Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PER3 8863 hgsc.bcm.edu hg19 1 7887311 7887311 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PER3 NM_016831 exon17 c.C2298T p.N766N TCAGAACGCACAG . 115.0 23.0 158.0 0.0 . 95 . . Atlas-SNP TMEM51 55092 hgsc.bcm.edu hg19 1 15541785 15541785 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMEM51 NM_018022 exon2 c.G202A p.V68M GCCTACGTGCTGG . 50.0 6.0 64.0 0.0 . 28 . . Atlas-SNP C1orf63 57035 hgsc.bcm.edu hg19 1 25571731 25571731 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C1orf63 NM_020317 exon3 c.C582T p.N194N GTCAATGTTGGTT . 55.0 7.0 67.0 0.0 . 17 . . Atlas-SNP SLC9A1 6548 hgsc.bcm.edu hg19 1 27440501 27440501 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC9A1 NM_003047 exon2 c.C629T p.A210V CACACGGCGTACA . 93.0 25.0 87.0 0.0 . 68 . . Atlas-SNP BAI2 576 hgsc.bcm.edu hg19 1 32202242 32202242 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BAI2 NM_001703 exon21 c.C3062T p.S1021F AGGTAGGACTGCC . 133.0 10.0 168.0 0.0 . 128 . . Atlas-SNP TMEM48 55706 hgsc.bcm.edu hg19 1 54269665 54269665 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMEM48 NM_018087 exon10 c.C1002A p.D334E CATCAGGTCCTGC . 163.0 54.0 216.0 0.0 . 47 . . Atlas-SNP JUN 3725 hgsc.bcm.edu hg19 1 59247776 59247776 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . JUN NM_002228 exon1 c.A967G p.M323V TTAGCATGAGTTG . 87.0 33.0 131.0 0.0 . 26 . . Atlas-SNP C1orf87 127795 hgsc.bcm.edu hg19 1 60506733 60506733 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C1orf87 NM_152377 exon4 c.G413T p.G138V GGAATGCCATGCA . 177.0 79.0 205.0 0.0 . 55 . . Atlas-SNP IL12RB2 3595 hgsc.bcm.edu hg19 1 67852322 67852322 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IL12RB2 NM_001559 exon14 c.G1916A p.G639D TGGTGGGCATTTT . 123.0 54.0 172.0 0.0 . 94 . . Atlas-SNP HS2ST1 9653 hgsc.bcm.edu hg19 1 87563588 87563588 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da HS2ST1_ENST00000370548,NS,malignant_melanoma,+1,1 HS2ST1 NM_012262 exon5 c.C656A p.P219Q AAATCCCGTTCTT . 166.0 33.0 103.0 0.0 . 43 . . Atlas-SNP GBP7 388646 hgsc.bcm.edu hg19 1 89615112 89615112 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GBP7 NM_207398 exon7 c.G1015A p.A339T GCTGGGCCATCTG . 151.0 11.0 113.0 0.0 . 57 . . Atlas-SNP BARHL2 343472 hgsc.bcm.edu hg19 1 91182580 91182580 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BARHL2 NM_020063 exon1 c.T173C p.V58A GTCCCTACGGTAT . 253.0 23.0 137.0 0.0 . 62 . . Atlas-SNP CDC7 8317 hgsc.bcm.edu hg19 1 91985737 91985737 + Nonsense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CDC7 NM_001134419 exon11 c.C1231T p.R411X AGTGGACGATATC . 167.0 33.0 104.0 0.0 . 74 . . Atlas-SNP CHI3L2 1117 hgsc.bcm.edu hg19 1 111773538 111773538 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CHI3L2 NM_004000 exon3 c.A245G p.Y82C TGCTCTACCAGAC . 100.0 18.0 100.0 0.0 . 38 . . Atlas-SNP HSD3B1 3283 hgsc.bcm.edu hg19 1 120057162 120057162 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da HSD3B1,caecum,carcinoma,0,1 HSD3B1 NM_000862 exon4 c.C1016T p.A339V ATCTGGCGTATAA . 194.0 100.0 260.0 0.0 . 53 . . Atlas-SNP HMGCS2 3158 hgsc.bcm.edu hg19 1 120298061 120298061 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HMGCS2 NM_005518 exon6 c.G1176A p.S392S CAGAAGCGAGGCC . 126.0 22.0 132.0 0.0 . 58 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144882534 144882534 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PDE4DIP NM_014644 exon24 c.A3485G p.H1162R TCTTGGTGTTGGT . 199.0 17.0 165.0 0.0 . 817 . . Atlas-SNP PLEKHO1 51177 hgsc.bcm.edu hg19 1 150131092 150131092 + Missense_Mutation SNP T T G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PLEKHO1 NM_016274 exon6 c.T604G p.S202A CCAACCTCTTGTG . 157.0 28.0 122.0 0.0 . 37 . . Atlas-SNP CA14 23632 hgsc.bcm.edu hg19 1 150234003 150234003 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CA14 NM_012113 exon3 c.C222A p.T74T TGGCACCGAGCCT . 102.0 6.0 76.0 0.0 . 37 . . Atlas-SNP RPRD2 23248 hgsc.bcm.edu hg19 1 150444476 150444476 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RPRD2 NM_015203 exon11 c.C3052T p.R1018C GCCTCACGTAAGC . 286.0 33.0 204.0 0.0 . 189 . . Atlas-SNP KPRP 448834 hgsc.bcm.edu hg19 1 152732288 152732288 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KPRP NM_001025231 exon2 c.A224G p.Q75R AGTGCCAGTCTAA . 229.0 44.0 150.0 0.0 . 152 . . Atlas-SNP IVL 3713 hgsc.bcm.edu hg19 1 152882316 152882316 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IVL NM_005547 exon2 c.C43A p.L15I CCTGCCCTCAGTC . 131.0 27.0 77.0 0.0 . 100 . . Atlas-SNP INTS3 65123 hgsc.bcm.edu hg19 1 153744418 153744418 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . INTS3 NM_023015 exon26 c.G2699A p.S900N ACAACAGCCTGCC . 109.0 11.0 75.0 0.0 . 83 . . Atlas-SNP SHC1 6464 hgsc.bcm.edu hg19 1 154942720 154942720 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da SHC1_ENST00000448116,NS,carcinoma,0,1 SHC1 NM_183001 exon1 c.G283A p.V95I CCCCTACGATCCC . 294.0 33.0 209.0 0.0 . 91 . . Atlas-SNP ARHGEF2 9181 hgsc.bcm.edu hg19 1 155922509 155922509 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da ARHGEF2,NS,carcinoma,0,1 ARHGEF2 NM_001162383 exon15 c.G1894A p.A632T GCAGGGCCATCCC . 226.0 43.0 184.0 0.0 . 81 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156640020 156640020 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NES NM_006617 exon4 c.G3960A p.R1320R GGGTGGCCTCTGC . 97.0 6.0 46.0 0.0 . 196 . . Atlas-SNP IGSF9 57549 hgsc.bcm.edu hg19 1 159901663 159901663 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IGSF9 NM_001135050 exon11 c.G1301A p.R434Q AGCTCCCGCCCTA . 68.0 17.0 54.0 0.0 . 123 . . Atlas-SNP IGSF8 93185 hgsc.bcm.edu hg19 1 160062224 160062224 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IGSF8 NM_052868 exon5 c.G1574A p.R525Q TGGCTTCGGGGCC . 147.0 42.0 103.0 0.0 . 59 . . Atlas-SNP FCER1G 2207 hgsc.bcm.edu hg19 1 161188700 161188700 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FCER1G NM_004106 exon5 c.C228T p.Y76Y GACTTACGAGACT . 157.0 21.0 113.0 0.0 . 11 . . Atlas-SNP ILDR2 387597 hgsc.bcm.edu hg19 1 166890453 166890453 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ILDR2 NM_199351 exon9 c.C1375T p.R459C CCGAGCGCTCGAA . 76.0 28.0 37.0 0.0 . 79 . . Atlas-SNP ASTN1 460 hgsc.bcm.edu hg19 1 176926868 176926868 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ASTN1 NM_004319 exon11 c.C1833T p.C611C CTTACTGCAGCCC . 262.0 32.0 186.0 0.0 . 314 . . Atlas-SNP SEC16B 89866 hgsc.bcm.edu hg19 1 177902746 177902746 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SEC16B NM_033127 exon21 c.G2597A p.S866N GAAATACTTCGTG . 90.0 15.0 83.0 0.0 . 92 . . Atlas-SNP TOR3A 64222 hgsc.bcm.edu hg19 1 179054904 179054904 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TOR3A NM_022371 exon3 c.G515A p.G172D GCACAGGCAAGAA . 93.0 32.0 89.0 0.0 . 28 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179609580 179609580 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TDRD5 NM_173533 exon11 c.G1800T p.E600D AGTAGAGGTATGT . 126.0 15.0 79.0 0.0 . 149 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186076037 186076037 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da HMCN1,colon,carcinoma,-2,1 HMCN1 NM_031935 exon70 c.A10792G p.T3598A AGATATACATGTC . 123.0 19.0 87.0 0.0 . 797 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186135392 186135392 + Nonsense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HMCN1 NM_031935 exon99 c.C15396A p.C5132X CTCCTGCCCTAAA . 100.0 7.0 82.0 0.0 . 797 . . Atlas-SNP KCNT2 343450 hgsc.bcm.edu hg19 1 196274397 196274397 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KCNT2 NM_198503 exon22 c.C2562A p.D854E GTAACAGTCTTTG . 137.0 8.0 85.0 0.0 . 243 . . Atlas-SNP DENND1B 163486 hgsc.bcm.edu hg19 1 197704811 197704811 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DENND1B NM_001195216 exon3 c.C198T p.S66S TACCCCGGACACG . 85.0 17.0 66.0 0.0 . 108 . . Atlas-SNP CD55 1604 hgsc.bcm.edu hg19 1 207495135 207495135 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CD55 NM_001114752 exon1 c.C25T p.P9S AGCGTGCCCGCGG . 86.0 14.0 41.0 0.0 . 55 . . Atlas-SNP GPATCH2 55105 hgsc.bcm.edu hg19 1 217784290 217784290 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GPATCH2 NM_018040 exon4 c.C959A p.P320H AAGACAGGATCTG . 140.0 17.0 112.0 0.0 . 53 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220330778 220330778 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da RAB3GAP2,NS,carcinoma,+1,1 RAB3GAP2 NM_012414 exon31 c.C3389T p.A1130V AGCCACGCATCCT . 189.0 28.0 144.0 0.0 . 120 . . Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222721145 222721145 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HHIPL2 NM_024746 exon1 c.G242A p.R81Q CAGTACCGGGCAG . 180.0 16.0 137.0 0.0 . 122 . . Atlas-SNP PARP1 142 hgsc.bcm.edu hg19 1 226570848 226570848 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PARP1 NM_001618 exon8 c.G1048A p.V350I TTTTAACCTTCAA . 140.0 18.0 105.0 0.0 . 100 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228547615 228547615 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OBSCN NM_052843 exon81 c.C19022T p.P6341L TGGGCCCGCAGGG . 441.0 52.0 313.0 0.0 . 2142 . . Atlas-SNP ABCB10 23456 hgsc.bcm.edu hg19 1 229666151 229666151 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABCB10 NM_012089 exon8 c.G1440T p.G480G GATGACCCCCTCT . 82.0 14.0 73.0 0.0 . 71 . . Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240492397 240492397 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FMN2 NM_020066 exon9 c.G4237A p.E1413K GAACTCGAAAAAA . 341.0 34.0 237.0 0.0 . 451 . . Atlas-SNP OR1C1 26188 hgsc.bcm.edu hg19 1 247921056 247921056 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR1C1 NM_012353 exon1 c.A653G p.Y218C AGTCCATAAGATA . 160.0 40.0 128.0 0.0 . 86 . . Atlas-SNP OR2T4 127074 hgsc.bcm.edu hg19 1 248525091 248525091 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR2T4 NM_001004696 exon1 c.C209T p.A70V TGATGGCGTTGTC . 643.0 74.0 459.0 0.0 . 126 . . Atlas-SNP TRAPPC12 51112 hgsc.bcm.edu hg19 2 3392013 3392013 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_016030 exon2 c.A619G p.S207G AGCCTCAGCACGT . 87.0 5.0 102.0 0.0 . . . . Atlas-SNP CAD 790 hgsc.bcm.edu hg19 2 27454347 27454347 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CAD NM_004341 exon16 c.G2299A p.G767S GTCATGGGCATTG . 63.0 23.0 55.0 0.0 . 199 . . Atlas-SNP CEBPZ 10153 hgsc.bcm.edu hg19 2 37449694 37449694 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CEBPZ NM_005760 exon4 c.G1894A p.E632K TTTCTTCATCATC . 54.0 8.0 54.0 0.0 . 68 . . Atlas-SNP SRBD1 55133 hgsc.bcm.edu hg19 2 45829136 45829136 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SRBD1 NM_018079 exon3 c.C167A p.P56H TCCTTGGGAGGGG . 112.0 21.0 95.0 0.0 . 107 . . Atlas-SNP CNRIP1 25927 hgsc.bcm.edu hg19 2 68521038 68521038 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CNRIP1 NM_015463 exon3 c.G451A p.E151K GTGTCTCGTTGGG . 108.0 14.0 110.0 0.0 . 45 . . Atlas-SNP ASPRV1 151516 hgsc.bcm.edu hg19 2 70188363 70188363 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ASPRV1 NM_152792 exon1 c.T458C p.L153P GGACTGAGCCTAT . 69.0 11.0 67.0 0.0 . 41 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74902504 74902504 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SEMA4F NM_004263 exon10 c.G1365A p.L455L CTACCTGGGGACA . 88.0 14.0 93.0 0.0 . 89 . . Atlas-SNP ADRA2B 151 hgsc.bcm.edu hg19 2 96781723 96781723 + Missense_Mutation SNP C C T rs370956755 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ADRA2B NM_000682 exon1 c.G166A p.A56T CGGCGGCGGCCAG . 213.0 33.0 236.0 0.0 . 115 . . Atlas-SNP AFF3 3899 hgsc.bcm.edu hg19 2 100289003 100289003 + Missense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AFF3 NM_001025108 exon11 c.A1215T p.E405D TACCTGTTCATTC . 69.0 8.0 100.0 0.0 . 164 . . Atlas-SNP TGFBRAP1 9392 hgsc.bcm.edu hg19 2 105924248 105924248 + Missense_Mutation SNP G G C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TGFBRAP1 NM_004257 exon2 c.C511G p.L171V CAGCGAGGGGCTG . 89.0 24.0 85.0 0.0 . 70 . . Atlas-SNP SULT1C3 442038 hgsc.bcm.edu hg19 2 108881280 108881280 + Splice_Site SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SULT1C3 NM_001008743 exon6 c.622-1G>T . CATACAGGACCCA . 150.0 13.0 159.0 0.0 . 53 . . Atlas-SNP SH3RF3 344558 hgsc.bcm.edu hg19 2 110049067 110049067 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SH3RF3 NM_001099289 exon6 c.C1514T p.A505V AGGGGGCGTCTCT . 84.0 8.0 126.0 0.0 . 62 . . Atlas-SNP SLC20A1 6574 hgsc.bcm.edu hg19 2 113418726 113418726 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC20A1 NM_005415 exon10 c.A1801G p.S601G GGCTTCAGTATTG . 77.0 9.0 73.0 0.0 . 59 . . Atlas-SNP SCTR 6344 hgsc.bcm.edu hg19 2 120199162 120199162 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SCTR NM_002980 exon12 c.C1154T p.A385V AGGACGGCCACCA . 81.0 28.0 87.0 0.0 . 45 . . Atlas-SNP TMEM163 81615 hgsc.bcm.edu hg19 2 135470783 135470783 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TMEM163,caecum,adenoma,0,1 TMEM163 NM_030923 exon2 c.G309A p.A103A AGCCACCGCGAGG . 93.0 15.0 100.0 0.0 . 34 . . Atlas-SNP ZRANB3 84083 hgsc.bcm.edu hg19 2 135985392 135985392 + Missense_Mutation SNP C C G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZRANB3 NM_032143 exon14 c.G2148C p.Q716H ACCTGGCTGGGAT . 88.0 13.0 95.0 0.0 . 109 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141299487 141299487 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRP1B NM_018557 exon44 c.T7248A p.N2416K TATATAATTGTCA . 117.0 22.0 140.0 0.0 . 1315 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141709436 141709436 + Silent SNP G G A rs146639012 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRP1B NM_018557 exon19 c.C2961T p.C987C AGAGTCGCAGTGC . 86.0 11.0 107.0 0.0 . 1315 . G|1.000;A|0.000 Atlas-SNP SCN3A 6328 hgsc.bcm.edu hg19 2 166032889 166032889 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SCN3A NM_001081676 exon3 c.T16C p.L6L GTACCAACAGTGC . 65.0 30.0 61.0 0.0 . 544 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170033019 170033019 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da LRP2,NS,carcinoma,0,1 LRP2 NM_004525 exon54 c.C10473T p.C3491C ACACTCGCAAGTG . 107.0 5.0 97.0 0.0 . 751 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179588283 179588283 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TTN NM_001267550 exon74 c.C21544T p.R7182W TGCACCGGTCTCC . 132.0 23.0 107.0 0.0 . 18412 . . Atlas-SNP ALS2 57679 hgsc.bcm.edu hg19 2 202622187 202622187 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ALS2 NM_020919 exon5 c.T1409C p.I470T TCTCTGATATCCA . 123.0 15.0 122.0 0.0 . 172 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220313610 220313610 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPEG NM_005876 exon4 c.C1730T p.A577V GGCCGGCGGGCAG . 29.0 9.0 39.0 0.0 . 272 . . Atlas-SNP SP110 3431 hgsc.bcm.edu hg19 2 231033882 231033882 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SP110 NM_080424 exon19 c.T2100C p.G700G ATGAAAACCGAGC . 68.0 11.0 66.0 0.0 . 105 . . Atlas-SNP ESPNL 339768 hgsc.bcm.edu hg19 2 239039675 239039675 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ESPNL NM_194312 exon9 c.C2320T p.R774W GGGTTGCGGGGCC . 76.0 17.0 67.0 0.0 . 63 . . Atlas-SNP HDAC4 9759 hgsc.bcm.edu hg19 2 240056341 240056341 + Splice_Site SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HDAC4 NM_006037 exon11 c.979-2A>G . CTCGTCTGGGGAC . 79.0 11.0 73.0 0.0 . 127 . . Atlas-SNP OR6B2 389090 hgsc.bcm.edu hg19 2 240969782 240969782 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR6B2 NM_001005853 exon1 c.G65A p.G22E TGCAGCCCTGGGG . 156.0 47.0 191.0 0.0 . 30 . . Atlas-SNP TATDN2 9797 hgsc.bcm.edu hg19 3 10312434 10312434 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TATDN2 NM_014760 exon4 c.G1568A p.S523N TTTACAGCAGCTC . 122.0 30.0 100.0 0.0 . 59 . . Atlas-SNP METTL6 131965 hgsc.bcm.edu hg19 3 15455608 15455608 + Missense_Mutation SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . METTL6 NM_152396 exon5 c.T593G p.L198R AACCTAAGCATGG . 140.0 23.0 109.0 0.0 . 27 . . Atlas-SNP CDHR4 389118 hgsc.bcm.edu hg19 3 49833197 49833197 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CDHR4 NM_001007540 exon7 c.C711T p.L237L CTGCTCGCTGGAC . 113.0 56.0 114.0 0.0 . 37 . . Atlas-SNP IFRD2 7866 hgsc.bcm.edu hg19 3 50326695 50326695 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IFRD2 NM_006764 exon8 c.G1068T p.R356R AAGGTCCCGGGCA . 180.0 99.0 217.0 1.0 . 34 . . Atlas-SNP ARL6 84100 hgsc.bcm.edu hg19 3 97487017 97487017 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ARL6 NM_177976 exon3 c.C66T p.C22C TTTGTGCCTTGGG . 115.0 44.0 140.0 0.0 . 19 . . Atlas-SNP OR5H14 403273 hgsc.bcm.edu hg19 3 97869067 97869067 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR5H14 NM_001005514 exon1 c.G838T p.V280F TACACTGTCATAG . 156.0 17.0 130.0 0.0 . 56 . . Atlas-SNP ZXDC 79364 hgsc.bcm.edu hg19 3 126180881 126180881 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZXDC NM_025112 exon6 c.G1624A p.V542I AAGTGACGTCAAT . 122.0 7.0 98.0 0.0 . 87 . . Atlas-SNP CHST13 166012 hgsc.bcm.edu hg19 3 126261099 126261099 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CHST13 NM_152889 exon3 c.C704T p.P235L TGGACCCGCGCAC . 24.0 5.0 29.0 0.0 . 21 . . Atlas-SNP ABTB1 80325 hgsc.bcm.edu hg19 3 127395229 127395229 + Missense_Mutation SNP C C G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABTB1 NM_172027 exon5 c.C435G p.D145E GCTGGACACCAAA . 117.0 35.0 116.0 0.0 . 36 . . Atlas-SNP PAQR9 344838 hgsc.bcm.edu hg19 3 142681759 142681759 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PAQR9 NM_198504 exon1 c.C420T p.H140H GAACACGTGCGCC . 96.0 19.0 89.0 0.0 . 57 . . Atlas-SNP CP 1356 hgsc.bcm.edu hg19 3 148925301 148925301 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CP NM_000096 exon5 c.C885T p.H295H AGCTGCGTGCACA . 166.0 25.0 139.0 0.0 . 112 . . Atlas-SNP MBNL1 4154 hgsc.bcm.edu hg19 3 152164531 152164531 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MBNL1 NM_207293 exon5 c.G846T p.E282D CCTCGAGGCAACC . 81.0 19.0 81.0 0.0 . 100 . . Atlas-SNP PLCH1 23007 hgsc.bcm.edu hg19 3 155198960 155198960 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PLCH1 NM_001130960 exon23 c.A4879G p.N1627D GGCGATTCACTGC . 113.0 21.0 133.0 0.0 . 406 . . Atlas-SNP ZBBX 79740 hgsc.bcm.edu hg19 3 167000188 167000188 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZBBX NM_001199201 exon20 c.A2092G p.R698G CACTTCTTGATCG . 294.0 42.0 286.0 0.0 . 299 . . Atlas-SNP ACTL6A 86 hgsc.bcm.edu hg19 3 179294051 179294051 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ACTL6A NM_004301 exon6 c.A523G p.T175A GGAGCCACTCATA . 100.0 22.0 92.0 0.0 . 43 . . Atlas-SNP NDUFB5 4711 hgsc.bcm.edu hg19 3 179336273 179336273 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NDUFB5 NM_002492 exon5 c.C413T p.A138V CAATGGCCGTCCT . 130.0 20.0 117.0 0.0 . 22 . . Atlas-SNP CHRD 8646 hgsc.bcm.edu hg19 3 184105204 184105204 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da CHRD,NS,carcinoma,0,1 CHRD NM_003741 exon19 c.C2390T p.T797M CGGGTACGCGGTG . 61.0 18.0 76.0 0.0 . 149 . . Atlas-SNP ETV5 2119 hgsc.bcm.edu hg19 3 185797806 185797806 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ETV5 NM_004454 exon7 c.T450C p.F150F TGGGGGAAATAGG . 76.0 9.0 61.0 0.0 . 106 . . Atlas-SNP GMNC 647309 hgsc.bcm.edu hg19 3 190575656 190575656 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GMNC NM_001146686 exon4 c.A300G p.E100E GGCGAGTTCTTCT . 136.0 18.0 121.0 0.0 . 12 . . Atlas-SNP SLC26A1 10861 hgsc.bcm.edu hg19 4 985227 985227 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC26A1 NM_022042 exon2 c.G265A p.A89T AGTAGGCGATGGC . 203.0 21.0 164.0 0.0 . 44 . . Atlas-SNP ADD1 118 hgsc.bcm.edu hg19 4 2910332 2910332 + Splice_Site SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ADD1 NM_176801 exon12 c.1698+1G>A . GTCCAGGTGAGAG . 101.0 26.0 103.0 0.0 . 56 . . Atlas-SNP HTT 3064 hgsc.bcm.edu hg19 4 3162106 3162106 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HTT NM_002111 exon29 c.A3851G p.Q1284R CACTGCAGGACAT . 110.0 26.0 104.0 0.0 . 221 . . Atlas-SNP HGFAC 3083 hgsc.bcm.edu hg19 4 3444865 3444865 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HGFAC NM_001528 exon3 c.C387T p.H129H TGCACACAGGAAG . 110.0 27.0 80.0 0.0 . 69 . . Atlas-SNP KIAA0232 9778 hgsc.bcm.edu hg19 4 6865898 6865898 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KIAA0232 NM_014743 exon7 c.A3789G p.G1263G TTCGGGACAGCTG . 126.0 14.0 124.0 0.0 . 102 . . Atlas-SNP LCORL 254251 hgsc.bcm.edu hg19 4 17910804 17910804 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LCORL NM_001166139 exon5 c.A595G p.N199D CTTGATTCATTTG . 181.0 47.0 159.0 0.0 . 60 . . Atlas-SNP DHX15 1665 hgsc.bcm.edu hg19 4 24578249 24578249 + Nonsense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DHX15 NM_001358 exon2 c.C124T p.R42X GTTCTCGGTCTCG . 102.0 29.0 92.0 0.0 . 69 . . Atlas-SNP TLR6 10333 hgsc.bcm.edu hg19 4 38829083 38829083 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TLR6 NM_006068 exon2 c.T2012C p.I671T AGACAAATCTGTA . 116.0 16.0 107.0 0.0 . 67 . . Atlas-SNP PPAT 5471 hgsc.bcm.edu hg19 4 57269502 57269502 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPAT NM_002703 exon4 c.G468A p.A156A GGTATACGCCAGT . 59.0 11.0 80.0 0.0 . 41 . . Atlas-SNP GRSF1 2926 hgsc.bcm.edu hg19 4 71702012 71702012 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GRSF1 NM_002092 exon2 c.T377C p.L126P TCTTCCAGGTAAG . 193.0 41.0 263.0 0.0 . 35 . . Atlas-SNP SPRY1 10252 hgsc.bcm.edu hg19 4 124323492 124323492 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPRY1 NM_001258039 exon2 c.C746T p.S249L CCTGTTCACAATC . 53.0 14.0 70.0 0.0 . 28 . . Atlas-SNP ABCE1 6059 hgsc.bcm.edu hg19 4 146030397 146030397 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABCE1 NM_002940 exon5 c.A401G p.Y134C GAAAGTACGATGT . 45.0 24.0 50.0 0.0 . 47 . . Atlas-SNP NR2F1 7025 hgsc.bcm.edu hg19 5 92923806 92923806 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NR2F1 NM_005654 exon2 c.T647C p.I216T TGGGCATCGAGAA . 118.0 17.0 133.0 0.0 . 56 . . Atlas-SNP WDR36 134430 hgsc.bcm.edu hg19 5 110456746 110456746 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . WDR36 NM_139281 exon19 c.T2223C p.Y741Y AGAATATGATTCG . 207.0 47.0 206.0 0.0 . 111 . . Atlas-SNP FTMT 94033 hgsc.bcm.edu hg19 5 121187928 121187928 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da FTMT,NS,carcinoma,0,2 FTMT NM_177478 exon1 c.G270A p.A90A CTATGCGTCCTAC . 150.0 43.0 113.0 1.0 . 71 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 129039961 129039961 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ADAMTS19 NM_133638 exon21 c.T3171C p.R1057R CATACGTCATCGG . 149.0 16.0 141.0 0.0 . 216 . . Atlas-SNP VDAC1 7416 hgsc.bcm.edu hg19 5 133311575 133311575 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . VDAC1 NM_003374 exon7 c.A689G p.D230G CAGGCGTCAGGGT . 158.0 21.0 141.0 0.0 . 17 . . Atlas-SNP WDR55 54853 hgsc.bcm.edu hg19 5 140049100 140049100 + Missense_Mutation SNP G G A rs367668945 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da WDR55,NS,carcinoma,0,2 WDR55 NM_017706 exon7 c.G1013A p.R338H GTCGGCGCAAAAA . 322.0 36.0 255.0 0.0 . 27 . . Atlas-SNP PCDHB15 56121 hgsc.bcm.edu hg19 5 140625888 140625888 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PCDHB15 NM_018935 exon1 c.G742A p.E248K CTCTACGAGGTGC . 125.0 38.0 107.0 0.0 . 138 . . Atlas-SNP CSNK1A1 1452 hgsc.bcm.edu hg19 5 148929723 148929723 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CSNK1A1 NM_001025105 exon2 c.T145C p.S49P TCTGAGATTCTAG . 79.0 11.0 65.0 0.0 . 63 . . Atlas-SNP PPARGC1B 133522 hgsc.bcm.edu hg19 5 149219652 149219652 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPARGC1B NM_133263 exon9 c.C2667T p.H889H CCGGCACGCCAGG . 89.0 23.0 68.0 0.0 . 74 . . Atlas-SNP PDE6A 5145 hgsc.bcm.edu hg19 5 149262997 149262997 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PDE6A NM_000440 exon17 c.C2130T p.I710I CATAACGATTTCC . 104.0 34.0 99.0 0.0 . 98 . . Atlas-SNP CCNG1 900 hgsc.bcm.edu hg19 5 162869465 162869465 + Missense_Mutation SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CCNG1 NM_199246 exon7 c.A782C p.N261T AACCAAATGTTCA . 148.0 35.0 131.0 0.0 . 28 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167626887 167626887 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da ODZ2_ENST00000519204,NS,carcinoma,-1,3 . NM_001122679 exon17 c.G3154A p.E1052K GAAATCGAGCTCC . 82.0 11.0 57.0 0.0 . . . . Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176518089 176518089 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FGFR4 NM_022963 exon4 c.G587A p.R196H AGAACCGCATTGG . 83.0 21.0 85.0 0.0 . 174 . . Atlas-SNP PDLIM7 9260 hgsc.bcm.edu hg19 5 176916601 176916601 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da PDLIM7,NS,haematopoietic_neoplasm,0,1 PDLIM7 NM_005451 exon9 c.G662A p.R221H GGCGGGCGGCTGG . 98.0 33.0 66.0 0.0 . 32 . . Atlas-SNP N4BP3 23138 hgsc.bcm.edu hg19 5 177548875 177548875 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . N4BP3 NM_015111 exon5 c.A1508G p.Y503C TGCGCTACCAGCG . 80.0 8.0 67.0 0.0 . 25 . . Atlas-SNP COL23A1 91522 hgsc.bcm.edu hg19 5 177669109 177669109 + Silent SNP G G C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . COL23A1 NM_173465 exon27 c.C1515G p.G505G TTTCCGGCCGGGG . 97.0 32.0 97.0 0.0 . 47 . . Atlas-SNP NUP153 9972 hgsc.bcm.edu hg19 6 17629463 17629463 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NUP153 NM_005124 exon18 c.A2967G p.L989L GTTGCTTAAACCA . 196.0 63.0 175.0 0.0 . 116 . . Atlas-SNP FAM65B 9750 hgsc.bcm.edu hg19 6 24850823 24850823 + Splice_Site SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM65B NM_014722 exon11 c.798+2T>C . TACTGTACCTTGA . 66.0 8.0 59.0 0.0 . 134 . . Atlas-SNP HIST1H2BF 8343 hgsc.bcm.edu hg19 6 26199792 26199792 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HIST1H2BF NM_003522 exon1 c.T6C p.P2P CATGCCTGAACCT . 121.0 15.0 106.0 0.0 . 25 . . Atlas-SNP ZSCAN16 80345 hgsc.bcm.edu hg19 6 28097499 28097499 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZSCAN16 NM_025231 exon4 c.T818C p.F273S AAGCCTTCATTCA . 111.0 10.0 92.0 0.0 . 24 . . Atlas-SNP UBD 10537 hgsc.bcm.edu hg19 6 29523920 29523920 + Nonsense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . UBD NM_006398 exon2 c.A235T p.K79X CCACTTTCAGGGT . 218.0 52.0 193.0 0.0 . 13 . . Atlas-SNP DDR1 780 hgsc.bcm.edu hg19 6 30863232 30863232 + Missense_Mutation SNP G G A rs145280414 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da DDR1_ENST00000376575,caecum,carcinoma,0,4 DDR1 NM_013994 exon11 c.G1565A p.R522H ACGCCCGTCCCCC . 51.0 9.0 46.0 0.0 . 213 . G|1.000;A|0.000 Atlas-SNP VWA7 80737 hgsc.bcm.edu hg19 6 31741028 31741028 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_025258 exon6 c.A908G p.D303G GAGAAATCCCTGT . 57.0 10.0 48.0 0.0 . . . . Atlas-SNP VARS 7407 hgsc.bcm.edu hg19 6 31749894 31749894 + Silent SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . VARS NM_006295 exon18 c.T2211G p.T737T ACTGACAGTGACA . 138.0 14.0 127.0 0.0 . 76 . . Atlas-SNP VPS52 6293 hgsc.bcm.edu hg19 6 33239413 33239413 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . VPS52 NM_022553 exon1 c.C40T p.L14L ACACCAGTTCCCG . 149.0 17.0 139.0 0.0 . 56 . . Atlas-SNP TEAD3 7005 hgsc.bcm.edu hg19 6 35443844 35443844 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TEAD3 NM_003214 exon10 c.T752A p.I251N TGGCCGATGTGCA . 93.0 10.0 62.0 0.0 . 52 . . Atlas-SNP DAAM2 23500 hgsc.bcm.edu hg19 6 39867871 39867871 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DAAM2 NM_001201427 exon23 c.C2698T p.R900C CAGAGGCGCCAGG . 95.0 11.0 77.0 0.0 . 101 . . Atlas-SNP LRFN2 57497 hgsc.bcm.edu hg19 6 40360329 40360329 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRFN2 NM_020737 exon3 c.G1723A p.V575M AGTACACATTGCT . 57.0 19.0 71.0 0.0 . 133 . . Atlas-SNP GNMT 27232 hgsc.bcm.edu hg19 6 42930828 42930828 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GNMT NM_018960 exon4 c.G470A p.R157Q AGCACCGGCTGGC . 54.0 5.0 27.0 0.0 . 13 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43172484 43172484 + Splice_Site SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CUL9 NM_015089 exon22 c.4340-2A>C . CTCTACAGTCAGC . 100.0 28.0 85.0 0.0 . 248 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43192000 43192000 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CUL9 NM_015089 exon41 c.C7371A p.S2457S GGCCTCCTCAGGG . 123.0 14.0 105.0 0.0 . 248 . . Atlas-SNP GTPBP2 54676 hgsc.bcm.edu hg19 6 43593198 43593198 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GTPBP2 NM_019096 exon5 c.C607T p.R203W GAGCCCGGCCCCG . 147.0 25.0 104.0 0.0 . 39 . . Atlas-SNP TFAP2D 83741 hgsc.bcm.edu hg19 6 50740417 50740417 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TFAP2D,NS,carcinoma,0,2 TFAP2D NM_172238 exon8 c.C1199T p.T400I TCCAAACAGTTCT . 126.0 24.0 129.0 1.0 . 144 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65707487 65707487 + Missense_Mutation SNP T T G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . EYS NM_001142800 exon14 c.A2247C p.K749N CAGGTCTTTGCAG . 251.0 36.0 220.0 0.0 . 527 . . Atlas-SNP SMAP1 60682 hgsc.bcm.edu hg19 6 71546688 71546688 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SMAP1 NM_001044305 exon7 c.C621T p.S207S TACCAGCCCTAAA . 446.0 152.0 316.0 1.0 . 77 . . Atlas-SNP SYNCRIP 10492 hgsc.bcm.edu hg19 6 86350164 86350164 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SYNCRIP NM_006372 exon3 c.G267A p.Q89Q CATTACCTGAACA . 93.0 54.0 92.0 0.0 . 80 . . Atlas-SNP MMS22L 253714 hgsc.bcm.edu hg19 6 97681837 97681837 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MMS22L NM_198468 exon12 c.A1202G p.Q401R CGTAATTGTTCTT . 202.0 83.0 208.0 0.0 . 102 . . Atlas-SNP ASCC3 10973 hgsc.bcm.edu hg19 6 101247376 101247376 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ASCC3 NM_006828 exon7 c.A1200G p.I400M ATAATGTATTTTT . 48.0 24.0 39.0 0.0 . 205 . . Atlas-SNP FBXO5 26271 hgsc.bcm.edu hg19 6 153296638 153296638 + Silent SNP G G A rs143943044 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FBXO5 NM_012177 exon2 c.C222T p.Y74Y AGGGGTGTAGGAA . 87.0 24.0 72.0 0.0 . 40 . G|1.000;A|0.000 Atlas-SNP ZDHHC14 79683 hgsc.bcm.edu hg19 6 158014023 158014023 + Missense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZDHHC14 NM_024630 exon3 c.T410A p.I137N CAGATATCGCAAA . 167.0 21.0 170.0 0.0 . 39 . . Atlas-SNP FAM120B 84498 hgsc.bcm.edu hg19 6 170697398 170697398 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM120B NM_032448 exon7 c.C2307A p.A769A CAGAGCCGTGCAG . 84.0 13.0 88.0 0.0 . 108 . . Atlas-SNP TNRC18 84629 hgsc.bcm.edu hg19 7 5427704 5427704 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TNRC18 NM_001080495 exon5 c.C1751T p.A584V TGCATGGCCGAGG . 161.0 44.0 100.0 0.0 . 311 . . Atlas-SNP OSBPL3 26031 hgsc.bcm.edu hg19 7 24859857 24859857 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OSBPL3 NM_015550 exon17 c.G1885A p.V629I GGCTGACCTGATG . 524.0 159.0 417.0 1.0 . 100 . . Atlas-SNP ADCYAP1R1 117 hgsc.bcm.edu hg19 7 31123783 31123783 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ADCYAP1R1 NM_001118 exon7 c.C356T p.T119M ACTGCACGGAGGA . 140.0 26.0 127.0 0.0 . 78 . . Atlas-SNP GLI3 2737 hgsc.bcm.edu hg19 7 42017310 42017310 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GLI3 NM_000168 exon12 c.C1659T p.C553C CTTTGTGCAACCT . 177.0 49.0 174.0 0.0 . 312 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47925412 47925412 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PKD1L1 NM_138295 exon18 c.C3077T p.A1026V AGGACTGCAGAGT . 134.0 47.0 108.0 0.0 . 328 . . Atlas-SNP CLDN4 1364 hgsc.bcm.edu hg19 7 73245764 73245764 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CLDN4 NM_001305 exon1 c.A233G p.Q78R ACCTGCAGGCGGC . 112.0 5.0 79.0 0.0 . 10 . . Atlas-SNP TRRAP 8295 hgsc.bcm.edu hg19 7 98528292 98528292 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TRRAP NM_001244580 exon25 c.C3430T p.R1144C GTGGAGCGCCTGT . 89.0 32.0 81.0 0.0 . 863 . . Atlas-SNP ZNF394 84124 hgsc.bcm.edu hg19 7 99092121 99092121 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF394 NM_032164 exon3 c.T717C p.H239H GTCCTCATGGGTA . 64.0 17.0 45.0 0.0 . 48 . . Atlas-SNP PRKAR2B 5577 hgsc.bcm.edu hg19 7 106685627 106685627 + Missense_Mutation SNP A A C rs368313660 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PRKAR2B NM_002736 exon1 c.A275C p.E92A AGGAGGAGGCGGC . 111.0 40.0 85.0 0.0 . 34 . . Atlas-SNP HBP1 26959 hgsc.bcm.edu hg19 7 106840668 106840668 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HBP1 NM_001244262 exon10 c.C1479T p.Y493Y AATGTACACATTA . 202.0 47.0 137.0 0.0 . 31 . . Atlas-SNP HYAL4 23553 hgsc.bcm.edu hg19 7 123509038 123509038 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HYAL4 NM_012269 exon3 c.C711T p.C237C GTCATGCCCAGAA . 123.0 14.0 125.0 0.0 . 65 . . Atlas-SNP SLC35B4 84912 hgsc.bcm.edu hg19 7 133979689 133979689 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC35B4 NM_032826 exon10 c.C892T p.L298L TGCCCAGCCAGTG . 119.0 32.0 116.0 0.0 . 19 . . Atlas-SNP DOK2 9046 hgsc.bcm.edu hg19 8 21767272 21767272 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DOK2 NM_003974 exon5 c.G789A p.S263S GGGCAGCGACGCG . 30.0 10.0 55.0 0.0 . 51 . . Atlas-SNP HR 55806 hgsc.bcm.edu hg19 8 21976493 21976493 + Silent SNP G G A rs371739727 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da HR,NS,carcinoma,0,1 HR NM_018411 exon16 c.C3183T p.D1061D CTGGGCGTCCTGT . 129.0 48.0 182.0 1.0 . 71 . . Atlas-SNP PURG 29942 hgsc.bcm.edu hg19 8 30889771 30889771 + Silent SNP G G A rs11574152 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PURG NM_013357 exon1 c.C528T p.I176I CCTCTCGATATAG . 58.0 16.0 70.0 0.0 . 79 . G|0.999;T|0.001 Atlas-SNP TTI2 80185 hgsc.bcm.edu hg19 8 33357912 33357912 + Silent SNP G G A rs145192530 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001265581 exon7 c.C1356T p.S452S CAGGGCGCTCTTA . 86.0 42.0 87.0 0.0 . . . G|1.000;A|0.000 Atlas-SNP IKBKB 3551 hgsc.bcm.edu hg19 8 42178286 42178286 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IKBKB NM_001556 exon16 c.A1612G p.M538V CGGATGATGGCTC . 101.0 12.0 83.0 0.0 . 88 . . Atlas-SNP SNAI2 6591 hgsc.bcm.edu hg19 8 49832741 49832741 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SNAI2 NM_003068 exon2 c.A339G p.L113L GGACTGTAGTCTT . 190.0 43.0 160.0 0.0 . 53 . . Atlas-SNP MCMDC2 157777 hgsc.bcm.edu hg19 8 67796211 67796211 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MCMDC2 NM_173518 exon9 c.A1055T p.D352V CAAGTGATACTCT . 77.0 13.0 50.0 0.0 . 84 . . Atlas-SNP ARFGEF1 10565 hgsc.bcm.edu hg19 8 68151115 68151115 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ARFGEF1 NM_006421 exon21 c.C2993T p.A998V ACATATGCATCTC . 124.0 14.0 69.0 0.0 . 196 . . Atlas-SNP EYA1 2138 hgsc.bcm.edu hg19 8 72267025 72267025 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da EYA1,NS,carcinoma,0,1 EYA1 NM_172059 exon2 c.G116A p.G39D TCGGTGCCATTGG . 117.0 17.0 103.0 0.0 . 108 . . Atlas-SNP GDAP1 54332 hgsc.bcm.edu hg19 8 75276245 75276245 + Silent SNP C C T rs367790253 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GDAP1 NM_018972 exon6 c.C720T p.C240C GCTCTGCGGTGAA . 193.0 22.0 140.0 0.0 . 36 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77617094 77617094 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZFHX4 NM_024721 exon2 c.T771C p.P257P TGTCCCTAACAAT . 117.0 41.0 101.0 0.0 . 878 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77617133 77617133 + Silent SNP C C T rs369214100 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZFHX4 NM_024721 exon2 c.C810T p.S270S TGTTAGCGATGGG . 161.0 7.0 109.0 0.0 . 878 . . Atlas-SNP PAG1 55824 hgsc.bcm.edu hg19 8 81897456 81897456 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PAG1 NM_018440 exon7 c.C431T p.T144I AGCATGGTATCCA . 139.0 36.0 101.0 0.0 . 39 . . Atlas-SNP ZHX2 22882 hgsc.bcm.edu hg19 8 123965549 123965549 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZHX2 NM_014943 exon3 c.A1799G p.K600R GCAAAAAAGGCCA . 162.0 17.0 108.0 0.0 . 106 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143563066 143563066 + Silent SNP C C T rs376677183 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BAI1 NM_001702 exon10 c.C2124T p.D708D TGGGGACGTACAG . 76.0 5.0 48.0 0.0 . 146 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143599549 143599549 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da BAI1,caecum,carcinoma,0,1 BAI1 NM_001702 exon18 c.C2868T p.G956G CTGTGGCGTGTCC . 100.0 12.0 62.0 0.0 . 146 . . Atlas-SNP ZNF696 79943 hgsc.bcm.edu hg19 8 144378780 144378780 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF696 NM_030895 exon3 c.G935A p.R312H AGCACCGCCGCAT . 51.0 17.0 46.0 0.0 . 18 . . Atlas-SNP NAPRT1 93100 hgsc.bcm.edu hg19 8 144657636 144657636 + Silent SNP C C T rs143442304 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NAPRT1 NM_145201 exon10 c.G1248A p.T416T AGGCAACGTCTGC . 301.0 62.0 196.0 0.0 . 47 . C|1.000;T|0.000 Atlas-SNP PPP1R16A 84988 hgsc.bcm.edu hg19 8 145724317 145724317 + Nonsense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da PPP1R16A,colon,carcinoma,0,1 PPP1R16A NM_032902 exon3 c.C349T p.R117X GATTTCCGAGAGA . 82.0 6.0 55.0 0.0 . 25 . . Atlas-SNP PPP1R16A 84988 hgsc.bcm.edu hg19 8 145727136 145727136 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPP1R16A NM_032902 exon10 c.T1437C p.P479P GAGCCCTGAGACA . 171.0 16.0 134.0 0.0 . 25 . . Atlas-SNP KCNV2 169522 hgsc.bcm.edu hg19 9 2718843 2718843 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KCNV2 NM_133497 exon1 c.C1104T p.S368S GGGCAGCGTGGGT . 48.0 9.0 45.0 0.0 . 72 . . Atlas-SNP KDM4C 23081 hgsc.bcm.edu hg19 9 7174674 7174674 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KDM4C NM_015061 exon22 c.T3116C p.V1039A ACCCTGTATACCG . 141.0 9.0 162.0 0.0 . 186 . . Atlas-SNP TOPORS 10210 hgsc.bcm.edu hg19 9 32544180 32544180 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TOPORS NM_005802 exon3 c.T343C p.Y115H CTAAGTAAGACAC . 1442.0 140.0 1704.0 0.0 . 127 . . Atlas-SNP RPP25L 138716 hgsc.bcm.edu hg19 9 34611031 34611031 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_148179 exon2 c.G263A p.R88H AGGAAACGTAGCT . 84.0 15.0 87.0 0.0 . . . . Atlas-SNP SHB 6461 hgsc.bcm.edu hg19 9 37919975 37919975 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SHB NM_003028 exon6 c.A1373G p.K458R GCCAGTTTCATGT . 117.0 25.0 99.0 0.0 . 31 . . Atlas-SNP PRKACG 5568 hgsc.bcm.edu hg19 9 71628335 71628335 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da PRKACG,middle_lobe,carcinoma,0,1 PRKACG NM_002732 exon1 c.T674C p.L225P ACCCCTAGGGCCC . 89.0 12.0 82.0 0.0 . 65 . . Atlas-SNP SECISBP2 79048 hgsc.bcm.edu hg19 9 91940370 91940370 + Missense_Mutation SNP T T G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SECISBP2 NM_024077 exon3 c.T211G p.F71V ATGGCCTTTGGAG . 91.0 5.0 82.0 0.0 . 64 . . Atlas-SNP HSD17B3 3293 hgsc.bcm.edu hg19 9 99006674 99006674 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HSD17B3 NM_000197 exon9 c.G609A p.A203A CACAAACGCCTGG . 70.0 32.0 98.0 0.0 . 32 . . Atlas-SNP TEX10 54881 hgsc.bcm.edu hg19 9 103065915 103065915 + Missense_Mutation SNP G G A rs371930194 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TEX10 NM_017746 exon14 c.C2675T p.T892M CTTACCGTGATAT . 166.0 26.0 173.0 0.0 . 99 . . Atlas-SNP DEC1 50514 hgsc.bcm.edu hg19 9 118163488 118163488 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DEC1 NM_017418 exon7 c.T104C p.L35P ATGCCCTGCACAG . 61.0 11.0 34.0 0.0 . 8 . . Atlas-SNP COL5A1 1289 hgsc.bcm.edu hg19 9 137687112 137687112 + Missense_Mutation SNP C C T rs375600865 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da COL5A1,NS,carcinoma,0,2 COL5A1 NM_000093 exon34 c.C2750T p.P917L AGGGTCCGAGGGG . 97.0 12.0 69.0 0.0 . 323 . . Atlas-SNP PPP1R26 9858 hgsc.bcm.edu hg19 9 138376419 138376419 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_014811 exon4 c.G63A p.P21P TGGCCCGCCAGGG . 77.0 13.0 62.0 0.0 . . . . Atlas-SNP PPP1R26 9858 hgsc.bcm.edu hg19 9 138376561 138376561 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_014811 exon4 c.G205A p.A69T CGCGCCGCACAGA . 54.0 10.0 25.0 0.0 . . . . Atlas-SNP NOTCH1 4851 hgsc.bcm.edu hg19 9 139405699 139405699 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NOTCH1 NM_017617 exon16 c.C2492T p.A831V CACGGGGCCAGCA . 63.0 20.0 57.0 0.0 . 1980 . . Atlas-SNP FBXW5 54461 hgsc.bcm.edu hg19 9 139835867 139835867 + Silent SNP G G A rs372957829 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FBXW5 NM_018998 exon8 c.C1293T p.A431A GGGGTCGGCCACC . 56.0 10.0 42.0 0.0 . 36 . . Atlas-SNP FUT7 2529 hgsc.bcm.edu hg19 9 139925470 139925470 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FUT7 NM_004479 exon2 c.T721A p.F241I GCCAGAATTTCTC . 152.0 13.0 138.0 0.0 . 24 . . Atlas-SNP ITIH5 80760 hgsc.bcm.edu hg19 10 7697622 7697622 + Missense_Mutation SNP G G T rs139355305 bycluster;byfrequency;alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da ITIH5_ENST00000397145,right_lower_lobe,carcinoma,0,2 ITIH5 NM_001001851 exon2 c.C107A p.P36Q TGCCTCGGGACCC . 53.0 9.0 67.0 0.0 . 343 . G|1.000;A|0.000 Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17126368 17126368 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CUBN NM_001081 exon17 c.G2203A p.V735I TATAGACGCATTG . 128.0 18.0 134.0 0.0 . 515 . . Atlas-SNP HNRNPF 3185 hgsc.bcm.edu hg19 10 43883054 43883054 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HNRNPF NM_001098204 exon4 c.G279A p.M93I CCAATCCATCTCG . 72.0 29.0 72.0 0.0 . 57 . . Atlas-SNP ARHGAP22 58504 hgsc.bcm.edu hg19 10 49659075 49659075 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ARHGAP22 NM_001256024 exon9 c.G1145T p.C382F ACTGCGCATTGCA . 108.0 17.0 117.0 0.0 . 94 . . Atlas-SNP OGDHL 55753 hgsc.bcm.edu hg19 10 50947771 50947771 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OGDHL NM_018245 exon17 c.G2255A p.G752D GCCTGGCCGGTGC . 65.0 13.0 69.0 0.0 . 149 . . Atlas-SNP SIRT1 23411 hgsc.bcm.edu hg19 10 69648662 69648662 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SIRT1 NM_012238 exon3 c.A570G p.Q190Q TCAGCAACATCTT . 44.0 12.0 59.0 0.0 . 38 . . Atlas-SNP LIPK 643414 hgsc.bcm.edu hg19 10 90512278 90512278 + Missense_Mutation SNP C C T rs200951684 alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LIPK NM_001080518 exon9 c.C965T p.T322I AGCTTACACCTCC . 86.0 17.0 82.0 0.0 . 50 . . Atlas-SNP TCTN3 26123 hgsc.bcm.edu hg19 10 97453178 97453178 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TCTN3 NM_015631 exon2 c.C312T p.C104C GTCGCAGCAGCAA . 168.0 21.0 176.0 0.0 . 66 . . Atlas-SNP CNNM1 26507 hgsc.bcm.edu hg19 10 101089165 101089165 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CNNM1 NM_020348 exon1 c.G21A p.A7A GGCGGCGGCAGCA . 43.0 16.0 38.0 0.0 . 101 . . Atlas-SNP FAM178A 55719 hgsc.bcm.edu hg19 10 102684351 102684351 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM178A NM_001136123 exon5 c.C1593T p.A531A TAAGGCCGATTCT . 135.0 18.0 182.0 0.0 . 9 . . Atlas-SNP PSD 5662 hgsc.bcm.edu hg19 10 104171962 104171962 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PSD NM_001270965 exon8 c.G1771A p.A591T CCCCAGCCACCAG . 99.0 35.0 94.0 0.0 . 164 . . Atlas-SNP CYP17A1 1586 hgsc.bcm.edu hg19 10 104595102 104595102 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CYP17A1 NM_000102 exon2 c.T345C p.A115A AGAGTCAGCGAAG . 72.0 10.0 115.0 0.0 . 48 . . Atlas-SNP NEURL 9148 hgsc.bcm.edu hg19 10 105344832 105344832 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NEURL NM_004210 exon4 c.G1189A p.D397N AGCGGCGACATCC . 17.0 6.0 18.0 0.0 . 38 . . Atlas-SNP ACADSB 36 hgsc.bcm.edu hg19 10 124812642 124812642 + Silent SNP C C T rs142095937 bycluster;byfrequency;alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ACADSB NM_001609 exon10 c.C1194T p.Y398Y AGATTACCCTGTG . 113.0 22.0 107.0 0.0 . 45 . C|0.999;G|0.001 Atlas-SNP DHX32 55760 hgsc.bcm.edu hg19 10 127526922 127526922 + Nonsense_Mutation SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DHX32 NM_018180 exon10 c.T1916G p.L639X AGCATTAAGTAGT . 47.0 21.0 65.0 0.0 . 67 . . Atlas-SNP DPYSL4 10570 hgsc.bcm.edu hg19 10 134012411 134012411 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DPYSL4 NM_006426 exon8 c.G747A p.P249P CTGCCCGCTGTAC . 134.0 28.0 158.0 0.0 . 91 . . Atlas-SNP FUOM 282969 hgsc.bcm.edu hg19 10 135168879 135168879 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da C10orf125_ENST00000368552,NS,carcinoma,0,1 . NM_001098483 exon6 c.C460A p.L154M CCTACAGCAGGGG . 44.0 17.0 66.0 0.0 . . . . Atlas-SNP LRRC56 115399 hgsc.bcm.edu hg19 11 551775 551775 + Silent SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRRC56 NM_198075 exon10 c.C921A p.G307G TGAAGGCCTGCTT . 97.0 37.0 76.0 0.0 . 23 . . Atlas-SNP SCT 6343 hgsc.bcm.edu hg19 11 626447 626447 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SCT NM_021920 exon4 c.C350T p.T117I CGCAAGGTTCCTT . 385.0 45.0 315.0 0.0 . 4 . . Atlas-SNP OR51I2 390064 hgsc.bcm.edu hg19 11 5475291 5475291 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR51I2 NM_001004754 exon1 c.T573C p.D191D TGCTGATATCAGT . 71.0 10.0 64.0 0.0 . 76 . . Atlas-SNP OR52E8 390079 hgsc.bcm.edu hg19 11 5878052 5878052 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR52E8 NM_001005168 exon1 c.C881A p.P294H ATTACAGGATTGA . 179.0 23.0 134.0 0.0 . 54 . . Atlas-SNP OR52L1 338751 hgsc.bcm.edu hg19 11 6007754 6007754 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR52L1 NM_001005173 exon1 c.T407C p.M136T AGAGCCATGGCCA . 132.0 13.0 93.0 0.0 . 100 . . Atlas-SNP TEAD1 7003 hgsc.bcm.edu hg19 11 12883850 12883850 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TEAD1 NM_021961 exon4 c.A256G p.T86A ACGAGGACCAGAA . 139.0 35.0 119.0 0.0 . 40 . . Atlas-SNP MRGPRX4 117196 hgsc.bcm.edu hg19 11 18195145 18195145 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da MRGPRX4,NS,carcinoma,0,1 MRGPRX4 NM_054032 exon1 c.C342T p.S114S GCTGAGCGCCATC . 96.0 12.0 69.0 0.0 . 68 . . Atlas-SNP KCNA4 3739 hgsc.bcm.edu hg19 11 30034166 30034166 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KCNA4 NM_002233 exon2 c.T60C p.G20G AGCATAACCATAA . 41.0 6.0 39.0 0.0 . 158 . . Atlas-SNP HIPK3 10114 hgsc.bcm.edu hg19 11 33309022 33309022 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 HIPK3 NM_001048200 exon2 c.T1062C p.T354T AAAGACTGTTTGT . 162.0 20.0 149.0 0.0 . 92 . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33566862 33566862 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_012194 exon2 c.C2432T p.T811M TGGTCACGACTGG . 73.0 18.0 63.0 0.0 . . . . Atlas-SNP AMBRA1 55626 hgsc.bcm.edu hg19 11 46456582 46456582 + Missense_Mutation SNP C C T rs377069728 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AMBRA1 NM_001267782 exon15 c.G2647A p.V883M CATTCACGGAAGC . 86.0 10.0 79.0 0.0 . 201 . . Atlas-SNP OR4C13 283092 hgsc.bcm.edu hg19 11 49974682 49974682 + Silent SNP T T C rs145221317 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR4C13 NM_001001955 exon1 c.T708C p.S236S CCTCTCTACCTGT . 94.0 11.0 84.0 0.0 . 96 . T|1.000;C|0.000 Atlas-SNP OR8J3 81168 hgsc.bcm.edu hg19 11 55905120 55905120 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR8J3 NM_001004064 exon1 c.T75C p.I25I GAGGGGAATCTGG . 133.0 22.0 127.0 0.0 . 112 . . Atlas-SNP OR5AR1 219493 hgsc.bcm.edu hg19 11 56431409 56431409 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR5AR1 NM_001004730 exon1 c.C248T p.A83V TGCTGGCTGACTT . 115.0 30.0 109.0 0.0 . 68 . . Atlas-SNP CTNND1 1500 hgsc.bcm.edu hg19 11 57583392 57583392 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CTNND1 NM_001085458 exon20 c.C2814T p.D938D GCAGGACGAGGGG . 134.0 26.0 108.0 0.0 . 203 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62289805 62289805 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AHNAK NM_001620 exon5 c.T12084C p.G4028G TAGATCACCTTCC . 113.0 12.0 118.0 0.0 . 532 . . Atlas-SNP MEN1 4221 hgsc.bcm.edu hg19 11 64577275 64577275 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MEN1 NM_130800 exon2 c.C307A p.L103M GGGACAGGTCGAC . 134.0 24.0 119.0 0.0 . 442 . . Atlas-SNP TIGD3 220359 hgsc.bcm.edu hg19 11 65123857 65123857 + Missense_Mutation SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TIGD3 NM_145719 exon2 c.A578C p.D193A CATGTGATCAAGT . 75.0 22.0 36.0 0.0 . 32 . . Atlas-SNP FRMD8 83786 hgsc.bcm.edu hg19 11 65156924 65156924 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FRMD8 NM_031904 exon3 c.G178A p.A60T CACCGCGCTGTCC . 43.0 10.0 38.0 0.0 . 28 . . Atlas-SNP PCNXL3 399909 hgsc.bcm.edu hg19 11 65396885 65396885 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PCNXL3 NM_032223 exon25 c.T3999C p.P1333P GAACCCTGGTGTG . 121.0 14.0 122.0 0.0 . 140 . . Atlas-SNP CCDC87 55231 hgsc.bcm.edu hg19 11 66359567 66359567 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CCDC87 NM_018219 exon1 c.G920A p.R307Q CCTCTCCGGAGCT . 82.0 23.0 95.0 0.0 . 83 . . Atlas-SNP LRP5 4041 hgsc.bcm.edu hg19 11 68192642 68192642 + Silent SNP C C T rs141446007 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRP5 NM_002335 exon15 c.C3309T p.R1103R CGAGCGCGAGGTC . 79.0 12.0 73.0 0.0 . 136 . C|1.000;T|0.000 Atlas-SNP LRP5 4041 hgsc.bcm.edu hg19 11 68201261 68201261 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRP5 NM_002335 exon18 c.G3955A p.G1319S TGCGACGGCGAGG . 194.0 59.0 210.0 0.0 . 136 . . Atlas-SNP KRTAP5-11 440051 hgsc.bcm.edu hg19 11 71293746 71293746 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KRTAP5-11 NM_001005405 exon1 c.C138T p.C46C ACAGCAGCACACA . 153.0 33.0 145.0 0.0 . 36 . . Atlas-SNP CHRDL2 25884 hgsc.bcm.edu hg19 11 74414512 74414512 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da CHRDL2,NS,malignant_melanoma,0,1 CHRDL2 NM_015424 exon8 c.G784A p.G262R CCTCCCCGTGGGA . 110.0 23.0 122.0 0.0 . 47 . . Atlas-SNP KLHL35 283212 hgsc.bcm.edu hg19 11 75140869 75140869 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KLHL35 NM_001039548 exon1 c.G806A p.R269H AGCGGGCGGCACT . 41.0 8.0 28.0 0.0 . 15 . . Atlas-SNP MTNR1B 4544 hgsc.bcm.edu hg19 11 92714946 92714946 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da MTNR1B,colon,carcinoma,+1,2 MTNR1B NM_005959 exon2 c.G557A p.R186H ACCCACGCATCTA . 109.0 14.0 88.0 0.0 . 75 . . Atlas-SNP KIAA1731 85459 hgsc.bcm.edu hg19 11 93429506 93429506 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KIAA1731 NM_033395 exon14 c.A1692G p.S564S AGCATCATGCCCT . 50.0 13.0 63.0 0.0 . 173 . . Atlas-SNP TAF1D 79101 hgsc.bcm.edu hg19 11 93471438 93471438 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TAF1D NM_024116 exon3 c.A296G p.Y99C GGCTGGTACCTCC . 75.0 11.0 83.0 0.0 . 18 . . Atlas-SNP CNTN5 53942 hgsc.bcm.edu hg19 11 100221535 100221535 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CNTN5 NM_001243270 exon23 c.G3133A p.V1045I ATTGAAGTTCGAG . 178.0 35.0 127.0 0.0 . 324 . . Atlas-SNP CARD18 59082 hgsc.bcm.edu hg19 11 105009586 105009586 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CARD18 NM_021571 exon2 c.T227A p.L76H TCACAGAGATGCT . 181.0 11.0 173.0 0.0 . 18 . . Atlas-SNP MSANTD4 84437 hgsc.bcm.edu hg19 11 105880665 105880665 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_032424 exon3 c.T635C p.L212P AACTCTAGTTTCT . 60.0 19.0 56.0 0.0 . . . . Atlas-SNP CWF19L2 143884 hgsc.bcm.edu hg19 11 107299544 107299544 + Missense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CWF19L2 NM_152434 exon8 c.A1414T p.T472S ACTTTGTATCCCG . 99.0 31.0 104.0 0.0 . 135 . . Atlas-SNP PPP2R1B 5519 hgsc.bcm.edu hg19 11 111613287 111613287 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPP2R1B NM_002716 exon13 c.G1657A p.A553T ATTTGGCCACATT . 61.0 7.0 46.0 0.0 . 44 . . Atlas-SNP HYOU1 10525 hgsc.bcm.edu hg19 11 118923017 118923017 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HYOU1 NM_006389 exon10 c.A1112G p.E371G CTCATTTCGGCAC . 70.0 23.0 52.0 0.0 . 88 . . Atlas-SNP THY1 7070 hgsc.bcm.edu hg19 11 119291593 119291593 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . THY1 NM_006288 exon2 c.C23T p.A8V AGGAGAGCGATGC . 102.0 27.0 88.0 0.0 . 21 . . Atlas-SNP CLMP 79827 hgsc.bcm.edu hg19 11 122968527 122968527 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CLMP NM_024769 exon2 c.C162T p.T54T ATTATCGGTGAGC . 96.0 13.0 90.0 0.0 . 39 . . Atlas-SNP CDON 50937 hgsc.bcm.edu hg19 11 125893349 125893349 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CDON NM_016952 exon2 c.T23C p.L8S GTACATAAGGGTC . 88.0 20.0 72.0 0.0 . 137 . . Atlas-SNP GLB1L2 89944 hgsc.bcm.edu hg19 11 134217281 134217281 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GLB1L2 NM_138342 exon5 c.T512C p.V171A AAGCAGTGGACCT . 106.0 19.0 102.0 0.0 . 79 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 668587 668587 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . B4GALNT3 NM_173593 exon19 c.G2888A p.R963K TGGACAGGTGACT . 148.0 17.0 122.0 0.0 . 64 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2719737 2719737 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CACNA1C NM_199460 exon29 c.C3649T p.R1217W AAGGCCCGGCCCC . 151.0 61.0 106.0 0.0 . 1023 . . Atlas-SNP PHC1 1911 hgsc.bcm.edu hg19 12 9087824 9087824 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PHC1 NM_004426 exon11 c.C2358T p.S786S GGACAGCCCATCT . 46.0 8.0 53.0 0.0 . 67 . . Atlas-SNP GYS2 2998 hgsc.bcm.edu hg19 12 21693401 21693401 + Silent SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GYS2 NM_021957 exon14 c.C1752A p.I584I CCTCTGGATAATC . 119.0 22.0 128.0 0.0 . 110 . . Atlas-SNP ABCC9 10060 hgsc.bcm.edu hg19 12 21960410 21960410 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da ABCC9_ENST00000261201,NS,carcinoma,0,4 ABCC9 NM_005691 exon36 c.C4319T p.A1440V ACAACCGCATCTA . 101.0 47.0 77.0 0.0 . 411 . . Atlas-SNP KLHL42 57542 hgsc.bcm.edu hg19 12 27933999 27933999 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_020782 exon1 c.T736C p.Y246H AGGGGCTATGGGT . 93.0 17.0 90.0 0.0 . . . . Atlas-SNP FMNL3 91010 hgsc.bcm.edu hg19 12 50042064 50042064 + Missense_Mutation SNP C C G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FMNL3 NM_175736 exon22 c.G2588C p.S863T TGGATGCTGCACT . 87.0 12.0 70.0 0.0 . 137 . . Atlas-SNP KRT79 338785 hgsc.bcm.edu hg19 12 53227586 53227586 + Silent SNP G G A rs376301539 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da KRT79,bladder,carcinoma,0,1 KRT79 NM_175834 exon1 c.C459T p.F153F GGAGGCGAACTTG . 91.0 22.0 95.0 0.0 . 78 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70983909 70983909 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PTPRB NM_001109754 exon8 c.C1885T p.L629L AGAGTAGGATCCG . 146.0 14.0 141.0 0.0 . 676 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70983921 70983921 + Nonsense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PTPRB NM_001109754 exon8 c.C1873T p.Q625X GATACTGCTCCCA . 148.0 13.0 146.0 0.0 . 676 . . Atlas-SNP CAPS2 84698 hgsc.bcm.edu hg19 12 75678791 75678791 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da CAPS2_ENST00000409445,colon,carcinoma,0,2 CAPS2 NM_032606 exon16 c.C1522T p.R508C TACCACGTTTGAA . 79.0 16.0 53.0 0.0 . 96 . . Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94543433 94543433 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PLXNC1 NM_005761 exon1 c.C686T p.A229V AGGGCGCGGGCAG . 109.0 16.0 86.0 0.0 . 135 . . Atlas-SNP MAPKAPK5 8550 hgsc.bcm.edu hg19 12 112327908 112327908 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MAPKAPK5 NM_139078 exon13 c.C1287T p.C429C GGAATGCAAACTC . 102.0 22.0 105.0 0.0 . 56 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112613605 112613605 + Silent SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001109662 exon66 c.C11127A p.A3709A TTGCCTGGCTCGG . 115.0 5.0 135.0 0.0 . . . . Atlas-SNP DTX1 1840 hgsc.bcm.edu hg19 12 113534661 113534661 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DTX1 NM_004416 exon9 c.G1780A p.G594S GGCCACGGCTACC . 48.0 10.0 66.0 0.0 . 83 . . Atlas-SNP RBM19 9904 hgsc.bcm.edu hg19 12 114392958 114392958 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RBM19 NM_001146699 exon7 c.G899T p.G300V GGGGCTCCCCGCA . 72.0 9.0 93.0 0.0 . 117 . . Atlas-SNP MLXIP 22877 hgsc.bcm.edu hg19 12 122625584 122625584 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MLXIP NM_014938 exon16 c.G2592A p.A864A GACGGCGCTCTCC . 41.0 20.0 47.0 0.0 . 46 . . Atlas-SNP PITPNM2 57605 hgsc.bcm.edu hg19 12 123481370 123481370 + Silent SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PITPNM2 NM_020845 exon11 c.C1560A p.S520S GGGGGAGGAGGTG . 102.0 56.0 119.0 0.0 . 105 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 130015679 130015679 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMEM132D NM_133448 exon3 c.A1040G p.E347G GTGCGCTCCTTGA . 103.0 5.0 84.0 0.0 . 299 . . Atlas-SNP STX2 2054 hgsc.bcm.edu hg19 12 131283121 131283121 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . STX2 NM_194356 exon9 c.C735T p.H245H TTTAGCGTGTTCT . 75.0 7.0 67.0 0.0 . 66 . . Atlas-SNP TPTE2 93492 hgsc.bcm.edu hg19 13 20004677 20004677 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TPTE2 NM_199254 exon18 c.T1233C p.C411C TAGATCACATACA . 238.0 73.0 267.0 0.0 . 225 . . Atlas-SNP CENPJ 55835 hgsc.bcm.edu hg19 13 25480425 25480425 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CENPJ NM_018451 exon7 c.C1751T p.A584V TCAGCAGCTTGTT . 86.0 28.0 95.0 0.0 . 116 . . Atlas-SNP DCLK1 9201 hgsc.bcm.edu hg19 13 36700191 36700191 + Silent SNP G G A rs373323934 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da DCLK1_ENST00000255448,colon,carcinoma,0,6 DCLK1 NM_004734 exon2 c.C84T p.N28N CAGGCCGTTCACC . 63.0 18.0 48.0 0.0 . 350 . . Atlas-SNP CCDC169-SOHLH2 100526761 hgsc.bcm.edu hg19 13 36765969 36765969 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001198910 exon10 c.G724A p.E242K GGTGTTCGCTGTA . 179.0 29.0 208.0 0.0 . . . . Atlas-SNP TRIM13 10206 hgsc.bcm.edu hg19 13 50586446 50586446 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TRIM13 NM_001007278 exon4 c.A379G p.T127A GAGCACACCAAAC . 112.0 23.0 144.0 0.0 . 30 . . Atlas-SNP THSD1 55901 hgsc.bcm.edu hg19 13 52952234 52952234 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . THSD1 NM_018676 exon5 c.T1871C p.L624P CGGATCAGAGTCT . 43.0 18.0 68.0 0.0 . 89 . . Atlas-SNP KLF12 11278 hgsc.bcm.edu hg19 13 74289619 74289619 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KLF12 NM_007249 exon7 c.C913T p.R305W CAGACCGTCTCTG . 137.0 15.0 138.0 0.0 . 42 . . Atlas-SNP TUBGCP3 10426 hgsc.bcm.edu hg19 13 113212590 113212590 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TUBGCP3 NM_006322 exon5 c.C468T p.S156S GCCCACGCTGCCG . 103.0 16.0 108.0 0.0 . 74 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24877347 24877347 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NYNRIN NM_025081 exon3 c.T471C p.A157A GGAGGCTGAGGTG . 21.0 6.0 38.0 0.0 . 120 . . Atlas-SNP SIX4 51804 hgsc.bcm.edu hg19 14 61190367 61190367 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SIX4 NM_017420 exon1 c.A426G p.L142L GCCACGTAGCAGG . 86.0 19.0 113.0 0.0 . 69 . . Atlas-SNP HEATR4 399671 hgsc.bcm.edu hg19 14 73945440 73945440 + Silent SNP G G A rs78875724 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HEATR4 NM_203309 exon17 c.C2952T p.P984P TTTCTCGGGGGAG . 170.0 12.0 173.0 0.0 . 126 . G|0.962;T|0.038 Atlas-SNP SAMD15 161394 hgsc.bcm.edu hg19 14 77845085 77845085 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SAMD15 NM_001010860 exon1 c.C1324T p.R442C GAGCACCGTGAGC . 143.0 41.0 178.0 0.0 . 60 . . Atlas-SNP PTPN21 11099 hgsc.bcm.edu hg19 14 88970793 88970793 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PTPN21 NM_007039 exon6 c.T563C p.V188A AAGGCCACTTTTT . 77.0 12.0 96.0 0.0 . 113 . . Atlas-SNP DLK1 8788 hgsc.bcm.edu hg19 14 101200731 101200731 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DLK1 NM_003836 exon5 c.G650A p.C217Y GCCCGTGCCAGAA . 95.0 33.0 111.0 0.0 . 57 . . Atlas-SNP TRAF3 7187 hgsc.bcm.edu hg19 14 103371803 103371803 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TRAF3,NS,carcinoma,+2,1 TRAF3 NM_145725 exon12 c.C1389T p.D463D CGGGGACGGGATG . 89.0 13.0 149.0 0.0 . 60 . . Atlas-SNP OR4M2 390538 hgsc.bcm.edu hg19 15 22369119 22369119 + Missense_Mutation SNP A A T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OR4M2 NM_001004719 exon1 c.A544T p.T182S GACATCACACAGG . 245.0 23.0 312.0 0.0 . 140 . . Atlas-SNP GPR176 11245 hgsc.bcm.edu hg19 15 40093624 40093624 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GPR176 NM_007223 exon3 c.G1257A p.A419A AGAGGGCGCAAAC . 36.0 10.0 69.0 0.0 . 41 . . Atlas-SNP RPAP1 26015 hgsc.bcm.edu hg19 15 41810241 41810241 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RPAP1 NM_015540 exon23 c.T3935C p.V1312A CTATTGACATGAG . 79.0 5.0 86.0 0.0 . 111 . . Atlas-SNP ZSCAN29 146050 hgsc.bcm.edu hg19 15 43656143 43656143 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZSCAN29 NM_152455 exon4 c.C1660T p.R554C GAGCACGGGTTAT . 109.0 11.0 104.0 0.0 . 57 . . Atlas-SNP TRPM7 54822 hgsc.bcm.edu hg19 15 50884267 50884267 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TRPM7 NM_017672 exon26 c.A4165G p.T1389A TGCTAGTAGATGA . 66.0 8.0 71.0 0.0 . 145 . . Atlas-SNP SPG21 51324 hgsc.bcm.edu hg19 15 65268816 65268816 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPG21 NM_001127889 exon4 c.T303C p.D101D CACTTTATCCAAT . 218.0 45.0 252.0 0.0 . 29 . . Atlas-SNP ZWILCH 55055 hgsc.bcm.edu hg19 15 66821892 66821892 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZWILCH NM_017975 exon12 c.G1136A p.R379H TACAACGTGGTGA . 45.0 9.0 71.0 0.0 . 46 . . Atlas-SNP C15orf60 283677 hgsc.bcm.edu hg19 15 73832844 73832844 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C15orf60 NM_001042367 exon3 c.G268T p.G90C CTCATTGGTAGCA . 95.0 4.0 113.0 0.0 . 26 . . Atlas-SNP C15orf59 388135 hgsc.bcm.edu hg19 15 74043430 74043430 + Silent SNP G G A rs146110202 alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C15orf59 NM_001039614 exon1 c.C42T p.D14D GGGGTCGTCACTG . 41.0 6.0 46.0 0.0 . 38 . G|1.000;C|0.000 Atlas-SNP AP3B2 8120 hgsc.bcm.edu hg19 15 83357549 83357549 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AP3B2 NM_004644 exon4 c.A299G p.Y100C TCAGCGTAGCGTA . 81.0 11.0 102.0 0.0 . 103 . . Atlas-SNP KIF7 374654 hgsc.bcm.edu hg19 15 90192526 90192526 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KIF7 NM_198525 exon4 c.C602T p.A201V CGCGCCGCGTTGC . 64.0 8.0 81.0 0.0 . 130 . . Atlas-SNP GDPGP1 390637 hgsc.bcm.edu hg19 15 90784264 90784264 + Nonsense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001013657 exon4 c.C124T p.Q42X GGGATTCAGTGGC . 56.0 12.0 81.0 0.0 . . . . Atlas-SNP FURIN 5045 hgsc.bcm.edu hg19 15 91424700 91424700 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FURIN NM_002569 exon16 c.C1977T p.C659C AGACTGCCTCAGC . 75.0 11.0 81.0 0.0 . 85 . . Atlas-SNP MCTP2 55784 hgsc.bcm.edu hg19 15 94943190 94943190 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MCTP2 NM_001159643 exon15 c.G1931A p.R644H AAAAGCGCTTTGT . 108.0 20.0 129.0 0.0 . 122 . . Atlas-SNP FBXL16 146330 hgsc.bcm.edu hg19 16 744677 744677 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FBXL16 NM_153350 exon5 c.G1248A p.K416K GAGGTGCTTCAGC . 107.0 39.0 119.0 0.0 . 25 . . Atlas-SNP CHTF18 63922 hgsc.bcm.edu hg19 16 844174 844174 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CHTF18 NM_022092 exon15 c.T1923C p.S641S TGCCTCTGCGGGC . 105.0 54.0 132.0 0.0 . 52 . . Atlas-SNP RPS2 6187 hgsc.bcm.edu hg19 16 2012581 2012581 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RPS2 NM_002952 exon6 c.T626C p.V209A TTAGGCACAGGTG . 68.0 9.0 106.0 0.0 . 18 . . Atlas-SNP CREBBP 1387 hgsc.bcm.edu hg19 16 3778436 3778436 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CREBBP NM_004380 exon31 c.G6612A p.Q2204Q CTGCTGCTGTTGC . 46.0 18.0 68.0 0.0 . 546 . . Atlas-SNP VASN 114990 hgsc.bcm.edu hg19 16 4432614 4432614 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . VASN NM_138440 exon2 c.C1736T p.A579V TCATTGCGCCCGC . 111.0 24.0 135.0 0.0 . 21 . . Atlas-SNP ROGDI 79641 hgsc.bcm.edu hg19 16 4851539 4851539 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ROGDI NM_024589 exon3 c.C165T p.P55P CTTGGCGGGCCCC . 61.0 22.0 81.0 0.0 . 11 . . Atlas-SNP GRIN2A 2903 hgsc.bcm.edu hg19 16 9858337 9858337 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da GRIN2A,NS,carcinoma,0,1 GRIN2A NM_000833 exon14 c.C3064T p.R1022C CCTGGCGTATGGA . 54.0 17.0 78.0 0.0 . 366 . . Atlas-SNP TMC5 79838 hgsc.bcm.edu hg19 16 19471655 19471655 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMC5 NM_001105249 exon6 c.A1147G p.R383G AACCTTAGGTATG . 325.0 125.0 444.0 0.0 . 169 . . Atlas-SNP GSG1L 146395 hgsc.bcm.edu hg19 16 27895830 27895830 + Missense_Mutation SNP G G A rs141366433 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da GSG1L_ENST00000447459,NS,carcinoma,0,2 GSG1L NM_001109763 exon3 c.C527T p.A176V ACAGCCGCGAAGG . 78.0 19.0 102.0 0.0 . 82 . G|1.000;A|0.000 Atlas-SNP CORO1A 11151 hgsc.bcm.edu hg19 16 30198463 30198463 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CORO1A NM_001193333 exon6 c.C555T p.S185S CTGGAGCCGAGAT . 39.0 13.0 59.0 0.0 . 36 . . Atlas-SNP C16orf70 80262 hgsc.bcm.edu hg19 16 67181027 67181027 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C16orf70 NM_025187 exon16 c.T1262C p.L421P CGGAACTCCCCTA . 67.0 23.0 84.0 0.0 . 38 . . Atlas-SNP KIAA0895L 653319 hgsc.bcm.edu hg19 16 67214463 67214463 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da KIAA0895L,NS,carcinoma,0,1 KIAA0895L NM_001040715 exon2 c.G51A p.P17P GGTAGGCGGGCTG . 62.0 11.0 102.0 1.0 . 32 . . Atlas-SNP RLTPR 146206 hgsc.bcm.edu hg19 16 67683458 67683458 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RLTPR NM_001013838 exon20 c.A1855G p.N619D AGCGGCAACGCCA . 35.0 11.0 36.0 0.0 . 124 . . Atlas-SNP SF3B3 23450 hgsc.bcm.edu hg19 16 70605061 70605061 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da SF3B3,NS,adenocarcinoma,0,1 SF3B3 NM_012426 exon25 c.C3472T p.R1158W TGTGGGCGGGACC . 87.0 36.0 90.0 0.0 . 99 . . Atlas-SNP PIEZO1 9780 hgsc.bcm.edu hg19 16 88786942 88786942 + Splice_Site SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PIEZO1 NM_001142864 exon42 c.5802-2A>G . GGGCCCTGCGGAA . 41.0 11.0 40.0 0.0 . 79 . . Atlas-SNP ABR 29 hgsc.bcm.edu hg19 17 909329 909329 + Silent SNP G G A rs375629677 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABR NM_021962 exon23 c.C2571T p.T857T CACGTCGGTGGAG . 57.0 7.0 68.0 0.0 . 119 . . Atlas-SNP ATP2A3 489 hgsc.bcm.edu hg19 17 3844585 3844585 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ATP2A3 NM_174956 exon14 c.G1780A p.V594M AGCCCACGAAGGT . 99.0 43.0 99.0 0.0 . 148 . . Atlas-SNP CHD3 1107 hgsc.bcm.edu hg19 17 7798461 7798461 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CHD3 NM_001005271 exon9 c.G1673A p.R558Q GTCCCCGATGCAC . 78.0 14.0 104.0 0.0 . 169 . . Atlas-SNP KCNAB3 9196 hgsc.bcm.edu hg19 17 7832645 7832645 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KCNAB3 NM_004732 exon1 c.G109A p.G37S CCCCGCCGGCCGG . 117.0 9.0 123.0 0.0 . 30 . . Atlas-SNP ELAC2 60528 hgsc.bcm.edu hg19 17 12897811 12897811 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ELAC2 NM_018127 exon22 c.C2039T p.A680V AGGGTGGCATCTT . 98.0 12.0 142.0 0.0 . 48 . . Atlas-SNP CDRT1 374286 hgsc.bcm.edu hg19 17 15492292 15492292 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CDRT1 NM_006382 exon12 c.G2256A p.V752V CTGCTACACACCA . 94.0 41.0 80.0 0.0 . 83 . . Atlas-SNP TP53I13 90313 hgsc.bcm.edu hg19 17 27899414 27899414 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TP53I13 NM_138349 exon6 c.G768A p.P256P GCTGCCGGGGGCG . 82.0 9.0 64.0 0.0 . 17 . . Atlas-SNP RHOT1 55288 hgsc.bcm.edu hg19 17 30530945 30530945 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RHOT1 NM_001033568 exon16 c.T1369C p.Y457H TCCTACTATGCGA . 106.0 23.0 94.0 0.0 . 69 . . Atlas-SNP MLLT6 4302 hgsc.bcm.edu hg19 17 36876002 36876002 + Splice_Site SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MLLT6 NM_005937 exon14 c.2010-1G>T . GCCGCAGGTCCCC . 164.0 52.0 153.0 0.0 . 80 . . Atlas-SNP PSMB3 5691 hgsc.bcm.edu hg19 17 36912245 36912245 + Splice_Site SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PSMB3 NM_002795 exon3 c.296+2T>C . AAACGGTGAGTGC . 72.0 23.0 81.0 0.0 . 9 . . Atlas-SNP TOP2A 7153 hgsc.bcm.edu hg19 17 38564371 38564371 + Nonsense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TOP2A NM_001067 exon12 c.C1348T p.R450X AGTTTCGGCCCCC . 227.0 43.0 200.0 0.0 . 124 . . Atlas-SNP KRT12 3859 hgsc.bcm.edu hg19 17 39019563 39019563 + Silent SNP G G A rs373922617 alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KRT12 NM_000223 exon6 c.C1128T p.A376A GCCCTCGGCTTCG . 150.0 55.0 140.0 0.0 . 53 . . Atlas-SNP KCNH4 23415 hgsc.bcm.edu hg19 17 40315341 40315341 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KCNH4 NM_012285 exon14 c.G2489A p.G830D TCAATGCCATCCA . 45.0 12.0 52.0 0.0 . 105 . . Atlas-SNP AOC2 314 hgsc.bcm.edu hg19 17 41001289 41001289 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da AOC2,colon,carcinoma,0,1 AOC2 NM_009590 exon2 c.C1775T p.A592V CTAATGCGTGGGG . 100.0 24.0 83.0 0.0 . 61 . . Atlas-SNP TMUB2 79089 hgsc.bcm.edu hg19 17 42266521 42266521 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMUB2 NM_001076674 exon3 c.C167T p.T56I TCTCTACCTACGT . 75.0 11.0 80.0 0.0 . 29 . . Atlas-SNP FMNL1 752 hgsc.bcm.edu hg19 17 43322423 43322423 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FMNL1 NM_005892 exon21 c.G2676A p.P892P GTACCCGCAACTC . 107.0 18.0 107.0 0.0 . 78 . . Atlas-SNP NSF 4905 hgsc.bcm.edu hg19 17 44803929 44803929 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NSF NM_006178 exon16 c.G1776A p.A592A TGATGCGTACAAA . 94.0 30.0 92.0 0.0 . 27 . . Atlas-SNP TMEM92 162461 hgsc.bcm.edu hg19 17 48356249 48356249 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TMEM92 NM_153229 exon4 c.G258A p.P86P AGAGCCGGAGCCA . 43.0 6.0 60.0 0.0 . 13 . . Atlas-SNP ANKFN1 162282 hgsc.bcm.edu hg19 17 54543932 54543932 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ANKFN1 NM_153228 exon14 c.G1782T p.Q594H CATCCAGGTATGT . 102.0 11.0 90.0 0.0 . 115 . . Atlas-SNP BZRAP1 9256 hgsc.bcm.edu hg19 17 56385233 56385233 + Nonsense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BZRAP1 NM_004758 exon23 c.C4801T p.R1601X GGACTCGGACACC . 76.0 17.0 91.0 0.0 . 287 . . Atlas-SNP MTMR4 9110 hgsc.bcm.edu hg19 17 56584581 56584581 + Missense_Mutation SNP A A C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MTMR4 NM_004687 exon9 c.T765G p.I255M TTTAGCAATGGAC . 88.0 27.0 97.0 0.0 . 91 . . Atlas-SNP TEX2 55852 hgsc.bcm.edu hg19 17 62272409 62272409 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TEX2,NS,carcinoma,+1,1 TEX2 NM_018469 exon3 c.C1691T p.A564V AAAGTCGCATGGT . 87.0 8.0 98.0 0.0 . 89 . . Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65924473 65924473 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BPTF NM_004459 exon18 c.A6132G p.K2044K TTAGAAACGACTG . 217.0 24.0 222.0 0.0 . 415 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 67029868 67029868 + Silent SNP G G A rs146940647 bycluster TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABCA9 NM_080283 exon9 c.C1275T p.P425P CTTACCGGGCAAA . 268.0 41.0 297.0 0.0 . 192 . G|1.000;A|0.000 Atlas-SNP GRIN2C 2905 hgsc.bcm.edu hg19 17 72845978 72845978 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GRIN2C NM_000835 exon7 c.C1586T p.T529M ATGCCCGTCTCCA . 88.0 9.0 81.0 0.0 . 144 . . Atlas-SNP EVPL 2125 hgsc.bcm.edu hg19 17 74005326 74005326 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da EVPL,NS,carcinoma,0,1 EVPL NM_001988 exon22 c.C3960T p.H1320H CTTCTCGTGGCGC . 19.0 4.0 25.0 0.0 . 155 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76535911 76535911 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DNAH17 NM_173628 exon18 c.T2584C p.Y862H TGACATAATCCTT . 310.0 118.0 309.0 0.0 . 347 . . Atlas-SNP CBX8 57332 hgsc.bcm.edu hg19 17 77769341 77769341 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CBX8 NM_020649 exon5 c.A263G p.K88R TTGGCCTTTGCCT . 38.0 5.0 37.0 0.0 . 42 . . Atlas-SNP AATK 9625 hgsc.bcm.edu hg19 17 79096552 79096552 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AATK NM_001080395 exon11 c.T1184C p.L395P TAGGACAGCAGCA . 83.0 36.0 84.0 0.0 . 102 . . Atlas-SNP GAREM 64762 hgsc.bcm.edu hg19 18 29850320 29850320 + Silent SNP G G A rs368693154 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_022751 exon5 c.C1593T p.N531N TGGGGCGTTCAGG . 112.0 22.0 131.0 0.0 . . . . Atlas-SNP ZBTB7C 201501 hgsc.bcm.edu hg19 18 45566490 45566490 + Missense_Mutation SNP T T G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZBTB7C NM_001039360 exon2 c.A989C p.D330A CCGTAGTCGTTCT . 62.0 8.0 48.0 0.0 . 73 . . Atlas-SNP MEX3C 51320 hgsc.bcm.edu hg19 18 48723154 48723154 + Silent SNP G G C rs62092914 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da MEX3C_ENST00000406189,NS,carcinoma,0,1 MEX3C NM_016626 exon1 c.C537G p.A179A CGCCGCGGCCGCC . 56.0 11.0 37.0 0.0 . 77 . . Atlas-SNP RTTN 25914 hgsc.bcm.edu hg19 18 67753861 67753861 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RTTN NM_173630 exon32 c.T4362C p.D1454D AGTATAATCCTTT . 307.0 47.0 294.0 0.0 . 184 . . Atlas-SNP PPAP2C 8612 hgsc.bcm.edu hg19 19 282794 282794 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPAP2C NM_177543 exon4 c.G561A p.S187S GTGTCCCGAGTAG . 115.0 25.0 90.0 0.0 . 38 . . Atlas-SNP ODF3L2 284451 hgsc.bcm.edu hg19 19 464152 464152 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ODF3L2 NM_182577 exon4 c.C562T p.R188C GGGTGCGGCCCAC . 64.0 19.0 69.0 0.0 . 18 . . Atlas-SNP REEP6 92840 hgsc.bcm.edu hg19 19 1495386 1495386 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . REEP6 NM_138393 exon2 c.C209T p.S70L ATGCCTCGTGAGT . 51.0 8.0 42.0 0.0 . 21 . . Atlas-SNP TLE2 7089 hgsc.bcm.edu hg19 19 3006585 3006585 + Missense_Mutation SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TLE2 NM_001144761 exon16 c.C1375A p.P459T GCCGCGGGATGCC . 222.0 84.0 227.0 0.0 . 35 . . Atlas-SNP CATSPERD 257062 hgsc.bcm.edu hg19 19 5778650 5778650 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TMEM146,NS,lymphoid_neoplasm,0,2 . NM_152784 exon22 c.G2360A p.R787H CGGGACGCCACCG . 174.0 31.0 161.0 0.0 . . . . Atlas-SNP PSPN 5623 hgsc.bcm.edu hg19 19 6375770 6375770 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PSPN NM_004158 exon1 c.G91A p.V31M CGGCCACGGGAAC . 222.0 45.0 220.0 0.0 . 5 . . Atlas-SNP XAB2 56949 hgsc.bcm.edu hg19 19 7687478 7687478 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . XAB2 NM_020196 exon11 c.T1441C p.Y481H ACTTGTACACGCG . 39.0 5.0 35.0 0.0 . 69 . . Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8145942 8145942 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FBN3 NM_032447 exon58 c.C7398T p.G2466G GAAGGCGCCCACA . 35.0 6.0 24.0 0.0 . 300 . . Atlas-SNP OR7D4 125958 hgsc.bcm.edu hg19 19 9324680 9324680 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da OR7D4,NS,carcinoma,0,1 OR7D4 NM_001005191 exon1 c.C834T p.Y278Y CATGGCGTACATC . 68.0 27.0 66.0 0.0 . 66 . . Atlas-SNP DOCK6 57572 hgsc.bcm.edu hg19 19 11322519 11322519 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DOCK6 NM_020812 exon37 c.C4684T p.L1562L CCGTCAGGATCAT . 69.0 11.0 88.0 0.0 . 104 . . Atlas-SNP RFX1 5989 hgsc.bcm.edu hg19 19 14090352 14090352 + Missense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RFX1 NM_002918 exon7 c.A741T p.R247S CACAGATCTCTGG . 89.0 11.0 76.0 0.0 . 63 . . Atlas-SNP JAK3 3718 hgsc.bcm.edu hg19 19 17942173 17942173 + Missense_Mutation SNP G G A rs200202992 alternate_allele TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da JAK3_ENST00000458235,head_neck,carcinoma,0,3 JAK3 NM_000215 exon21 c.C2842T p.R948C GGTCGCGGTGCAC . 55.0 4.0 66.0 1.0 . 341 . . Atlas-SNP MAST3 23031 hgsc.bcm.edu hg19 19 18218416 18218416 + Missense_Mutation SNP G G A rs368179436 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MAST3 NM_015016 exon2 c.G59A p.R20H TGCCACGCCGAGG . 52.0 7.0 68.0 0.0 . 83 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23543832 23543832 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da ZNF91_ENST00000300619,NS,carcinoma,0,3 ZNF91 NM_003430 exon4 c.G1949A p.R650K TGAATTCTCTTAT . 179.0 27.0 162.0 0.0 . 349 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935510 30935510 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF536 NM_014717 exon2 c.C1041T p.C347C CCGCTGCGAGGTG . 66.0 14.0 54.0 0.0 . 424 . . Atlas-SNP PEPD 5184 hgsc.bcm.edu hg19 19 34003533 34003533 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PEPD NM_000285 exon2 c.G167A p.R56H CAGTAGCGCTGAG . 76.0 12.0 59.0 0.0 . 48 . . Atlas-SNP LSM14A 26065 hgsc.bcm.edu hg19 19 34685491 34685491 + Missense_Mutation SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LSM14A NM_001114093 exon2 c.T230A p.V77D TTACTGTTTGTGA . 127.0 40.0 126.0 0.0 . 44 . . Atlas-SNP ZNF568 374900 hgsc.bcm.edu hg19 19 37440932 37440932 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF568 NM_198539 exon7 c.C877T p.L293F TCAAACCTTATTA . 94.0 29.0 99.0 0.0 . 106 . . Atlas-SNP ZNF585A 199704 hgsc.bcm.edu hg19 19 37643170 37643170 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF585A NM_199126 exon6 c.A1466G p.H489R CCAGTGTGAATTT . 283.0 37.0 261.0 0.0 . 117 . . Atlas-SNP ZNF793 390927 hgsc.bcm.edu hg19 19 38028487 38028487 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF793 NM_001013659 exon8 c.A927G p.R309R AGAGAGACCCTTT . 93.0 18.0 114.0 0.0 . 50 . . Atlas-SNP ECH1 1891 hgsc.bcm.edu hg19 19 39307754 39307754 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ECH1 NM_001398 exon6 c.C539T p.T180I CAGGCGGTGACAA . 107.0 37.0 86.0 0.0 . 14 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40392050 40392050 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FCGBP NM_003890 exon17 c.C8336T p.A2779V ACGCAGGCTTGGC . 207.0 40.0 212.0 0.0 . 416 . . Atlas-SNP ZNF227 7770 hgsc.bcm.edu hg19 19 44740750 44740750 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF227 NM_182490 exon6 c.A2167G p.K723E TGTGGTAAGGCCT . 88.0 34.0 104.0 0.0 . 62 . . Atlas-SNP SYMPK 8189 hgsc.bcm.edu hg19 19 46318890 46318890 + Silent SNP T T A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SYMPK NM_004819 exon27 c.A3753T p.G1251G ATCTTCTCCAACA . 102.0 19.0 112.0 0.0 . 104 . . Atlas-SNP KDELR1 10945 hgsc.bcm.edu hg19 19 48887541 48887541 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KDELR1 NM_006801 exon4 c.G550A p.G184S CCAGGCCTGCCAC . 117.0 19.0 143.0 0.0 . 26 . . Atlas-SNP PNKP 11284 hgsc.bcm.edu hg19 19 50370458 50370458 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PNKP NM_007254 exon2 c.G4T p.G2C CCTCGCCCATCCT . 113.0 20.0 93.0 0.0 . 71 . . Atlas-SNP ZNF528 84436 hgsc.bcm.edu hg19 19 52919436 52919436 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF528 NM_032423 exon7 c.C1331T p.T444I GTGGCACAGCGTT . 126.0 15.0 128.0 0.0 . 95 . . Atlas-SNP ZNF534 147658 hgsc.bcm.edu hg19 19 52941014 52941014 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF534 NM_001143939 exon4 c.G340A p.G114R AGTGCAGGAAACA . 274.0 88.0 306.0 0.0 . 105 . . Atlas-SNP MYADM 91663 hgsc.bcm.edu hg19 19 54377623 54377623 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MYADM NM_138373 exon3 c.C840T p.S280S CTGCAGCCGCAGC . 86.0 13.0 73.0 0.0 . 39 . . Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54406355 54406355 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PRKCG NM_002739 exon15 c.C1604T p.S535F GGAAGTCTGTCGA . 144.0 44.0 113.0 0.0 . 246 . . Atlas-SNP LENG8 114823 hgsc.bcm.edu hg19 19 54965734 54965734 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da LENG8,NS,carcinoma,0,1 LENG8 NM_052925 exon6 c.G552A p.Q184Q CCCTCAGCCTGGG . 123.0 26.0 136.0 0.0 . 73 . . Atlas-SNP DNAAF3 352909 hgsc.bcm.edu hg19 19 55676758 55676758 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001256714 exon4 c.C506T p.P169L TTCTCCGGTTCCT . 95.0 11.0 73.0 0.0 . . . . Atlas-SNP C20orf96 140680 hgsc.bcm.edu hg19 20 256674 256674 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C20orf96 NM_153269 exon10 c.G966A p.E322E TTGGAGCTCTTCC . 86.0 38.0 126.0 0.0 . 28 . . Atlas-SNP CENPB 1059 hgsc.bcm.edu hg19 20 3766272 3766272 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CENPB NM_001810 exon1 c.G859A p.A287T ACTCTGCAGCCAT . 233.0 16.0 198.0 0.0 . 24 . . Atlas-SNP PROKR2 128674 hgsc.bcm.edu hg19 20 5294612 5294612 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da PROKR2,NS,carcinoma,0,1 PROKR2 NM_144773 exon1 c.G404A p.R135H ACGGTGCGCAGGT . 173.0 23.0 121.0 1.0 . 90 . . Atlas-SNP SSTR4 6754 hgsc.bcm.edu hg19 20 23017003 23017003 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da SSTR4,NS,carcinoma,0,2 SSTR4 NM_001052 exon1 c.G883A p.V295M AACCACGTGTCCC . 86.0 17.0 80.0 0.0 . 83 . . Atlas-SNP CD93 22918 hgsc.bcm.edu hg19 20 23065156 23065156 + Silent SNP G G T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CD93 NM_012072 exon1 c.C1674A p.P558P CTCCTGGGGGCCA . 52.0 9.0 48.0 0.0 . 84 . . Atlas-SNP GSS 2937 hgsc.bcm.edu hg19 20 33519901 33519901 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GSS NM_000178 exon10 c.T870C p.H290H GGCAGCATGTGAC . 271.0 37.0 248.0 0.0 . 33 . . Atlas-SNP FAM65C 140876 hgsc.bcm.edu hg19 20 49225478 49225478 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM65C NM_080829 exon9 c.G643A p.A215T GGCGTGCGTAGCC . 91.0 18.0 98.0 0.0 . 87 . . Atlas-SNP ZNF217 7764 hgsc.bcm.edu hg19 20 52193651 52193651 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF217 NM_006526 exon3 c.G1652A p.S551N TGCGCACTGTCAG . 89.0 28.0 74.0 0.0 . 227 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60888755 60888755 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LAMA5 NM_005560 exon63 c.C8608T p.R2870W CTGGCCGCAGGTT . 70.0 7.0 41.0 0.0 . 268 . . Atlas-SNP SRMS 6725 hgsc.bcm.edu hg19 20 62172859 62172859 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SRMS NM_080823 exon6 c.G1061A p.R354Q ACGTTCCGGGCGG . 124.0 26.0 123.0 0.0 . 48 . . Atlas-SNP TNFRSF6B 8771 hgsc.bcm.edu hg19 20 62328389 62328389 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TNFRSF6B NM_003823 exon1 c.A269G p.Y90C GCCGCTACTGCAA . 115.0 16.0 102.0 0.0 . 22 . . Atlas-SNP ABHD16B 140701 hgsc.bcm.edu hg19 20 62493729 62493729 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ABHD16B NM_080622 exon1 c.C836T p.A279V CGCTGGCGCTGAA . 57.0 9.0 51.0 0.0 . 22 . . Atlas-SNP KRTAP13-2 337959 hgsc.bcm.edu hg19 21 31744329 31744329 + Missense_Mutation SNP G G A rs202124632 bycluster TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KRTAP13-2 NM_181621 exon1 c.C203T p.T68M TAGGACGTCTGGC . 116.0 23.0 145.0 0.0 . 29 . G|0.999;A|0.001 Atlas-SNP C21orf2 755 hgsc.bcm.edu hg19 21 45750586 45750586 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C21orf2 NM_001271441 exon6 c.A759G p.S253S GCCCTGTGAGGCT . 101.0 21.0 108.0 0.0 . 10 . . Atlas-SNP SLC19A1 6573 hgsc.bcm.edu hg19 21 46951806 46951806 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC19A1 NM_001205206 exon3 c.A446G p.Y149C CGCTGGTAGCGCG . 48.0 5.0 67.0 0.0 . 53 . . Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47959885 47959885 + Missense_Mutation SNP C C G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DIP2A NM_206891 exon17 c.C2017G p.L673V GAGGCGCTGACTG . 58.0 4.0 49.0 0.0 . 332 . . Atlas-SNP PEX26 55670 hgsc.bcm.edu hg19 22 18561184 18561184 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PEX26 NM_001127649 exon1 c.G42A p.G14G CAGGGGGCTCGGG . 83.0 32.0 57.0 0.0 . 27 . . Atlas-SNP HIRA 7290 hgsc.bcm.edu hg19 22 19344473 19344473 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HIRA NM_003325 exon19 c.C2336T p.T779I TGCAAAGTAGAGA . 110.0 9.0 78.0 0.0 . 100 . . Atlas-SNP RTDR1 27156 hgsc.bcm.edu hg19 22 23406095 23406095 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RTDR1 NM_014433 exon5 c.C638T p.A213V AGGAGCGCACGGG . 88.0 31.0 77.0 0.0 . 39 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26159258 26159258 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da MYO18B,NS,carcinoma,0,1 MYO18B NM_032608 exon3 c.C100A p.P34T GTCATCCCAGGGG . 118.0 21.0 118.0 0.0 . 322 . . Atlas-SNP NF2 4771 hgsc.bcm.edu hg19 22 30069387 30069387 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da NF2_ENST00000403999,NS,carcinoma,0,4 NF2 NM_000268 exon12 c.C1252T p.R418C GCGATTCGCACGG . 155.0 20.0 136.0 0.0 . 1312 . . Atlas-SNP SEC14L3 266629 hgsc.bcm.edu hg19 22 30857443 30857443 + Missense_Mutation SNP G G A rs144684185 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SEC14L3 NM_174975 exon11 c.C935T p.A312V ATGTCCGCACCAT . 78.0 16.0 65.0 0.0 . 46 . G|1.000;A|0.000 Atlas-SNP TIMP3 7078 hgsc.bcm.edu hg19 22 33255323 33255323 + Missense_Mutation SNP G G C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TIMP3,NS,adenoma,0,1 TIMP3 NM_000362 exon5 c.G595C p.A199P GGATGGGCCCCCC . 49.0 18.0 27.0 0.0 . 31 . . Atlas-SNP CACNG2 10369 hgsc.bcm.edu hg19 22 36960548 36960548 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CACNG2 NM_006078 exon4 c.C822T p.S274S GTCCCTGCTGAGC . 143.0 22.0 119.0 0.0 . 43 . . Atlas-SNP CARD10 29775 hgsc.bcm.edu hg19 22 37904630 37904630 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CARD10 NM_014550 exon5 c.T969C p.H323H CCAGTCATGCTCT . 61.0 21.0 46.0 0.0 . 55 . . Atlas-SNP CDC42EP1 11135 hgsc.bcm.edu hg19 22 37964226 37964226 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CDC42EP1 NM_152243 exon3 c.C575T p.S192F CTGACTCTCTCTT . 70.0 19.0 67.0 0.0 . 53 . . Atlas-SNP APOBEC3G 60489 hgsc.bcm.edu hg19 22 39482298 39482298 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . APOBEC3G NM_021822 exon6 c.C750T p.H250H TAAACACGGTTTC . 131.0 22.0 126.0 0.0 . 69 . . Atlas-SNP EFCAB6 64800 hgsc.bcm.edu hg19 22 44168976 44168976 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . EFCAB6 NM_022785 exon4 c.T147C p.A49A TGCAACAGCTGTG . 113.0 14.0 99.0 0.0 . 177 . . Atlas-SNP IL3RA 3563 hgsc.bcm.edu hg19 X 1484120 1484120 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IL3RA NM_002183 exon9 c.C849T p.S283S CTTGAGCGCCTGG . 292.0 16.0 260.0 0.0 . 49 . . Atlas-SNP FAM9A 171482 hgsc.bcm.edu hg19 X 8763403 8763403 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM9A NM_174951 exon7 c.G547A p.A183T TCTCTGCGATGTA . 84.0 28.0 91.0 0.0 . 57 . . Atlas-SNP DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765399 27765399 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DCAF8L2 NM_001136533 exon1 c.A387G p.E129E GGAGGAAGAGGAG . 34.0 5.0 33.0 0.0 . 79 . . Atlas-SNP FAM47A 158724 hgsc.bcm.edu hg19 X 34149344 34149344 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FAM47A NM_203408 exon1 c.G1052A p.R351H TCCGAGCGGAGAC . 157.0 26.0 130.0 0.0 . 249 . . Atlas-SNP RP2 6102 hgsc.bcm.edu hg19 X 46713333 46713333 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RP2 NM_006915 exon2 c.T525C p.H175H CATTCATGACTTT . 225.0 9.0 201.0 0.0 . 37 . . Atlas-SNP TIMP1 7076 hgsc.bcm.edu hg19 X 47444965 47444965 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TIMP1 NM_003254 exon5 c.C352T p.H118Y CTCTTGCACATCA . 240.0 48.0 233.0 0.0 . 12 . . Atlas-SNP GRIPAP1 56850 hgsc.bcm.edu hg19 X 48847397 48847397 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GRIPAP1 NM_020137 exon7 c.A583G p.K195E CCCATTTCAGCTC . 176.0 47.0 169.0 0.0 . 128 . . Atlas-SNP PRICKLE3 4007 hgsc.bcm.edu hg19 X 49032590 49032590 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PRICKLE3 NM_006150 exon9 c.G1280A p.R427H AGAAAGCGGGAGG . 92.0 19.0 98.0 0.0 . 59 . . Atlas-SNP CACNA1F 778 hgsc.bcm.edu hg19 X 49082873 49082873 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CACNA1F NM_005183 exon11 c.C1494T p.C498C TCACAGGCAGCGT . 85.0 5.0 74.0 0.0 . 218 . . Atlas-SNP HEPH 9843 hgsc.bcm.edu hg19 X 65483530 65483530 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HEPH NM_138737 exon20 c.G3406A p.A1136T GAAAAAGGTACGT . 286.0 81.0 238.0 0.0 . 224 . . Atlas-SNP HDX 139324 hgsc.bcm.edu hg19 X 83723918 83723918 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HDX NM_144657 exon3 c.C813T p.S271S GTAATCGCTAACT . 159.0 35.0 166.0 0.0 . 124 . . Atlas-SNP ESX1 80712 hgsc.bcm.edu hg19 X 103498837 103498837 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ESX1 NM_153448 exon2 c.G504A p.A168A TTACCGCGCCACA . 165.0 50.0 152.0 0.0 . 57 . . Atlas-SNP TEX13A 56157 hgsc.bcm.edu hg19 X 104464092 104464092 + Nonsense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TEX13A NM_031274 exon5 c.C784T p.Q262X CCTTCTGCCCCCA . 169.0 45.0 160.0 0.0 . 55 . . Atlas-SNP CAPN6 827 hgsc.bcm.edu hg19 X 110491972 110491972 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CAPN6 NM_014289 exon10 c.C1309T p.H437Y GGTGGTGGAGGCG . 157.0 55.0 140.0 0.0 . 120 . . Atlas-SNP MCTS1 28985 hgsc.bcm.edu hg19 X 119739358 119739358 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MCTS1 NM_001137554 exon2 c.T111C p.I37I AGGTATTGAACCA . 479.0 121.0 399.0 1.0 . 40 . . Atlas-SNP C1GALT1C1 29071 hgsc.bcm.edu hg19 X 119760167 119760167 + Missense_Mutation SNP C C G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C1GALT1C1 NM_152692 exon3 c.G855C p.Q285H ATGCATCTGATTT . 344.0 111.0 271.0 0.0 . 22 . . Atlas-SNP GLUD2 2747 hgsc.bcm.edu hg19 X 120181885 120181885 + Missense_Mutation SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GLUD2 NM_012084 exon1 c.T347C p.L116P ATGTGCTGAGTCT . 533.0 92.0 484.0 0.0 . 89 . . Atlas-SNP STAG2 10735 hgsc.bcm.edu hg19 X 123191803 123191803 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . STAG2 NM_001042749 exon15 c.G1392A p.L464L GACATTGGTTTTT . 132.0 14.0 126.0 0.0 . 309 . . Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123517731 123517731 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001163278 exon30 c.C7050T p.G2350G GATATCGCCATAA . 210.0 25.0 179.0 0.0 . . . . Atlas-SNP OCRL 4952 hgsc.bcm.edu hg19 X 128701327 128701327 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OCRL NM_000276 exon14 c.C1453T p.R485W ACAGACCGGTGGG . 518.0 161.0 469.0 0.0 . 117 . . Atlas-SNP BCORL1 63035 hgsc.bcm.edu hg19 X 129185869 129185869 + Silent SNP T T C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BCORL1 NM_021946 exon11 c.T4731C p.H1577H CCTACATAATCCT . 207.0 9.0 195.0 0.0 . 213 . . Atlas-SNP ENOX2 10495 hgsc.bcm.edu hg19 X 129759306 129759306 + Missense_Mutation SNP C C A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ENOX2 NM_182314 exon16 c.G1815T p.E605D CAAGCCCTCGAAG . 314.0 13.0 308.0 0.0 . 70 . . Atlas-SNP TFDP3 51270 hgsc.bcm.edu hg19 X 132352255 132352255 + Silent SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TFDP3 NM_016521 exon1 c.C33T p.N11N TTCTTCGTTAGCT . 268.0 85.0 259.0 0.0 . 92 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134987456 134987456 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SAGE1 NM_018666 exon5 c.G359A p.G120D AAAATGGCCAATC . 107.0 13.0 108.0 0.0 . 160 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135431189 135431189 + Missense_Mutation SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GPR112 NM_153834 exon6 c.A5324G p.K1775R GCTTTAAGAGTGC . 339.0 94.0 293.0 0.0 . 459 . . Atlas-SNP ZIC3 7547 hgsc.bcm.edu hg19 X 136648912 136648912 + Missense_Mutation SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZIC3 NM_003413 exon1 c.C62T p.A21V TCGGCGCGCCGCG . 151.0 16.0 126.0 0.0 . 93 . . Atlas-SNP SOX3 6658 hgsc.bcm.edu hg19 X 139586440 139586440 + Silent SNP C C T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SOX3 NM_005634 exon1 c.G786A p.T262T CACGTGCGTGTAC . 168.0 21.0 160.0 0.0 . 44 . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142717165 142717165 + Missense_Mutation SNP G G A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLITRK4 NM_001184750 exon2 c.C1760T p.P587L GCAGACGGCTTAT . 180.0 20.0 145.0 0.0 . 162 . . Atlas-SNP MTMR1 8776 hgsc.bcm.edu hg19 X 149931129 149931129 + Missense_Mutation SNP G G A rs200100741 TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MTMR1 NM_003828 exon15 c.G1925A p.R642H CCACGCGCGCCGT . 175.0 53.0 151.0 0.0 . 82 . . Atlas-SNP ATP6 0 hgsc.bcm.edu hg19 MT 8673 8673 + Silent SNP A A G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . ENST00000361899 exon1 c.A147G p.L49L ATGACTAATCAAA . 51.0 5.0 24.0 0.0 . . . . Atlas-SNP HEXDC 284004 hgsc.bcm.edu hg19 17 80400207 80400208 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 HEXDC NM_173620 exon12 c.1497_1498insC p.L499fs . . 96.0 17.0 96.0 0.0 . 43 . . Atlas-INDEL SPAG17 200162 hgsc.bcm.edu hg19 1 118539117 118539117 + Frame_Shift_Del DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPAG17 NM_206996 exon34 c.4930delG p.V1644fs . . 299.0 42.0 175.0 0.0 . 263 . . Atlas-INDEL PPP6R2 9701 hgsc.bcm.edu hg19 22 50879410 50879410 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PPP6R2 NM_001242898 exon22 c.2533delG p.A845fs . . 87.0 18.0 84.0 0.0 . 71 . . Atlas-INDEL PHF21A 51317 hgsc.bcm.edu hg19 11 45955607 45955607 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PHF21A NM_001101802 exon18 c.1956delT p.P652fs . . 83.0 25.0 72.0 0.0 . 107 . . Atlas-INDEL DMRTC2 63946 hgsc.bcm.edu hg19 19 42352585 42352585 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DMRTC2 NM_001040283 exon4 c.435delA p.T145fs . . 257.0 45.0 254.0 0.0 . 31 . . Atlas-INDEL MPP5 64398 hgsc.bcm.edu hg19 14 67768752 67768755 + Frame_Shift_Del DEL GAGA GAGA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 GAGA GAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MPP5 NM_022474 exon6 c.717_720del p.239_240del . . 123.0 50.0 195.0 0.0 . 46 . . Atlas-INDEL FAM217A 222826 hgsc.bcm.edu hg19 6 4069257 4069259 + In_Frame_Del DEL ATC ATC - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 ATC ATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_173563 exon7 c.1199_1201del p.400_401del . . 177.0 32.0 135.0 0.0 . . . . Atlas-INDEL BAP1 8314 hgsc.bcm.edu hg19 3 52437802 52437803 + Frame_Shift_Del DEL TT TT - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BAP1 NM_004656 exon13 c.1359_1360del p.453_454del . . 52.0 25.0 52.0 0.0 . 371 . . Atlas-INDEL RXRB 6257 hgsc.bcm.edu hg19 6 33164232 33164233 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RXRB NM_021976 exon5 c.972_973insG p.G324fs . . 113.0 10.0 85.0 0.0 . 34 . . Atlas-INDEL SAMD7 344658 hgsc.bcm.edu hg19 3 169656232 169656233 + Frame_Shift_Ins INS - - T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SAMD7 NM_182610 exon9 c.1279_1280insT p.I427fs . . 139.0 38.0 157.0 0.0 . 69 . . Atlas-INDEL DENND4B 9909 hgsc.bcm.edu hg19 1 153916546 153916547 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DENND4B NM_014856 exon2 c.305_306insC p.L102fs . . 167.0 24.0 132.0 0.0 . 210 . . Atlas-INDEL THSD4 79875 hgsc.bcm.edu hg19 15 72057470 72057470 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . THSD4 NM_024817 exon15 c.2700delA p.K900fs . . 113.0 20.0 136.0 0.0 . 75 . . Atlas-INDEL LRRC8D 55144 hgsc.bcm.edu hg19 1 90400489 90400498 + Frame_Shift_Del DEL ACGGCACTAA ACGGCACTAA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 ACGGCACTAA ACGGCACTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRRC8D NM_018103 exon3 c.1861_1870del p.621_624del . . 152.0 16.0 107.0 0.0 . 78 . . Atlas-INDEL PABPC1L2A 340529 hgsc.bcm.edu hg19 X 72298895 72298897 + In_Frame_Del DEL AGA AGA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001012977 exon1 c.330_332del p.110_111del . . 1725.0 152.0 1524.0 0.0 . . . . Atlas-INDEL SPAG9 9043 hgsc.bcm.edu hg19 17 49071264 49071266 + In_Frame_Del DEL TTC TTC - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TTC TTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPAG9 NM_001130528 exon19 c.2258_2260del p.753_754del . . 105.0 12.0 117.0 0.0 . 151 . . Atlas-INDEL IRF2BP1 26145 hgsc.bcm.edu hg19 19 46387532 46387532 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IRF2BP1 NM_015649 exon1 c.1502delT p.L501fs . . 87.0 16.0 81.0 0.0 . 23 . . Atlas-INDEL TENM3 55714 hgsc.bcm.edu hg19 4 183609359 183609359 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001080477 exon11 c.2075delT p.M692fs . . 49.0 16.0 62.0 0.0 . . . . Atlas-INDEL MICALL2 79778 hgsc.bcm.edu hg19 7 1487299 1487299 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MICALL2 NM_182924 exon4 c.438delA p.P146fs . . 157.0 47.0 109.0 0.0 . 63 . . Atlas-INDEL SPACA4 171169 hgsc.bcm.edu hg19 19 49110275 49110275 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SPACA4 NM_133498 exon1 c.39delG p.L13fs . . 41.0 15.0 38.0 0.0 . 9 . . Atlas-INDEL AKAP17A 8227 hgsc.bcm.edu hg19 X 1712781 1712781 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AKAP17A NM_005088 exon2 c.425delC p.P142fs . . 167.0 26.0 161.0 0.0 . 46 . . Atlas-INDEL DEPDC1 55635 hgsc.bcm.edu hg19 1 68948426 68948427 + Frame_Shift_Ins INS - - T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DEPDC1 NM_001114120 exon8 c.1065_1066insA p.N355fs . . 77.0 21.0 148.0 0.0 . 102 . . Atlas-INDEL C11orf54 28970 hgsc.bcm.edu hg19 11 93486913 93486914 + Frame_Shift_Ins INS - - A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C11orf54 NM_014039 exon4 c.220_221insA p.Q74fs . . 103.0 30.0 100.0 0.0 . 23 . . Atlas-INDEL USP44 84101 hgsc.bcm.edu hg19 12 95927482 95927483 + Frame_Shift_Ins INS - - T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . USP44 NM_032147 exon2 c.551_552insA p.I184fs . . 92.0 41.0 89.0 0.0 . 83 . . Atlas-INDEL PABPC1L2B 645974 hgsc.bcm.edu hg19 X 72223807 72223809 + In_Frame_Del DEL TCT TCT - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TCT TCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_001042506 exon1 c.325_327del p.109_109del . . 1742.0 173.0 1522.0 0.0 . . . . Atlas-INDEL KLK6 5653 hgsc.bcm.edu hg19 19 51462437 51462437 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . KLK6 NM_001012964 exon6 c.719delC p.T240fs . . 145.0 30.0 155.0 0.0 . 35 . . Atlas-INDEL TRIOBP 11078 hgsc.bcm.edu hg19 22 38130772 38130773 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . TRIOBP NM_001039141 exon9 c.4429_4430insG p.W1477fs . . 89.0 13.0 99.0 0.0 . 262 . . Atlas-INDEL NDC80 10403 hgsc.bcm.edu hg19 18 2599168 2599169 + Frame_Shift_Del DEL TA TA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NDC80 NM_006101 exon12 c.1371_1372del p.457_458del . . 63.0 13.0 59.0 0.0 . 62 . . Atlas-INDEL PKN3 29941 hgsc.bcm.edu hg19 9 131480648 131480650 + In_Frame_Del DEL AGA AGA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AGA AGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PKN3 NM_013355 exon17 c.2029_2031del p.677_677del . . 71.0 11.0 100.0 0.0 . 62 . . Atlas-INDEL CDC14A 8556 hgsc.bcm.edu hg19 1 100889837 100889837 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 CDC14A NM_033313 exon5 c.368delA p.N123fs . . 105.0 40.0 119.0 0.0 . 65 . . Atlas-INDEL AIM2 9447 hgsc.bcm.edu hg19 1 159033322 159033322 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AIM2 NM_004833 exon5 c.960delT p.N320fs . . 115.0 37.0 92.0 0.0 . 70 . . Atlas-INDEL USH2A 7399 hgsc.bcm.edu hg19 1 216062118 216062118 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . USH2A NM_206933 exon41 c.7874delA p.E2625fs . . 170.0 27.0 114.0 0.0 . 1168 . . Atlas-INDEL CDC42EP1 11135 hgsc.bcm.edu hg19 22 37962638 37962639 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 CDC42EP1 NM_152243 exon2 c.282_283insC p.A94fs . . 166.0 42.0 194.0 0.0 . 53 . . Atlas-INDEL BEX4 56271 hgsc.bcm.edu hg19 X 102471235 102471236 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BEX4 NM_001080425 exon3 c.154_155insG p.R52fs . . 396.0 52.0 349.0 0.0 . 15 . . Atlas-INDEL ADAMTSL1 92949 hgsc.bcm.edu hg19 9 18777687 18777687 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ADAMTSL1 NM_001040272 exon19 c.3459delC p.A1153fs . . 69.0 18.0 89.0 0.0 . 306 . . Atlas-INDEL C11orf57 55216 hgsc.bcm.edu hg19 11 111953315 111953316 + Frame_Shift_Ins INS - - A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 C11orf57 NM_001082969 exon6 c.501_502insA p.H167fs . . 361.0 86.0 309.0 0.0 . 41 . . Atlas-INDEL FGFR2 2263 hgsc.bcm.edu hg19 10 123310909 123310929 + In_Frame_Del DEL GTTGGCCGCAGGCACAGCATG GTTGGCCGCAGGCACAGCATG - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 GTTGGCCGCAGGCACAGCATG GTTGGCCGCAGGCACAGCATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . FGFR2 NM_000141 exon5 c.500_520del p.167_174del . . 57.0 12.0 98.0 0.0 . 758 . . Atlas-INDEL AHCTF1 25909 hgsc.bcm.edu hg19 1 247024553 247024553 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . AHCTF1 NM_015446 exon29 c.3808delT p.C1270fs . . 287.0 30.0 211.0 0.0 . 187 . . Atlas-INDEL BOP1 23246 hgsc.bcm.edu hg19 8 145512978 145512979 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . BOP1 NM_015201 exon2 c.107_108insC p.L36fs . . 107.0 18.0 56.0 0.0 . 7 . . Atlas-INDEL NES 10763 hgsc.bcm.edu hg19 1 156642804 156642804 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NES NM_006617 exon4 c.1177delA p.T393fs . . 122.0 37.0 76.0 0.0 . 196 . . Atlas-INDEL MPHOSPH10 10199 hgsc.bcm.edu hg19 2 71377061 71377061 + Frame_Shift_Del DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . MPHOSPH10 NM_005791 exon11 c.1961delT p.V654fs . . 381.0 119.0 458.0 0.0 . 81 . . Atlas-INDEL ZNF292 23036 hgsc.bcm.edu hg19 6 87966812 87966812 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF292 NM_015021 exon8 c.3464delA p.Y1155fs . . 68.0 34.0 59.0 0.0 . 479 . . Atlas-INDEL STAG1 10274 hgsc.bcm.edu hg19 3 136240141 136240143 + In_Frame_Del DEL TCA TCA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TCA TCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . STAG1 NM_005862 exon7 c.589_591del p.197_197del . . 247.0 30.0 272.0 0.0 . 135 . . Atlas-INDEL OBSL1 23363 hgsc.bcm.edu hg19 2 220435528 220435528 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . OBSL1 NM_001173431 exon1 c.428delC p.A143fs . . 402.0 61.0 354.0 0.0 . 120 . . Atlas-INDEL IARS2 55699 hgsc.bcm.edu hg19 1 220273982 220273985 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AGAA AGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . IARS2 NM_018060 exon3 c.540_543del p.180_181del . . 329.0 24.0 224.0 0.0 . 106 . . Atlas-INDEL PLAC1L 219990 hgsc.bcm.edu hg19 11 59814440 59814440 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . PLAC1L NM_173801 exon4 c.370delG p.V124fs . . 138.0 37.0 110.0 0.0 . 36 . . Atlas-INDEL ZNF480 147657 hgsc.bcm.edu hg19 19 52825303 52825303 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZNF480 NM_144684 exon5 c.799delG p.V267fs . . 114.0 11.0 114.0 0.0 . 123 . . Atlas-INDEL LRP1 4035 hgsc.bcm.edu hg19 12 57605934 57605934 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LRP1 NM_002332 exon88 c.13383delC p.N4461fs . . 152.0 17.0 181.0 0.0 . 428 . . Atlas-INDEL C9orf129 445577 hgsc.bcm.edu hg19 9 96080811 96080812 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . C9orf129 NM_001098808 exon5 c.460_461insG p.H154fs . . 124.0 20.0 88.0 0.0 . 18 . . Atlas-INDEL GAB2 9846 hgsc.bcm.edu hg19 11 77934490 77934490 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GAB2 NM_080491 exon6 c.1536delT p.P512fs . . 169.0 22.0 154.0 0.0 . 63 . . Atlas-INDEL CLK1 1195 hgsc.bcm.edu hg19 2 201722550 201722550 + Frame_Shift_Del DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CLK1 NM_001162407 exon7 c.850delG p.E284fs . . 119.0 24.0 146.0 0.0 . 103 . . Atlas-INDEL CAPN7 23473 hgsc.bcm.edu hg19 3 15282001 15282001 + Frame_Shift_Del DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . CAPN7 NM_014296 exon13 c.1428delG p.L476fs . . 139.0 10.0 93.0 0.0 . 63 . . Atlas-INDEL LAMA1 284217 hgsc.bcm.edu hg19 18 6942222 6942222 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . LAMA1 NM_005559 exon63 c.9085delT p.C3029fs . . 55.0 10.0 42.0 0.0 . 458 . . Atlas-INDEL ELMSAN1 91748 hgsc.bcm.edu hg19 14 74205773 74205773 + Frame_Shift_Del DEL G G - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . . NM_194278 exon2 c.940delA p.N314fs . . 45.0 18.0 47.0 0.0 . . . . Atlas-INDEL HLCS 3141 hgsc.bcm.edu hg19 21 38128905 38128906 + Frame_Shift_Del DEL TT TT - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HLCS NM_000411 exon11 c.1947_1948del p.649_650del . . 173.0 59.0 196.0 0.0 . 64 . . Atlas-INDEL TRIOBP 11078 hgsc.bcm.edu hg19 22 38121789 38121789 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da TRIOBP_ENST00000344404,NS,carcinoma,0,3 TRIOBP NM_001039141 exon7 c.3225delG p.S1075fs . . 87.0 14.0 95.0 0.0 . 262 . . Atlas-INDEL SLC27A3 11000 hgsc.bcm.edu hg19 1 153747867 153747869 + In_Frame_Del DEL AGG AGG - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AGG AGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC27A3 NM_024330 exon1 c.34_36del p.12_12del . . 75.0 11.0 60.0 0.0 . 42 . . Atlas-INDEL ACADL 33 hgsc.bcm.edu hg19 2 211081128 211081129 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ACADL NM_001608 exon4 c.479_480insC p.Q160fs . . 93.0 12.0 95.0 0.0 . 38 . . Atlas-INDEL ARFGAP1 55738 hgsc.bcm.edu hg19 20 61917759 61917760 + Frame_Shift_Ins INS - - T novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,1 ARFGAP1 NM_175609 exon13 c.900_901insT p.T300fs . . 113.0 24.0 105.0 0.0 . 38 . . Atlas-INDEL NFASC 23114 hgsc.bcm.edu hg19 1 204924033 204924033 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NFASC NM_001005388 exon7 c.488delA p.N163fs . . 134.0 30.0 110.0 0.0 . 396 . . Atlas-INDEL RICTOR 253260 hgsc.bcm.edu hg19 5 38958624 38958624 + Splice_Site DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . RICTOR NM_152756 exon25 c.2344-2T>- . . . 340.0 102.0 317.0 0.0 . 182 . . Atlas-INDEL ZEB1 6935 hgsc.bcm.edu hg19 10 31809832 31809833 + Frame_Shift_Ins INS - - G novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ZEB1 NM_001174096 exon7 c.1572_1573insG p.E524fs . . 108.0 11.0 100.0 0.0 . 173 . . Atlas-INDEL SDC2 6383 hgsc.bcm.edu hg19 8 97621775 97621775 + Frame_Shift_Del DEL A A - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SDC2 NM_002998 exon5 c.604delT p.X202K . . 86.0 14.0 69.0 0.0 . 33 . . Atlas-INDEL ANKRD12 23253 hgsc.bcm.edu hg19 18 9255558 9255559 + Frame_Shift_Ins INS - - A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ANKRD12 NM_015208 exon9 c.2293_2294insA p.E765fs . . 123.0 49.0 103.0 0.0 . 167 . . Atlas-INDEL ELF3 1999 hgsc.bcm.edu hg19 1 201982384 201982385 + Frame_Shift_Del DEL AA AA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ELF3 NM_001114309 exon7 c.762_763del p.254_255del . . 302.0 30.0 231.0 0.0 . 92 . . Atlas-INDEL ZNF142 7701 hgsc.bcm.edu hg19 2 219508083 219508084 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da .,2 ZNF142 NM_001105537 exon8 c.3156_3157insG p.G1052fs . . 140.0 26.0 143.0 0.0 . 190 . . Atlas-INDEL GBP3 2635 hgsc.bcm.edu hg19 1 89476691 89476693 + In_Frame_Del DEL CTT CTT - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . GBP3 NM_018284 exon8 c.1257_1259del p.419_420del . . 145.0 69.0 89.0 0.0 . 53 . . Atlas-INDEL SPATC1 375686 hgsc.bcm.edu hg19 8 145095783 145095784 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da SPATC1_ENST00000377470,NS,carcinoma,0,2 SPATC1 NM_001134374 exon3 c.1081_1082insC p.A361fs . . 114.0 24.0 81.0 0.0 . 77 . . Atlas-INDEL SLC8A1 6546 hgsc.bcm.edu hg19 2 40656189 40656191 + In_Frame_Del DEL AAG AAG - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . SLC8A1 NM_001112802 exon2 c.1231_1233del p.411_411del . . 101.0 12.0 95.0 0.0 . 221 . . Atlas-INDEL HIVEP1 3096 hgsc.bcm.edu hg19 6 12124209 12124209 + Frame_Shift_Del DEL C C - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . HIVEP1 NM_002114 exon4 c.4180delA p.T1394fs . . 141.0 25.0 119.0 0.0 . 242 . . Atlas-INDEL DNAH6 1768 hgsc.bcm.edu hg19 2 84806683 84806684 + Frame_Shift_Ins INS - - A novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . DNAH6 NM_001370 exon14 c.2109_2110insA p.K703fs . . 82.0 20.0 75.0 0.0 . 194 . . Atlas-INDEL NHLRC2 374354 hgsc.bcm.edu hg19 10 115663496 115663499 + Frame_Shift_Del DEL GTAA GTAA - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 GTAA GTAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . NHLRC2 NM_198514 exon9 c.1704_1704del p.568_568del . . 288.0 34.0 334.0 0.0 . 56 . . Atlas-INDEL ULK1 8408 hgsc.bcm.edu hg19 12 132402065 132402066 + Frame_Shift_Ins INS - - C novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ULK1 NM_003565 exon22 c.2292_2293insC p.T764fs . . 222.0 40.0 215.0 0.0 . 92 . . Atlas-INDEL ANK3 288 hgsc.bcm.edu hg19 10 61828444 61828444 + Frame_Shift_Del DEL T T - novel TCGA-WQ-A9G7-01A-11D-A36X-10 TCGA-WQ-A9G7-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9b21e6c1-c220-41e9-b999-323e7bd7079a 60cdfad5-5cd4-4b7e-964b-b6e042e046da . ANK3 NM_020987 exon37 c.12196delT p.S4066fs . . 76.0 17.0 70.0 0.0 . 703 . . Atlas-INDEL