Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PTCHD2 57540 hgsc.bcm.edu hg19 1 11561824 11561824 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PTCHD2 NM_020780 exon2 c.T775A p.S259T GACTACTCGCGCG . 78.0 5.0 125.0 0.0 . 193 . . Atlas-SNP ZCCHC11 23318 hgsc.bcm.edu hg19 1 52897111 52897111 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZCCHC11 NM_001009881 exon28 c.C4285T p.P1429S GCTGAGGAGAATA . 179.0 85.0 142.0 0.0 . 151 . . Atlas-SNP DPYD 1806 hgsc.bcm.edu hg19 1 98015193 98015193 + Missense_Mutation SNP C C T rs141439344 TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DPYD NM_000110 exon12 c.G1447A p.V483I AACCAACGACATC . 105.0 30.0 132.0 0.0 . 219 . C|1.000;T|0.000 Atlas-SNP CSF1 1435 hgsc.bcm.edu hg19 1 110466107 110466107 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CSF1 NM_172210 exon6 c.C864T p.N288N CTTCAACCCCGGG . 100.0 31.0 119.0 0.0 . 40 . . Atlas-SNP SYCP1 6847 hgsc.bcm.edu hg19 1 115438077 115438077 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SYCP1 NM_003176 exon16 c.A1267T p.T423S GAGATGACTAAGC . 567.0 352.0 583.0 1.0 . 149 . . Atlas-SNP SPAG17 200162 hgsc.bcm.edu hg19 1 118640441 118640441 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SPAG17 NM_206996 exon7 c.C863T p.A288V TTTATGGCATTTT . 110.0 28.0 133.0 0.0 . 263 . . Atlas-SNP NBPF7 343505 hgsc.bcm.edu hg19 1 120384152 120384152 + Missense_Mutation SNP C C G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 NBPF7,right_upper_lobe,carcinoma,0,1 NBPF7 NM_001047980 exon3 c.G410C p.R137T GCATCTCTCCCTT . 147.0 40.0 168.0 0.0 . 46 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084224 152084224 + Missense_Mutation SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TCHH NM_007113 exon3 c.A1469G p.K490R TCGAGCTTCAGCC . 59.0 5.0 37.0 0.0 . 275 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154841900 154841900 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . KCNN3 NM_001204087 exon1 c.A541T p.S181C CACCGCTATACTT . 110.0 48.0 98.0 0.0 . 141 . . Atlas-SNP SLC25A44 9673 hgsc.bcm.edu hg19 1 156170105 156170105 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SLC25A44 NM_014655 exon2 c.A467G p.E156G ACCCAGAGGGACA . 123.0 39.0 82.0 0.0 . 30 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157805704 157805704 + Silent SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 CD5L,NS,carcinoma,0,1 CD5L NM_005894 exon3 c.A297C p.T99T ATCTTCTGTTCCT . 96.0 30.0 86.0 0.0 . 112 . . Atlas-SNP IL10 3586 hgsc.bcm.edu hg19 1 206945657 206945657 + Nonsense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . IL10 NM_000572 exon1 c.C124T p.R42X GATCTCGAAGCAT . 139.0 66.0 71.0 0.0 . 22 . . Atlas-SNP ESRRG 2104 hgsc.bcm.edu hg19 1 216850491 216850491 + Missense_Mutation SNP G G C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ESRRG NM_001243518 exon3 c.C414G p.D138E AGCGATGTCACCA . 224.0 80.0 113.0 0.0 . 111 . . Atlas-SNP TRIM67 440730 hgsc.bcm.edu hg19 1 231344891 231344891 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TRIM67 NM_001004342 exon8 c.C2018T p.A673V CCAGGGCCAGCGT . 296.0 112.0 160.0 0.0 . 160 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240256430 240256430 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . FMN2 NM_020066 exon1 c.G1021A p.G341R GTGCGAGGGGCTG . 69.0 24.0 29.0 0.0 . 451 . . Atlas-SNP OR2T34 127068 hgsc.bcm.edu hg19 1 248737365 248737365 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 OR2T34,NS,carcinoma,+1,1 OR2T34 NM_001001821 exon1 c.A694T p.R232W TCATCCTGTGGAT . 536.0 167.0 284.0 1.0 . 72 . . Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11809668 11809668 + Silent SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NTSR2 NM_012344 exon1 c.G588T p.V196V CACCAGCACCGTG . 31.0 20.0 32.0 0.0 . 36 . . Atlas-SNP LPIN1 23175 hgsc.bcm.edu hg19 2 11913854 11913854 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LPIN1 NM_001261428 exon6 c.G852T p.E284D TAGAGAGTGGTCA . 60.0 20.0 81.0 0.0 . 99 . . Atlas-SNP SMEK2 57223 hgsc.bcm.edu hg19 2 55825633 55825633 + Silent SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SMEK2 NM_001122964 exon4 c.A840G p.P280P AACAGATGGTGTG . 319.0 103.0 396.0 0.0 . 86 . . Atlas-SNP EGR4 1961 hgsc.bcm.edu hg19 2 73519494 73519494 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 EGR4_ENST00000545030,NS,adenocarcinoma,0,2 EGR4 NM_001965 exon2 c.C861T p.P287P GAGGCCGGGCTTG . 111.0 61.0 144.0 0.0 . 52 . . Atlas-SNP ATOH8 84913 hgsc.bcm.edu hg19 2 85981926 85981926 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ATOH8 NM_032827 exon1 c.A614G p.D205G ACCAGGATTCCTC . 157.0 88.0 161.0 0.0 . 15 . . Atlas-SNP CERKL 375298 hgsc.bcm.edu hg19 2 182468567 182468567 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CERKL NM_001160277 exon2 c.G478A p.A160T TACCTGCCAATAT . 101.0 29.0 133.0 0.0 . 138 . . Atlas-SNP RQCD1 9125 hgsc.bcm.edu hg19 2 219447779 219447779 + Missense_Mutation SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . RQCD1 NM_001271634 exon3 c.T290C p.L97P CATTACTGCAATG . 133.0 69.0 125.0 0.0 . 32 . . Atlas-SNP COL4A4 1286 hgsc.bcm.edu hg19 2 228009257 228009257 + Missense_Mutation SNP A A C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . COL4A4 NM_000092 exon3 c.T89G p.L30R GAAAAGAGAATGA . 932.0 550.0 1177.0 0.0 . 215 . . Atlas-SNP CNTN6 27255 hgsc.bcm.edu hg19 3 1414520 1414520 + Splice_Site SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 CNTN6,NS,malignant_melanoma,0,1 CNTN6 NM_014461 exon14 c.1669-2A>T . GTCTGCAGGAATC . 68.0 16.0 67.0 0.0 . 245 . . Atlas-SNP CMTM7 112616 hgsc.bcm.edu hg19 3 32433454 32433454 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CMTM7 NM_138410 exon1 c.G56A p.G19E CGCTCGGACCCGG . 27.0 10.0 30.0 0.0 . 14 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266101 41266101 + Missense_Mutation SNP C C T rs121913400 bycluster TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 CTNNB1,gallbladder,other,0,359 CTNNB1 NM_001098209 exon3 c.C98T p.S33F TGGACTCTGGAAT . 148.0 50.0 220.0 1.0 . 4904 . . Atlas-SNP CCR5 1234 hgsc.bcm.edu hg19 3 46415374 46415374 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CCR5 NM_000579 exon3 c.C981T p.F327F TATTTTCCAGCAA . 109.0 71.0 96.0 0.0 . 128 . . Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52554832 52554832 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . STAB1 NM_015136 exon55 c.G5719T p.A1907S CCTGAGGCCTGCT . 33.0 14.0 69.0 0.0 . 178 . . Atlas-SNP APPL1 26060 hgsc.bcm.edu hg19 3 57282291 57282291 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . APPL1 NM_012096 exon10 c.G775T p.D259Y GCCAGTGATCCCT . 267.0 168.0 263.0 0.0 . 59 . . Atlas-SNP TMEM39A 55254 hgsc.bcm.edu hg19 3 119155803 119155803 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TMEM39A NM_018266 exon7 c.G947T p.R316L GACCAGCGCATGT . 110.0 23.0 124.0 0.0 . 36 . . Atlas-SNP STXBP5L 9515 hgsc.bcm.edu hg19 3 121126301 121126301 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . STXBP5L NM_014980 exon24 c.A2871T p.Q957H AAAACAAGCCAAA . 126.0 31.0 149.0 0.0 . 159 . . Atlas-SNP EFCC1 79825 hgsc.bcm.edu hg19 3 128720898 128720898 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_024768 exon1 c.C427T p.R143C ACCTTCCGCCAGT . 79.0 29.0 113.0 0.0 . . . . Atlas-SNP PLS1 5357 hgsc.bcm.edu hg19 3 142388377 142388377 + Missense_Mutation SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PLS1 NM_001172312 exon3 c.T216G p.S72R AATCAGTTTTGAA . 125.0 7.0 118.0 0.0 . 71 . . Atlas-SNP RAP2B 5912 hgsc.bcm.edu hg19 3 152880629 152880629 + Silent SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . RAP2B NM_002886 exon1 c.G147T p.S49S CTCGTCGCCGTCG . 137.0 40.0 138.0 0.0 . 20 . . Atlas-SNP FXR1 8087 hgsc.bcm.edu hg19 3 180652981 180652981 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . FXR1 NM_001013438 exon3 c.G160T p.D54Y CCACCTGATATAA . 256.0 129.0 358.0 0.0 . 75 . . Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151773243 151773243 + Missense_Mutation SNP G G C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LRBA NM_006726 exon23 c.C3619G p.Q1207E GCATCTGACCAAG . 67.0 23.0 127.0 0.0 . 253 . . Atlas-SNP SPEF2 79925 hgsc.bcm.edu hg19 5 35700832 35700832 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 SPEF2_ENST00000356031,NS,carcinoma,0,1 SPEF2 NM_024867 exon16 c.G2376A p.M792I CTCAATGAGTCGC . 127.0 24.0 115.0 0.0 . 324 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60827372 60827372 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZSWIM6 NM_020928 exon9 c.A2065T p.T689S TATTTAACGCTGG . 254.0 114.0 204.0 0.0 . 51 . . Atlas-SNP REEP2 51308 hgsc.bcm.edu hg19 5 137780496 137780496 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . REEP2 NM_016606 exon5 c.G357A p.M119I CATGATGAGGGTG . 164.0 29.0 136.0 0.0 . 21 . . Atlas-SNP NDUFA2 4695 hgsc.bcm.edu hg19 5 140027159 140027159 + Missense_Mutation SNP C C T rs370015250 TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NDUFA2 NM_001185012 exon1 c.G10A p.A4T CTGCGGCCGCCGC . 67.0 37.0 51.0 0.0 . 13 . . Atlas-SNP PCDHGA12 26025 hgsc.bcm.edu hg19 5 140810476 140810476 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PCDHGA12 NM_032094 exon1 c.G150A p.R50R CTCCAGGGACCTG . 308.0 145.0 254.0 0.0 . 271 . . Atlas-SNP PPP2R2B 5521 hgsc.bcm.edu hg19 5 146258290 146258290 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PPP2R2B NM_181675 exon1 c.T58A p.C20S ACTCGCAGCTGCT . 12.0 4.0 4.0 0.0 . 271 . . Atlas-SNP GLRA1 2741 hgsc.bcm.edu hg19 5 151271886 151271886 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . GLRA1 NM_000171 exon2 c.G170T p.R57M TTGGGCCTGATCC . 167.0 81.0 132.0 0.0 . 61 . . Atlas-SNP HAND1 9421 hgsc.bcm.edu hg19 5 153857306 153857306 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . HAND1 NM_004821 exon1 c.T263A p.L88H CCGCCAAGCGCCT . 65.0 38.0 59.0 0.0 . 21 . . Atlas-SNP CANX 821 hgsc.bcm.edu hg19 5 179146764 179146764 + Missense_Mutation SNP C C G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CANX NM_001746 exon9 c.C1007G p.A336G CAGACGCAGAGAA . 270.0 113.0 237.0 0.0 . 47 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56505183 56505183 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DST NM_001723 exon4 c.C637T p.L213L ATGACAGGCCAGA . 213.0 106.0 153.0 0.0 . 1427 . . Atlas-SNP GPR63 81491 hgsc.bcm.edu hg19 6 97247593 97247593 + Silent SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . GPR63 NM_030784 exon2 c.A15T p.A5A CAACACTGCCGAG . 87.0 74.0 104.0 0.0 . 60 . . Atlas-SNP ALDH8A1 64577 hgsc.bcm.edu hg19 6 135239910 135239910 + Silent SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ALDH8A1 NM_022568 exon7 c.A1107G p.A369A GTAGCCTGCCTGG . 72.0 61.0 116.0 0.0 . 68 . . Atlas-SNP CCDC170 80129 hgsc.bcm.edu hg19 6 151936741 151936741 + Missense_Mutation SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_025059 exon10 c.T1874C p.M625T GAAACATGATAGA . 220.0 192.0 347.0 0.0 . . . . Atlas-SNP FNDC1 84624 hgsc.bcm.edu hg19 6 159642682 159642682 + Silent SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . FNDC1 NM_032532 exon6 c.G720T p.R240R GGGCCGGAGCCAA . 57.0 50.0 103.0 0.0 . 250 . . Atlas-SNP PRR18 285800 hgsc.bcm.edu hg19 6 166721359 166721359 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PRR18 NM_175922 exon1 c.C272T p.A91V GGCGGGGCGCACG . 35.0 19.0 13.0 0.0 . 4 . . Atlas-SNP WDR27 253769 hgsc.bcm.edu hg19 6 170043854 170043854 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . WDR27 NM_182552 exon17 c.G1686T p.L562F GTTGGCCAACCCA . 91.0 39.0 115.0 0.0 . 129 . . Atlas-SNP MTERF 7978 hgsc.bcm.edu hg19 7 91503579 91503579 + Nonsense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . MTERF NM_006980 exon3 c.G529T p.E177X TATTCTCTAAGTT . 204.0 58.0 140.0 0.0 . 32 . . Atlas-SNP STAG3 10734 hgsc.bcm.edu hg19 7 99797925 99797925 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . STAG3 NM_012447 exon17 c.C1744T p.P582S CTCATCCCCCTGC . 132.0 28.0 95.0 0.0 . 121 . . Atlas-SNP GPR37 2861 hgsc.bcm.edu hg19 7 124404436 124404436 + Nonsense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . GPR37 NM_005302 exon1 c.A595T p.K199X CCGTCTTGGACAG . 105.0 44.0 116.0 0.0 . 89 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241035 131241035 + Silent SNP C C G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PODXL NM_001018111 exon1 c.G84C p.P28P GGGCGACGGCGAC . 106.0 8.0 67.0 0.0 . 53 . . Atlas-SNP CRYGN 155051 hgsc.bcm.edu hg19 7 151127230 151127230 + Missense_Mutation SNP G G C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CRYGN NM_144727 exon4 c.C453G p.F151L CAGCTGGAAGTCC . 140.0 59.0 136.0 0.0 . 15 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 3046418 3046418 + Silent SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CSMD1 NM_033225 exon35 c.G5514T p.S1838S AATTCCCGAGCCC . 136.0 85.0 141.0 0.0 . 1469 . . Atlas-SNP LZTS1 11178 hgsc.bcm.edu hg19 8 20110855 20110855 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LZTS1 NM_021020 exon2 c.T587A p.L196Q GTGACCAGCGGGT . 58.0 9.0 83.0 0.0 . 72 . . Atlas-SNP ELP3 55140 hgsc.bcm.edu hg19 8 27957343 27957343 + Splice_Site SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ELP3 NM_018091 exon3 c.120-2A>T . ACTTTCAGGGTGA . 71.0 44.0 71.0 0.0 . 36 . . Atlas-SNP CPA6 57094 hgsc.bcm.edu hg19 8 68430279 68430279 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 CPA6,right_upper_lobe,carcinoma,0,1 CPA6 NM_020361 exon3 c.G196A p.D66N ACAGGTCCACCTG . 171.0 34.0 168.0 0.0 . 69 . . Atlas-SNP PRDM14 63978 hgsc.bcm.edu hg19 8 70970978 70970978 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PRDM14 NM_024504 exon6 c.G1283T p.G428V CTATCGCCCTTGT . 123.0 61.0 110.0 0.0 . 102 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141678423 141678423 + Missense_Mutation SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PTK2 NM_005607 exon30 c.A2876C p.E959A GACATCTCGATGA . 142.0 40.0 158.0 0.0 . 311 . . Atlas-SNP MAFA 389692 hgsc.bcm.edu hg19 8 144512551 144512551 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . MAFA NM_201589 exon1 c.C26A p.A9D AGCTCGGCGCCCA . 41.0 11.0 43.0 0.0 . 9 . . Atlas-SNP NRBP2 340371 hgsc.bcm.edu hg19 8 144917879 144917879 + Missense_Mutation SNP C C T rs372417243 TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NRBP2 NM_178564 exon18 c.G1459A p.A487T GGAAGGCGGCCAG . 103.0 28.0 138.0 0.0 . 20 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35399446 35399446 + Splice_Site SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . UNC13B NM_006377 exon34 c.4008+1G>A . CTCAAGGTACTCT . 50.0 33.0 65.0 0.0 . 153 . . Atlas-SNP TLE1 7088 hgsc.bcm.edu hg19 9 84268953 84268953 + Splice_Site SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TLE1 NM_005077 exon6 c.235-2A>T . TCAGTCTATAAAG . 69.0 38.0 87.0 0.0 . 81 . . Atlas-SNP CTSL1 1514 hgsc.bcm.edu hg19 9 90342523 90342523 + Missense_Mutation SNP A A G rs112682750 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CTSL1 NM_145918 exon2 c.A5G p.N2S ACATGAATCCTAC . 115.0 39.0 91.0 0.0 . 43 . A|0.996;C|0.004 Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100105753 100105753 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_020893 exon19 c.C2538T p.T846T TTCCACCTTCTCA . 102.0 24.0 132.0 0.0 . . . . Atlas-SNP ANKS6 203286 hgsc.bcm.edu hg19 9 101539738 101539738 + Splice_Site SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ANKS6 NM_173551 exon9 c.1568-2A>T . AGGACCTGAGAGA . 116.0 45.0 132.0 0.0 . 59 . . Atlas-SNP ZNF462 58499 hgsc.bcm.edu hg19 9 109687122 109687122 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZNF462 NM_021224 exon3 c.G929A p.R310Q CAAGCCGGGAGAT . 160.0 36.0 177.0 0.0 . 322 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137658880 137658880 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . COL5A1 NM_000093 exon23 c.A2168T p.Q723L GACAGCAGGGTAA . 118.0 35.0 159.0 0.0 . 323 . . Atlas-SNP NELFB 25920 hgsc.bcm.edu hg19 9 140151494 140151494 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_015456 exon4 c.G585T p.R195S GACCAGGCGCCAG . 37.0 21.0 49.0 0.0 . . . . Atlas-SNP SFMBT2 57713 hgsc.bcm.edu hg19 10 7409744 7409744 + Silent SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SFMBT2 NM_001029880 exon4 c.G303T p.G101G CAGCTGCCCGCAC . 141.0 29.0 153.0 0.0 . 209 . . Atlas-SNP SLC39A12 221074 hgsc.bcm.edu hg19 10 18254573 18254573 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SLC39A12 NM_152725 exon4 c.A705T p.E235D TACAGAATATATT . 127.0 64.0 113.0 0.0 . 181 . . Atlas-SNP ANKRD30A 91074 hgsc.bcm.edu hg19 10 37507926 37507926 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ANKRD30A NM_052997 exon34 c.A3118T p.N1040Y CATGAAAATGAAA . 406.0 197.0 315.0 0.0 . 448 . . Atlas-SNP RTKN2 219790 hgsc.bcm.edu hg19 10 63957897 63957897 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . RTKN2 NM_145307 exon12 c.A1600T p.S534C ATACACTTGTTTT . 204.0 80.0 170.0 0.0 . 68 . . Atlas-SNP CPEB3 22849 hgsc.bcm.edu hg19 10 93841114 93841114 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CPEB3 NM_014912 exon9 c.G1832A p.R611H ACAAAACGAGCGC . 118.0 6.0 98.0 0.0 . 43 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 514.0 21.0 428.0 0.0 . 101 . . Atlas-SNP CTSD 1509 hgsc.bcm.edu hg19 11 1785050 1785050 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CTSD NM_001909 exon1 c.C40T p.L14L CAGCCAGCAGGCA . 60.0 42.0 82.0 0.0 . 26 . . Atlas-SNP OSBPL5 114879 hgsc.bcm.edu hg19 11 3113775 3113775 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . OSBPL5 NM_020896 exon19 c.G2146T p.D716Y GGGGGTCCCAGGG . 79.0 27.0 106.0 0.0 . 78 . . Atlas-SNP SLC17A6 57084 hgsc.bcm.edu hg19 11 22396318 22396318 + Silent SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SLC17A6 NM_020346 exon9 c.T1059A p.A353A ATCTGCTGTGCCA . 79.0 44.0 94.0 0.0 . 135 . . Atlas-SNP MMP8 4317 hgsc.bcm.edu hg19 11 102595576 102595576 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . MMP8 NM_002424 exon1 c.T11A p.L4Q GTCTTCAGGGAGA . 278.0 95.0 314.0 1.0 . 68 . . Atlas-SNP ARHGAP20 57569 hgsc.bcm.edu hg19 11 110450147 110450147 + Missense_Mutation SNP C C G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ARHGAP20 NM_020809 exon16 c.G3523C p.G1175R TAGGCCCTGAGTC . 97.0 49.0 94.0 0.0 . 150 . . Atlas-SNP STT3A 3703 hgsc.bcm.edu hg19 11 125472792 125472792 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . STT3A NM_152713 exon5 c.C366T p.L122L CCCTCTCTTCTCC . 143.0 31.0 135.0 0.0 . 52 . . Atlas-SNP KCNA6 3742 hgsc.bcm.edu hg19 12 4920532 4920532 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . KCNA6 NM_002235 exon1 c.G1325T p.C442F CGCTGTGTGCCAT . 154.0 40.0 121.0 0.0 . 122 . . Atlas-SNP NCAPD2 9918 hgsc.bcm.edu hg19 12 6635520 6635520 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NCAPD2 NM_014865 exon20 c.G2549A p.R850Q GACTGCGGGAGAC . 119.0 20.0 120.0 0.0 . 99 . . Atlas-SNP A2ML1 144568 hgsc.bcm.edu hg19 12 9027081 9027081 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . A2ML1 NM_144670 exon34 c.T4282A p.L1428M ACCAACTTGAAAC . 85.0 34.0 85.0 0.0 . 199 . . Atlas-SNP CCER1 196477 hgsc.bcm.edu hg19 12 91348095 91348095 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 C12orf12,NS,carcinoma,0,1 . NM_152638 exon1 c.G425A p.R142H CCCCAGCGCTTCT . 30.0 13.0 34.0 0.0 . . . . Atlas-SNP NR1H4 9971 hgsc.bcm.edu hg19 12 100926383 100926383 + Missense_Mutation SNP A A C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NR1H4 NM_001206993 exon3 c.A623C p.Y208S GTATGTATACAGG . 168.0 93.0 135.0 0.0 . 145 . . Atlas-SNP NUP37 79023 hgsc.bcm.edu hg19 12 102512142 102512142 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NUP37 NM_024057 exon1 c.A155T p.Q52L CTAACCTGAAACG . 153.0 53.0 117.0 0.0 . 26 . . Atlas-SNP ANKRD13A 88455 hgsc.bcm.edu hg19 12 110456257 110456257 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ANKRD13A NM_033121 exon5 c.A508G p.I170V AGCTGGATAAGAG . 251.0 105.0 222.0 0.0 . 39 . . Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112942513 112942513 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PTPN11 NM_002834 exon15 c.G1727T p.S576I AAGACAGTGCTAG . 497.0 210.0 406.0 0.0 . 623 . . Atlas-SNP CCDC169 728591 hgsc.bcm.edu hg19 13 36871783 36871783 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CCDC169 NM_001144981 exon1 c.T74A p.V25D TTGCGGACTTCTT . 26.0 15.0 34.0 0.0 . 20 . . Atlas-SNP CCNA1 8900 hgsc.bcm.edu hg19 13 37012886 37012886 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CCNA1 NM_003914 exon5 c.A775G p.K259E GAATATAAACTTC . 125.0 53.0 231.0 0.0 . 91 . . Atlas-SNP POSTN 10631 hgsc.bcm.edu hg19 13 38159034 38159034 + Silent SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . POSTN NM_006475 exon8 c.C927A p.L309L ACACTGGAGAGTA . 40.0 21.0 91.0 0.0 . 161 . . Atlas-SNP AJUBA 84962 hgsc.bcm.edu hg19 14 23444239 23444239 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_032876 exon5 c.C1314T p.G438G GGGGATGCCATCC . 82.0 26.0 75.0 0.0 . . . . Atlas-SNP HEATR5A 25938 hgsc.bcm.edu hg19 14 31814462 31814462 + Silent SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . HEATR5A NM_015473 exon20 c.A2889G p.L963L CAATGATAGAGAA . 125.0 44.0 107.0 0.0 . 181 . . Atlas-SNP CTAGE5 4253 hgsc.bcm.edu hg19 14 39819413 39819413 + Missense_Mutation SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CTAGE5 NM_001247989 exon24 c.T2375G p.I792S GTTTGATTCCACC . 157.0 88.0 187.0 0.0 . 75 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94088968 94088968 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . UNC79 NM_020818 exon30 c.C4858A p.P1620T GAGAACCCCACAG . 200.0 60.0 218.0 0.0 . 366 . . Atlas-SNP TRPM1 4308 hgsc.bcm.edu hg19 15 31323191 31323191 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TRPM1 NM_001252020 exon22 c.T3173C p.I1058T CGGTCTATCTGGT . 133.0 81.0 123.0 0.0 . 183 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48829987 48829987 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . FBN1 NM_000138 exon7 c.G557A p.C186Y GTAAAACATGGGC . 114.0 7.0 116.0 0.0 . 310 . . Atlas-SNP LARP6 55323 hgsc.bcm.edu hg19 15 71124522 71124522 + Missense_Mutation SNP C C T rs146941351 alternate_allele TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LARP6 NM_018357 exon3 c.G1345A p.G449S TCGTACCGGGGCT . 102.0 35.0 129.0 0.0 . 43 . C|1.000;A|0.000 Atlas-SNP NEO1 4756 hgsc.bcm.edu hg19 15 73541947 73541947 + Silent SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NEO1 NM_001172623 exon11 c.T1779G p.S593S TCACTCTTACACC . 121.0 34.0 134.0 0.0 . 102 . . Atlas-SNP AXIN1 8312 hgsc.bcm.edu hg19 16 396840 396840 + Missense_Mutation SNP C C A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . AXIN1 NM_181050 exon2 c.G186T p.R62S CGAGCGCCTCGGA . 35.0 17.0 86.0 0.0 . 290 . . Atlas-SNP SSTR5 6755 hgsc.bcm.edu hg19 16 1129724 1129724 + Missense_Mutation SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SSTR5 NM_001172560 exon2 c.T856C p.Y286H GGCCTCTACTTCT . 48.0 22.0 63.0 0.0 . 36 . . Atlas-SNP IL21R 50615 hgsc.bcm.edu hg19 16 27448987 27448987 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . IL21R NM_181079 exon5 c.A397T p.S133C TGTGGCAGCTTTC . 52.0 27.0 78.0 0.0 . 95 . . Atlas-SNP LONP2 83752 hgsc.bcm.edu hg19 16 48295405 48295405 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LONP2 NM_031490 exon5 c.A794T p.E265V AAGATGAAGATAA . 174.0 67.0 296.0 0.0 . 63 . . Atlas-SNP NLRC5 84166 hgsc.bcm.edu hg19 16 57062007 57062007 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NLRC5 NM_032206 exon6 c.A2099G p.D700G GTGGGGATGCCTT . 38.0 21.0 70.0 0.0 . 186 . . Atlas-SNP ENO3 2027 hgsc.bcm.edu hg19 17 4857083 4857083 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ENO3 NM_001976 exon6 c.C387T p.P129P GGTCCCCCTGTAC . 68.0 15.0 118.0 0.0 . 36 . . Atlas-SNP SLC35G6 643664 hgsc.bcm.edu hg19 17 7385340 7385340 + Missense_Mutation SNP T T G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_001102614 exon2 c.T37G p.S13A CCTGACTCCACAC . 88.0 52.0 81.0 0.0 . . . . Atlas-SNP SLC35G6 643664 hgsc.bcm.edu hg19 17 7385382 7385382 + Missense_Mutation SNP T T C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_001102614 exon2 c.T79C p.W27R CTCCGCTGGCACC . 81.0 48.0 71.0 0.0 . . . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11593507 11593507 + Silent SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 DNAH9,NS,carcinoma,0,1 DNAH9 NM_001372 exon20 c.G4368A p.R1456R CCCACGGACCAAT . 119.0 47.0 116.0 0.0 . 695 . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11833232 11833232 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DNAH9 NM_001372 exon63 c.A11927T p.E3976V AGCTGGAGGAGCA . 154.0 44.0 144.0 0.0 . 695 . . Atlas-SNP PPP1R1B 84152 hgsc.bcm.edu hg19 17 37791873 37791873 + Silent SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PPP1R1B NM_032192 exon6 c.A459T p.T153T AAAGACAACCTGT . 106.0 45.0 107.0 0.0 . 9 . . Atlas-SNP KRT9 3857 hgsc.bcm.edu hg19 17 39726458 39726458 + Silent SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . KRT9 NM_000226 exon2 c.A657T p.T219T GCCCACTGTCAGG . 116.0 36.0 145.0 0.0 . 78 . . Atlas-SNP KCNH4 23415 hgsc.bcm.edu hg19 17 40330239 40330239 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . KCNH4 NM_012285 exon4 c.C464A p.S155Y CCAAGGGAGTTTT . 85.0 50.0 91.0 0.0 . 105 . . Atlas-SNP ZNF556 80032 hgsc.bcm.edu hg19 19 2877959 2877959 + Nonsense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZNF556 NM_024967 exon4 c.A1003T p.R335X CACGCGAGAACGC . 127.0 69.0 154.0 0.0 . 73 . . Atlas-SNP NMRK2 27231 hgsc.bcm.edu hg19 19 3942230 3942230 + Missense_Mutation SNP A A G rs143940174 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . NM_170678 exon8 c.A652G p.R218G GGCCACAGAACGG . 93.0 30.0 89.0 0.0 . . . A|0.999;C|0.001 Atlas-SNP SH2D3A 10045 hgsc.bcm.edu hg19 19 6755305 6755305 + Missense_Mutation SNP G G C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . SH2D3A NM_005490 exon5 c.C518G p.S173C AAGGCAGATATGG . 143.0 50.0 155.0 0.0 . 53 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9066432 9066432 + Missense_Mutation SNP A A C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . MUC16 NM_024690 exon3 c.T21014G p.L7005W TCTGGCAAAACTG . 117.0 36.0 106.0 0.0 . 4315 . . Atlas-SNP INSL3 3640 hgsc.bcm.edu hg19 19 17932271 17932271 + Silent SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . INSL3 NM_005543 exon1 c.T45A p.P15P CAGGGCAGGGCCC . 153.0 79.0 166.0 0.0 . 8 . . Atlas-SNP KCNN1 3780 hgsc.bcm.edu hg19 19 18092673 18092673 + Silent SNP G G T rs371311512 alternate_allele TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . KCNN1 NM_002248 exon5 c.G654T p.A218A GTACGCGCCCTCG . 71.0 20.0 71.0 0.0 . 74 . . Atlas-SNP ZNF90 7643 hgsc.bcm.edu hg19 19 20228890 20228890 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZNF90 NM_007138 exon4 c.T527A p.I176K AATGTATAGAATG . 162.0 7.0 151.0 0.0 . 93 . . Atlas-SNP UPK1A 11045 hgsc.bcm.edu hg19 19 36166776 36166776 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . UPK1A NM_007000 exon5 c.G503T p.W168L TGGACTGGGTGAA . 43.0 12.0 54.0 0.0 . 23 . . Atlas-SNP ZNF382 84911 hgsc.bcm.edu hg19 19 37117233 37117233 + Missense_Mutation SNP A A G novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZNF382 NM_032825 exon5 c.A434G p.N145S TGAAAAATATTTC . 326.0 194.0 406.0 0.0 . 87 . . Atlas-SNP GRIK5 2901 hgsc.bcm.edu hg19 19 42507596 42507596 + Missense_Mutation SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . GRIK5 NM_002088 exon18 c.T2402A p.M801K TTCTCCATGCCCA . 103.0 63.0 108.0 0.0 . 220 . . Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54393251 54393251 + Missense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PRKCG NM_002739 exon5 c.C509T p.A170V CCACAGCAGATGA . 76.0 18.0 93.0 0.0 . 246 . . Atlas-SNP ATRN 8455 hgsc.bcm.edu hg19 20 3619493 3619493 + Nonsense_Mutation SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ATRN NM_139321 exon27 c.C3961T p.Q1321X GAGATGCAACAGA . 96.0 43.0 82.0 0.0 . 118 . . Atlas-SNP DHX35 60625 hgsc.bcm.edu hg19 20 37647529 37647529 + Missense_Mutation SNP G G C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DHX35 NM_021931 exon15 c.G1485C p.M495I CAAAATGCTGCTT . 126.0 64.0 110.0 0.0 . 82 . . Atlas-SNP OSBPL2 9885 hgsc.bcm.edu hg19 20 60854388 60854388 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . OSBPL2 NM_144498 exon7 c.C667T p.L223L CTGGAGCTGCTCA . 114.0 48.0 103.0 0.0 . 51 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32266715 32266715 + Missense_Mutation SNP A A C novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DEPDC5 NM_001242896 exon34 c.A3470C p.N1157T CCACAAACTCCAG . 139.0 8.0 138.0 0.0 . 266 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38121212 38121212 + Silent SNP C C T rs374255684 alternate_allele TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TRIOBP NM_001039141 exon7 c.C2649T p.P883P ATCTCCCCACCGC . 149.0 42.0 160.0 0.0 . 262 . . Atlas-SNP DDX17 10521 hgsc.bcm.edu hg19 22 38888102 38888102 + Missense_Mutation SNP G G T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DDX17 NM_006386 exon11 c.C1406A p.A469E ATGGGTGCCTTTC . 94.0 4.0 113.0 0.0 . 73 . . Atlas-SNP ASMTL 8623 hgsc.bcm.edu hg19 X 1571669 1571669 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ASMTL NM_001173474 exon1 c.C65T p.P22L CGGCGTGGGGAGG . 65.0 17.0 58.0 0.0 . 56 . . Atlas-SNP ZBED1 9189 hgsc.bcm.edu hg19 X 2408474 2408474 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ZBED1 NM_001171135 exon2 c.A287T p.K96M TTCAGCTTGGAGA . 185.0 56.0 231.0 0.0 . 64 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12903873 12903873 + Silent SNP A A T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TLR7 NM_016562 exon3 c.A246T p.P82P CTCCCCAGCGTCC . 215.0 201.0 178.0 0.0 . 125 . . Atlas-SNP DDX53 168400 hgsc.bcm.edu hg19 X 23019572 23019572 + Silent SNP C C T novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . DDX53 NM_182699 exon1 c.C1398T p.P466P GTCACCCAACGAC . 202.0 10.0 169.0 0.0 . 76 . . Atlas-SNP LANCL3 347404 hgsc.bcm.edu hg19 X 37431397 37431397 + Missense_Mutation SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LANCL3 NM_001170331 exon1 c.T274A p.Y92N GAACGCTACCTGC . 36.0 33.0 36.0 0.0 . 42 . . Atlas-SNP TSPYL2 64061 hgsc.bcm.edu hg19 X 53112112 53112112 + Silent SNP G G A rs376774006 TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TSPYL2 NM_022117 exon1 c.G432A p.G144G AGAGGGGGCCCTA . 191.0 11.0 145.0 0.0 . 53 . . Atlas-SNP LRCH2 57631 hgsc.bcm.edu hg19 X 114414316 114414316 + Splice_Site SNP T T A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . LRCH2 NM_001243963 exon5 c.622-2A>T . ATATCCTAAGGAG . 253.0 235.0 207.0 0.0 . 138 . . Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 9178 9178 + Missense_Mutation SNP G G A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . . ENST00000361899 exon1 c.G652A p.V218M CTTCTAGTAAGCC . 63.0 10.0 59.0 0.0 . . . . Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64239248 64239248 + Frame_Shift_Del DEL T T - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CDH19 NM_021153 exon2 c.195delG p.Q65fs . . 80.0 27.0 84.0 0.0 . 141 . . Atlas-INDEL PGS1 9489 hgsc.bcm.edu hg19 17 76374876 76374894 + In_Frame_Del DEL CGCCAGCGCAGGAGGTGAG CGCCAGCGCAGGAGGTGAG - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 CGCCAGCGCAGGAGGTGAG CGCCAGCGCAGGAGGTGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PGS1 NM_024419 exon1 c.129_143del p.43_48del . . 55.0 33.0 68.0 0.0 . 30 . . Atlas-INDEL NAIP 4671 hgsc.bcm.edu hg19 5 70280580 70280583 + Frame_Shift_Del DEL CCTG CCTG - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 CCTG CCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . NAIP NM_004536 exon12 c.2294_2297del p.765_766del . . 84.0 17.0 189.0 0.0 . 38 . . Atlas-INDEL ARID1A 8289 hgsc.bcm.edu hg19 1 27107072 27107075 + Frame_Shift_Del DEL TGGA TGGA - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 TGGA TGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ARID1A NM_006015 exon20 c.6682_6685del p.2228_2229del . . 28.0 18.0 92.0 0.0 . 842 . . Atlas-INDEL OR4A47 403253 hgsc.bcm.edu hg19 11 48510756 48510757 + Frame_Shift_Del DEL GT GT - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . OR4A47 NM_001005512 exon1 c.411_412del p.137_138del . . 88.0 23.0 74.0 0.0 . 72 . . Atlas-INDEL MAP1S 55201 hgsc.bcm.edu hg19 19 17838628 17838629 + Frame_Shift_Del DEL AC AC - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . MAP1S NM_018174 exon5 c.2434_2435del p.812_812del . . 119.0 34.0 119.0 0.0 . 74 . . Atlas-INDEL ARID1A 8289 hgsc.bcm.edu hg19 1 27107078 27107095 + In_Frame_Del DEL TGATGCGGCGGGCTGCCC TGATGCGGCGGGCTGCCC - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 TGATGCGGCGGGCTGCCC TGATGCGGCGGGCTGCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . ARID1A NM_006015 exon20 c.6688_6705del p.2230_2235del . . 26.0 18.0 89.0 0.0 . 842 . . Atlas-INDEL EPG5 57724 hgsc.bcm.edu hg19 18 43462411 43462412 + Frame_Shift_Ins INS - - A novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . EPG5 NM_020964 exon31 c.5346_5347insT p.L1782fs . . 168.0 49.0 192.0 0.0 . 199 . . Atlas-INDEL TTN 7273 hgsc.bcm.edu hg19 2 179399523 179399542 + Frame_Shift_Del DEL ATGTCAAAGTGTCCAATATT ATGTCAAAGTGTCCAATATT - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 ATGTCAAAGTGTCCAATATT ATGTCAAAGTGTCCAATATT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . TTN NM_001267550 exon358 c.101801_101820del p.33934_33940del . . 46.0 10.0 49.0 0.0 . 18412 . . Atlas-INDEL CCDC71L 168455 hgsc.bcm.edu hg19 7 106301219 106301220 + Frame_Shift_Del DEL AC AC - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . CCDC71L NM_175884 exon1 c.124_125del p.42_42del . . 111.0 36.0 90.0 0.0 . 2 . . Atlas-INDEL FLRT2 23768 hgsc.bcm.edu hg19 14 86089243 86089243 + Frame_Shift_Del DEL T T - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . FLRT2 NM_013231 exon2 c.1384delG p.V462X . . 127.0 71.0 141.0 0.0 . 168 . . Atlas-INDEL PI4K2A 55361 hgsc.bcm.edu hg19 10 99433469 99433492 + In_Frame_Del DEL GAGCCGGAAGCCCTTCTTTTCATG GAGCCGGAAGCCCTTCTTTTCATG - novel TCGA-XR-A8TF-01A-11D-A35Z-10 TCGA-XR-A8TF-10A-01D-A35Z-10 GAGCCGGAAGCCCTTCTTTTCATG GAGCCGGAAGCCCTTCTTTTCATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ff0de221-788c-40f3-ba51-eb71a52ccfa5 bf67ce8b-0bd6-4d14-9747-17eb2471d622 . PI4K2A NM_018425 exon9 c.1409_1432del p.470_478del . . 83.0 16.0 66.0 0.0 . 57 . . Atlas-INDEL