Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PSME4	23198	hgsc.bcm.edu	hg19	2	54135494	54135494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	PSME4	NM_014614	exon24	c.A2747C	p.K916T	AAGCTTTTCCATC	.	89.0	14.0	112.0	0.0	.	247	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613036	73613036	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	ALMS1	NM_015120	exon1	c.G40C	p.E14Q	CTGGAGGAGGAGG	.	175.0	9.0	172.0	0.0	.	384	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	ALMS1	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	179.0	13.0	169.0	0.0	.	384	.	.	Atlas-SNP
ICA1L	130026	hgsc.bcm.edu	hg19	2	203693673	203693673	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	ICA1L	NM_178231	exon4	c.A60G	p.Q20Q	TTTCTTTTGCATT	.	124.0	8.0	129.0	0.0	.	33	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53835443	53835443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	CACNA1D	NM_000720	exon43	c.G5459T	p.S1820I	GGTCCAGTGTGAA	.	54.0	9.0	52.0	0.0	.	324	.	.	Atlas-SNP
CHRD	8646	hgsc.bcm.edu	hg19	3	184103890	184103890	+	Silent	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	CHRD	NM_003741	exon15	c.C1875T	p.G625G	AAAAGGCATGGCC	.	216.0	9.0	257.0	0.0	.	149	.	.	Atlas-SNP
RXFP1	59350	hgsc.bcm.edu	hg19	4	159566234	159566234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	RXFP1	NM_001253727	exon15	c.G1370T	p.R457L	GCATGCGACCTTA	.	93.0	15.0	130.0	0.0	.	98	.	.	Atlas-SNP
DDX60L	91351	hgsc.bcm.edu	hg19	4	169336626	169336626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	DDX60L	NM_001012967	exon22	c.G2912T	p.C971F	ACTGAACATATAT	.	198.0	8.0	289.0	0.0	.	116	.	.	Atlas-SNP
SCRG1	11341	hgsc.bcm.edu	hg19	4	174312527	174312527	+	Silent	SNP	A	A	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	SCRG1	NM_007281	exon2	c.T39A	p.T13T	CAGCAAAGTTAGC	.	101.0	8.0	110.0	0.0	.	9	.	.	Atlas-SNP
MYO10	4651	hgsc.bcm.edu	hg19	5	16794770	16794770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	MYO10	NM_012334	exon4	c.A452G	p.Q151R	ATGCACTGGTTGT	.	76.0	14.0	74.0	0.0	.	198	.	.	Atlas-SNP
RHOBTB3	22836	hgsc.bcm.edu	hg19	5	95067705	95067705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	RHOBTB3	NM_014899	exon2	c.A145G	p.T49A	GCCAGCACGGTCG	.	178.0	8.0	194.0	0.0	.	43	.	.	Atlas-SNP
GABRG2	2566	hgsc.bcm.edu	hg19	5	161580308	161580308	+	Silent	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	GABRG2	NM_198903	exon11	c.G1482T	p.R494R	TGCTCGGATCTTC	.	127.0	7.0	118.0	0.0	.	142	.	.	Atlas-SNP
AGXT2L2	85007	hgsc.bcm.edu	hg19	5	177652372	177652372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	AGXT2L2	NM_153373	exon4	c.G397A	p.V133M	CCACCACGTCCTG	.	85.0	15.0	105.0	0.0	.	51	.	.	Atlas-SNP
TRIM26	7726	hgsc.bcm.edu	hg19	6	30166750	30166750	+	Missense_Mutation	SNP	C	C	T	rs371459188		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	TRIM26	NM_001242783	exon3	c.G131A	p.R44H	ATGGGGCGGACGT	.	73.0	11.0	83.0	0.0	.	74	.	.	Atlas-SNP
GNMT	27232	hgsc.bcm.edu	hg19	6	42931160	42931160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	GNMT	NM_018960	exon5	c.C689A	p.A230D	CGGGGGCTGGCCA	.	97.0	13.0	105.0	0.0	.	13	.	.	Atlas-SNP
PEX7	5191	hgsc.bcm.edu	hg19	6	137191048	137191048	+	Silent	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	PEX7	NM_000288	exon7	c.G654T	p.A218A	CGGGGCGGTTGAC	.	68.0	13.0	97.0	0.0	.	24	.	.	Atlas-SNP
TFB1M	51106	hgsc.bcm.edu	hg19	6	155618121	155618121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	TFB1M	NM_016020	exon4	c.A512G	p.Q171R	GTCATCTGAGTTC	.	72.0	9.0	63.0	0.0	.	30	.	.	Atlas-SNP
DTX2	113878	hgsc.bcm.edu	hg19	7	76132782	76132782	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	DTX2	NM_001102594	exon9	c.G1429T	p.G477X	ATCTATGGAGAGA	.	202.0	22.0	158.0	0.0	.	64	.	.	Atlas-SNP
BSPRY	54836	hgsc.bcm.edu	hg19	9	116122865	116122865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	BSPRY	NM_017688	exon3	c.C379T	p.R127W	GAGCAGCGGTTAC	.	66.0	7.0	91.0	0.0	.	21	.	.	Atlas-SNP
CTNNA3	29119	hgsc.bcm.edu	hg19	10	69281647	69281647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	CTNNA3	NM_013266	exon5	c.G532A	p.G178R	CCTTCCCAAGCTT	.	68.0	12.0	97.0	0.0	.	401	.	.	Atlas-SNP
PDZD7	79955	hgsc.bcm.edu	hg19	10	102770293	102770293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	PDZD7	NM_001195263	exon15	c.A2353C	p.S785R	CCCGGCTGCTGCG	.	329.0	17.0	378.0	0.0	.	101	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1104063	1104063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	NM_002457	exon50	c.G8242A	p.A2748T	GCCCAGGCCCTGG	.	99.0	21.0	122.0	0.0	.	614	.	.	Atlas-SNP
LUM	4060	hgsc.bcm.edu	hg19	12	91502234	91502234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	LUM	NM_002345	exon2	c.G523T	p.A175S	AAACAGCATCCTC	.	98.0	7.0	110.0	0.0	.	65	.	.	Atlas-SNP
CCDC168	643677	hgsc.bcm.edu	hg19	13	103384823	103384823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	.	NM_001146197	exon4	c.G18224A	p.R6075H	TCTTTACGTTTGG	.	79.0	16.0	81.0	0.0	.	.	.	.	Atlas-SNP
DAOA	267012	hgsc.bcm.edu	hg19	13	106142224	106142224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	DAOA	NM_001161812	exon4	c.C172T	p.P58S	ACCTGGCCAACTG	.	68.0	12.0	117.0	0.0	.	26	.	.	Atlas-SNP
NPAP1	23742	hgsc.bcm.edu	hg19	15	24923717	24923717	+	Silent	SNP	T	T	C	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	.	NM_018958	exon1	c.T2703C	p.L901L	CACACTTGGGGCC	.	51.0	9.0	59.0	0.0	.	.	.	.	Atlas-SNP
EPB42	2038	hgsc.bcm.edu	hg19	15	43507436	43507436	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	EPB42	NM_000119	exon3	c.A377T	p.E126V	TCTCTCTCCTCCA	.	100.0	6.0	98.0	0.0	.	53	.	.	Atlas-SNP
TRAF7	84231	hgsc.bcm.edu	hg19	16	2221291	2221291	+	Silent	SNP	C	C	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	TRAF7	NM_032271	exon6	c.C375G	p.P125P	GCAGCCCTCGGTG	.	32.0	6.0	45.0	0.0	.	158	.	.	Atlas-SNP
ERCC4	2072	hgsc.bcm.edu	hg19	16	14016042	14016042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	ERCC4	NM_005236	exon2	c.A362G	p.D121G	TGACTGATAGAAT	.	79.0	12.0	90.0	0.0	.	100	.	.	Atlas-SNP
EIF4A1	1973	hgsc.bcm.edu	hg19	17	7477593	7477593	+	Silent	SNP	C	C	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	EIF4A1	NM_001416	exon2	c.C39G	p.G13G	CAATGGCCCCGAT	.	72.0	11.0	106.0	0.0	.	38	.	.	Atlas-SNP
GAS2L2	246176	hgsc.bcm.edu	hg19	17	34073120	34073120	+	Nonsense_Mutation	SNP	C	C	A	rs139624793	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	GAS2L2	NM_139285	exon6	c.G1396T	p.E466X	GGCACTCGGCTGG	.	100.0	16.0	100.0	0.0	.	94	.	C|0.997;T|0.003	Atlas-SNP
PIP4K2B	8396	hgsc.bcm.edu	hg19	17	36935649	36935649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	PIP4K2B	NM_003559	exon5	c.A641C	p.K214T	TCATACTTGCGAT	.	74.0	13.0	98.0	0.0	.	35	.	.	Atlas-SNP
KAT2A	2648	hgsc.bcm.edu	hg19	17	40269500	40269500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	KAT2A	NM_021078	exon10	c.C1543T	p.R515W	ACACCCGCCGGTT	.	134.0	8.0	174.0	0.0	.	54	.	.	Atlas-SNP
KDM4B	23030	hgsc.bcm.edu	hg19	19	5047661	5047661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	KDM4B	NM_015015	exon6	c.T607G	p.F203V	CTGCACTTTGGGG	.	72.0	5.0	68.0	0.0	.	120	.	.	Atlas-SNP
LONP1	9361	hgsc.bcm.edu	hg19	19	5719823	5719823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	LONP1	NM_004793	exon1	c.T321A	p.F107L	TATGACCGGGCCT	.	90.0	11.0	116.0	0.0	.	66	.	.	Atlas-SNP
UPF1	5976	hgsc.bcm.edu	hg19	19	18965500	18965500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	UPF1	NM_002911	exon9	c.A1247G	p.K416R	TGTGGAAGTCGAC	.	92.0	10.0	90.0	0.0	.	88	.	.	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	hg19	19	53209500	53209500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	ZNF611,NS,carcinoma,0,1	ZNF611	NM_030972	exon7	c.C808T	p.H270Y	GCTCGTGATTAAA	.	134.0	19.0	133.0	0.0	.	72	.	.	Atlas-SNP
MXRA5	25878	hgsc.bcm.edu	hg19	X	3235500	3235500	+	Silent	SNP	C	C	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	MXRA5	NM_015419	exon6	c.G6222T	p.A2074A	CAGGGGCGCAGCC	.	97.0	8.0	152.0	0.0	.	815	.	.	Atlas-SNP
CDKL5	6792	hgsc.bcm.edu	hg19	X	18627641	18627641	+	Silent	SNP	A	A	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	CDKL5	NM_003159	exon14	c.A2103G	p.R701R	AAATAGACACCTA	.	180.0	9.0	212.0	0.0	.	124	.	.	Atlas-SNP
EDA2R	60401	hgsc.bcm.edu	hg19	X	65822603	65822603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	EDA2R	NM_001242310	exon4	c.C389A	p.P130H	ACTGTGGGTGTAT	.	301.0	50.0	353.0	0.0	.	30	.	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	hg19	X	100496711	100496711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	DRP2	NM_001939	exon7	c.C614G	p.A205G	AGCAGGCGACGGT	.	66.0	12.0	99.0	0.0	.	98	.	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	hg19	X	150889930	150889930	+	Nonsense_Mutation	SNP	G	G	T	rs150252397	bycluster;byfrequency;alternate_allele	TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	FATE1	NM_033085	exon3	c.G298T	p.E100X	CTCCAGGAGTACG	.	224.0	37.0	248.0	0.0	.	30	.	G|1.000;C|0.000	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	hg19	X	151817747	151817747	+	Silent	SNP	G	G	A	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	GABRQ	NM_018558	exon5	c.G561A	p.L187L	GGATCTGCATAAA	.	108.0	18.0	134.0	0.0	.	131	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1092613	1092618	+	In_Frame_Del	DEL	AGCCCT	AGCCCT	-	novel		TCGA-UB-AA0V-01A-11D-A382-10	TCGA-UB-AA0V-10A-01D-A385-10	AGCCCT	AGCCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	68f1e904-8781-4297-b29d-d1307a32cccd	57fd105f-1165-48c1-bbee-848f6cd31d51	.	MUC2	NM_002457	exon30	c.4431_4436del	p.1477_1479del	.	.	86.0	10.0	83.0	0.0	.	614	.	.	Atlas-INDEL