102782 + Frame_Shift_Del DEL A A - novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . XIRP2 NM_152381 exon9 c.4879delG p.E1627fs . . 312.0 126.0 229.0 0.0 . 914 . . Atlas-INDEL ACVR2A 92 hgsc.bcm.edu hg19 2 148684717 148684722 + In_Frame_Del DEL TGGATG TGGATG - novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 TGGATG TGGATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ACVR2A NM_001616 exon11 c.1415_1420del p.472_474del . . 146.0 48.0 122.0 0.0 . 125 . . Atlas-INDEL ITIH4 3700 hgsc.bcm.edu hg19 3 52855127 52855128 + Frame_Shift_Del DEL AA AA - novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . ITIH4 NM_002218 exon12 c.1559_1560del p.520_520del . . 74.0 22.0 48.0 0.0 . 74 . . Atlas-INDEL RIBC1 158787 hgsc.bcm.edu hg19 X 53455601 53455616 + Frame_Shift_Del DEL AGAGACCTGAGGCCTA AGAGACCTGAGGCCTA - novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 AGAGACCTGAGGCCTA AGAGACCTGAGGCCTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . RIBC1 NM_144968 exon5 c.569_817del p.190_193del . . 350.0 80.0 278.0 0.0 . 20 . . Atlas-INDEL UMPS 7372 hgsc.bcm.edu hg19 3 124456869 124456886 + In_Frame_Del DEL TCTATCTGCTGATGTTTC TCTATCTGCTGATGTTTC - novel TCGA-ZP-A9CY-01A-11D-A382-10 TCGA-ZP-A9CY-10B-01D-A385-10 TCTATCTGCTGATGTTTC TCTATCTGCTGATGTTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 3a74a213-3d11-481d-80af-c56a90e932ad e224c0c8-8493-4ce1-855b-34fc11453c98 . UMPS NM_000373 exon3 c.764_781del p.255_261del . . 129.0 27.0 96.0 0.0 . 43 . . Atlas-INDEL