Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CD1A 909 hgsc.bcm.edu hg19 1 158225111 158225111 + Missense_Mutation SNP G G A rs139349958 TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . CD1A NM_001763 exon2 c.G296A p.R99H GAATTCGTAGATA . 131.0 35.0 98.0 0.0 . 88 . G|1.000;A|0.000 Atlas-SNP C1orf35 79169 hgsc.bcm.edu hg19 1 228289844 228289844 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . C1orf35 NM_024319 exon6 c.G470A p.G157E CCGGGCCCGCCGC . 72.0 14.0 50.0 0.0 . 17 . . Atlas-SNP NLRP3 114548 hgsc.bcm.edu hg19 1 247607349 247607349 + Silent SNP G G A rs201764635 alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . NLRP3 NM_004895 exon7 c.G2745A p.T915T TCTCACGCACCTT . 147.0 33.0 102.0 0.0 . 286 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926738 1926738 + Missense_Mutation SNP A A G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MYT1L NM_015025 exon10 c.T803C p.L268S TGGGCTAATAGTT . 124.0 25.0 124.0 0.0 . 241 . . Atlas-SNP ASXL2 55252 hgsc.bcm.edu hg19 2 25966699 25966699 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ASXL2 NM_018263 exon12 c.C2507T p.T836I GGACCTGTTGGAG . 83.0 37.0 88.0 0.0 . 217 . . Atlas-SNP FOSL2 2355 hgsc.bcm.edu hg19 2 28635208 28635208 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . FOSL2 NM_005253 exon4 c.T874C p.S292P CAGGAGTCACCCG . 42.0 12.0 50.0 0.0 . 39 . . Atlas-SNP IL1RL2 8808 hgsc.bcm.edu hg19 2 102808479 102808479 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . IL1RL2 NM_003854 exon4 c.G388A p.D130N TTATCAGATGAGT . 318.0 59.0 351.0 0.0 . 118 . . Atlas-SNP MAP3K2 10746 hgsc.bcm.edu hg19 2 128084382 128084382 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MAP3K2 NM_006609 exon7 c.A478G p.R160G TATCTCTACTAGT . 83.0 25.0 67.0 0.0 . 78 . . Atlas-SNP ZRANB3 84083 hgsc.bcm.edu hg19 2 136026637 136026637 + Silent SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ZRANB3 NM_032143 exon11 c.A1281G p.A427A GTCTTCTGCTTGT . 82.0 40.0 70.0 0.0 . 109 . . Atlas-SNP WDR12 55759 hgsc.bcm.edu hg19 2 203765765 203765765 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . WDR12 NM_018256 exon3 c.A214G p.M72V TCTCCATTTCCAT . 67.0 13.0 74.0 0.0 . 35 . . Atlas-SNP IDH1 3417 hgsc.bcm.edu hg19 2 209104688 209104688 + Missense_Mutation SNP C C G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . IDH1 NM_005896 exon8 c.G890C p.C297S TCTGGACAAACCA . 50.0 18.0 80.0 0.0 . 6310 . . Atlas-SNP ERBB4 2066 hgsc.bcm.edu hg19 2 212251640 212251640 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ERBB4 NM_005235 exon27 c.G3419T p.S1140I CGTGGGCTCCGTT . 121.0 24.0 136.0 0.0 . 480 . . Atlas-SNP XRCC5 7520 hgsc.bcm.edu hg19 2 216977745 216977745 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . XRCC5 NM_021141 exon2 c.G28A p.V10I GCAGCTGTTGTGC . 89.0 19.0 97.0 0.0 . 64 . . Atlas-SNP IGFBP5 3488 hgsc.bcm.edu hg19 2 217559447 217559447 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . IGFBP5 NM_000599 exon1 c.G52A p.A18T TCTGGGCCGGCCC . 83.0 27.0 93.0 0.0 . 13 . . Atlas-SNP SLC4A3 6508 hgsc.bcm.edu hg19 2 220502908 220502908 + Missense_Mutation SNP T T A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SLC4A3 NM_201574 exon18 c.T2870A p.F957Y GGGACTTTGGCAT . 36.0 7.0 68.0 0.0 . 144 . . Atlas-SNP ADCY5 111 hgsc.bcm.edu hg19 3 123166784 123166784 + Silent SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ADCY5 NM_183357 exon1 c.G609A p.L203L CAGGGACAGCACC . 43.0 13.0 43.0 0.0 . 169 . . Atlas-SNP TRIM42 287015 hgsc.bcm.edu hg19 3 140406640 140406640 + Silent SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TRIM42 NM_152616 exon3 c.G1116A p.K372K GGCAAAGCGAAAA . 137.0 47.0 200.0 0.0 . 143 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168840444 168840444 + Missense_Mutation SNP T T A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MECOM NM_004991 exon6 c.A902T p.N301I TTCCAGTTAAATG . 95.0 32.0 130.0 0.0 . 216 . . Atlas-SNP KIT 3815 hgsc.bcm.edu hg19 4 55595596 55595596 + Missense_Mutation SNP G G T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . KIT NM_000222 exon14 c.G2086T p.D696Y CAGGAAGATCATG . 66.0 16.0 74.0 0.0 . 7396 . . Atlas-SNP C4orf26 152816 hgsc.bcm.edu hg19 4 76489344 76489344 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . C4orf26 NM_001257072 exon2 c.C88A p.P30T TTTACGCCTCCTG . 79.0 12.0 87.0 0.0 . 24 . . Atlas-SNP THAP9 79725 hgsc.bcm.edu hg19 4 83827764 83827764 + Silent SNP A A T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . THAP9 NM_024672 exon3 c.A564T p.L188L TCTGCTACGAGCT . 236.0 52.0 191.0 0.0 . 65 . . Atlas-SNP DAB2 1601 hgsc.bcm.edu hg19 5 39383019 39383019 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . DAB2 NM_001343 exon10 c.G1042T p.D348Y TCTGGTCAAATTG . 41.0 9.0 53.0 0.0 . 124 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86629119 86629119 + Silent SNP A A G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . RASA1 NM_002890 exon4 c.A864G p.L288L TATTCTACCTTAC . 296.0 95.0 358.0 0.0 . 213 . . Atlas-SNP BRD8 10902 hgsc.bcm.edu hg19 5 137475827 137475827 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . BRD8 NM_139199 exon27 c.A3644G p.K1215R GAGCCTTTTCTTT . 105.0 13.0 110.0 0.0 . 192 . . Atlas-SNP OR5V1 81696 hgsc.bcm.edu hg19 6 29323776 29323776 + Missense_Mutation SNP A A C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . OR5V1 NM_030876 exon1 c.T197G p.L66W AAGGCCAAGTTCC . 150.0 34.0 107.0 0.0 . 63 . . Atlas-SNP TRERF1 55809 hgsc.bcm.edu hg19 6 42204142 42204142 + Missense_Mutation SNP T T A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TRERF1 NM_033502 exon16 c.A2867T p.E956V TCTTCTTCACTTG . 63.0 16.0 44.0 0.0 . 124 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90390402 90390402 + Silent SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MDN1 NM_014611 exon74 c.G12171A p.L4057L CTTTGGCAAGCGA . 55.0 23.0 76.0 0.0 . 478 . . Atlas-SNP REV3L 5980 hgsc.bcm.edu hg19 6 111694493 111694493 + Missense_Mutation SNP G G T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . REV3L NM_002912 exon13 c.C5065A p.Q1689K TAGCTTGTCCTGG . 77.0 38.0 90.0 0.0 . 386 . . Atlas-SNP DLL1 28514 hgsc.bcm.edu hg19 6 170592454 170592454 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . DLL1 NM_005618 exon9 c.C1913T p.A638V TCCACCGCTGGGT . 21.0 11.0 45.0 0.0 . 72 . . Atlas-SNP SPAM1 6677 hgsc.bcm.edu hg19 7 123599859 123599859 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SPAM1 NM_153189 exon5 c.G1366A p.D456N GCTGTTGATGTGT . 111.0 25.0 81.0 0.0 . 195 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128478085 128478085 + Silent SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . FLNC NM_001127487 exon6 c.C1014A p.V338V TGCTGTCTCCTAT . 82.0 22.0 71.0 0.0 . 339 . . Atlas-SNP CPQ 10404 hgsc.bcm.edu hg19 8 97978226 97978226 + Missense_Mutation SNP G G T rs373415893 alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_016134 exon5 c.G913T p.G305C GATGGCGGTGGAG . 117.0 6.0 80.0 0.0 . . . . Atlas-SNP NIPAL2 79815 hgsc.bcm.edu hg19 8 99264768 99264768 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . NIPAL2 NM_024759 exon3 c.G299A p.G100E GTCTCTCCCACGG . 187.0 29.0 153.0 0.0 . 23 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139890313 139890313 + Missense_Mutation SNP C C A rs375895986 alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . COL22A1 NM_152888 exon3 c.G338T p.G113V GTGTTGCCCCCGT . 110.0 25.0 78.0 0.0 . 390 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139890314 139890314 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . COL22A1 NM_152888 exon3 c.G337T p.G113C TGTTGCCCCCGTG . 110.0 25.0 79.0 0.0 . 390 . . Atlas-SNP GPAA1 8733 hgsc.bcm.edu hg19 8 145140996 145140996 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . GPAA1 NM_003801 exon12 c.C1834A p.L612M TGCTGGCTGCTTT . 36.0 5.0 41.0 0.0 . 40 . . Atlas-SNP ALDH1B1 219 hgsc.bcm.edu hg19 9 38396813 38396813 + Silent SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ALDH1B1 NM_000692 exon2 c.C1068T p.T356T GGACACCCAGCAG . 148.0 26.0 184.0 0.0 . 50 . . Atlas-SNP TNFSF15 9966 hgsc.bcm.edu hg19 9 117552930 117552930 + Missense_Mutation SNP G G C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TNFSF15 NM_005118 exon4 c.C558G p.D186E GTAGCTGTCTGTT . 120.0 33.0 160.0 0.0 . 23 . . Atlas-SNP SPTAN1 6709 hgsc.bcm.edu hg19 9 131353846 131353846 + Nonsense_Mutation SNP G G T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SPTAN1 NM_003127 exon22 c.G3097T p.E1033X TCCCGGGAGAATC . 81.0 13.0 108.0 0.0 . 266 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24508698 24508698 + Missense_Mutation SNP C C G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . KIAA1217 NM_019590 exon2 c.C214G p.P72A GGGGGGCCCCGAA . 153.0 38.0 186.0 0.0 . 235 . . Atlas-SNP ARMC4 55130 hgsc.bcm.edu hg19 10 28224053 28224053 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ARMC4 NM_018076 exon16 c.G2381T p.R794L CATTTCCGGACAA . 155.0 43.0 171.0 0.0 . 177 . . Atlas-SNP ARHGAP22 58504 hgsc.bcm.edu hg19 10 49654442 49654442 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 ARHGAP22,NS,carcinoma,0,1 ARHGAP22 NM_001256024 exon10 c.C2137T p.P713S ACTTTGGGGCCCT . 105.0 33.0 106.0 0.0 . 94 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770293 102770293 + Missense_Mutation SNP T T G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . PDZD7 NM_001195263 exon15 c.A2353C p.S785R CCCGGCTGCTGCG . 397.0 44.0 385.0 0.0 . 101 . . Atlas-SNP NLRP6 171389 hgsc.bcm.edu hg19 11 280376 280376 + Silent SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . NLRP6 NM_138329 exon4 c.G642A p.K214K CAAAAAGATCCTG . 34.0 13.0 31.0 0.0 . 4 . . Atlas-SNP KRTAP5-5 439915 hgsc.bcm.edu hg19 11 1651253 1651253 + Silent SNP C C G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . KRTAP5-5 NM_001001480 exon1 c.C183G p.G61G CTCCGGCTGCTGT . 161.0 23.0 144.0 0.0 . 86 . . Atlas-SNP RRM1 6240 hgsc.bcm.edu hg19 11 4127292 4127292 + Missense_Mutation SNP A A G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . RRM1 NM_001033 exon3 c.A125G p.K42R CCATGAAAGTAAT . 104.0 19.0 82.0 0.0 . 31 . . Atlas-SNP CHRM4 1132 hgsc.bcm.edu hg19 11 46407264 46407264 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . CHRM4 NM_000741 exon1 c.C844T p.P282S GTGGCGGTGGCAG . 41.0 15.0 59.0 0.0 . 47 . . Atlas-SNP CATSPER1 117144 hgsc.bcm.edu hg19 11 65787820 65787820 + Silent SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . CATSPER1 NM_053054 exon8 c.C2032T p.L678L TGAACAGCGCCGT . 71.0 15.0 77.0 0.0 . 101 . . Atlas-SNP RNF121 55298 hgsc.bcm.edu hg19 11 71640151 71640151 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . RNF121 NM_018320 exon1 c.G44A p.G15E CTGCTGGGGAACG . 99.0 13.0 80.0 0.0 . 19 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105795410 105795410 + Nonsense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . GRIA4 NM_001077243 exon12 c.C1762T p.Q588X AGCGACCAGCCTC . 174.0 30.0 215.0 0.0 . 380 . . Atlas-SNP ALG9 79796 hgsc.bcm.edu hg19 11 111706981 111706981 + Silent SNP A A T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ALG9 NM_024740 exon14 c.T1509A p.G503G TAACTGACCTCTG . 62.0 21.0 101.0 0.0 . 77 . . Atlas-SNP USP5 8078 hgsc.bcm.edu hg19 12 6972521 6972521 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . USP5 NM_001098536 exon15 c.C1934T p.P645L GCTCCCCTCACTT . 77.0 40.0 111.0 0.0 . 124 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46246680 46246680 + Splice_Site SNP G G T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ARID2 NM_152641 exon15 c.4773+1G>T . CCGCAGGTAAGTT . 37.0 18.0 53.0 0.0 . 311 . . Atlas-SNP LMBR1L 55716 hgsc.bcm.edu hg19 12 49498238 49498238 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 LMBR1L_ENST00000267102,bladder,carcinoma,0,2 LMBR1L NM_018113 exon5 c.C428T p.S143F TTTCTGGAGCCAG . 103.0 18.0 118.0 0.0 . 61 . . Atlas-SNP LGR5 8549 hgsc.bcm.edu hg19 12 71977548 71977548 + Silent SNP T T G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . LGR5 NM_003667 exon18 c.T1758G p.P586P ATCCCCTCTGTAC . 122.0 41.0 144.0 0.0 . 103 . . Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112673514 112673514 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_001109662 exon36 c.G5117A p.R1706H GACGGGCGTTGGT . 94.0 12.0 99.0 0.0 . . . . Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39587872 39587872 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_025138 exon11 c.A1517G p.Q506R GAGTTCTGAAGAG . 61.0 16.0 111.0 0.0 . . . . Atlas-SNP DCT 1638 hgsc.bcm.edu hg19 13 95112447 95112447 + Silent SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . DCT NM_001129889 exon6 c.G1077A p.G359G CAGAGTCCCATCT . 272.0 41.0 228.0 0.0 . 186 . . Atlas-SNP MCF2L 23263 hgsc.bcm.edu hg19 13 113741578 113741578 + Silent SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MCF2L NM_001112732 exon22 c.G2403A p.L801L GCTGCTGATGCAG . 113.0 13.0 124.0 0.0 . 182 . . Atlas-SNP TECPR2 9895 hgsc.bcm.edu hg19 14 102881064 102881064 + Missense_Mutation SNP A A G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TECPR2 NM_001172631 exon5 c.A572G p.Q191R CTCTGCAAAGAAG . 116.0 38.0 105.0 0.0 . 114 . . Atlas-SNP TMEM62 80021 hgsc.bcm.edu hg19 15 43473452 43473452 + Silent SNP A A G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TMEM62 NM_024956 exon13 c.A1560G p.G520G TAATGGACATTTC . 59.0 7.0 72.0 0.0 . 47 . . Atlas-SNP MNS1 55329 hgsc.bcm.edu hg19 15 56736725 56736725 + Silent SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MNS1 NM_018365 exon5 c.A603G p.K201K CTGCTTTTTTTTT . 46.0 6.0 52.0 0.0 . 39 . . Atlas-SNP DPP8 54878 hgsc.bcm.edu hg19 15 65799617 65799617 + Silent SNP T T C rs377607090 alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . DPP8 NM_197960 exon4 c.A384G p.L128L GAGCATTAAGACT . 89.0 12.0 76.0 0.0 . 78 . . Atlas-SNP SMG1 23049 hgsc.bcm.edu hg19 16 18937327 18937327 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SMG1 NM_015092 exon1 c.G37A p.G13S CGCCGCCGCTGCT . 86.0 5.0 88.0 0.0 . 401 . . Atlas-SNP TRIM72 493829 hgsc.bcm.edu hg19 16 31226434 31226434 + Silent SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TRIM72 NM_001008274 exon2 c.C375T p.A125A CGAGGCCCACGCA . 25.0 8.0 20.0 0.0 . 32 . . Atlas-SNP GSE1 23199 hgsc.bcm.edu hg19 16 85690011 85690011 + Missense_Mutation SNP G G A rs374600357 TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_014615 exon7 c.G1052A p.R351H GTGAGCGTGAGGC . 143.0 27.0 196.0 0.0 . . . . Atlas-SNP SCARF1 8578 hgsc.bcm.edu hg19 17 1543920 1543920 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SCARF1 NM_145350 exon5 c.A832G p.T278A TGCCTGTGTCTGG . 131.0 57.0 204.0 0.0 . 46 . . Atlas-SNP KRTAP4-1 85285 hgsc.bcm.edu hg19 17 39340971 39340971 + Missense_Mutation SNP G G T rs375189286 alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . KRTAP4-1 NM_033060 exon1 c.C136A p.R46S ATGGGCGGCAGCA . 124.0 38.0 114.0 0.0 . 58 . . Atlas-SNP ACLY 47 hgsc.bcm.edu hg19 17 40030078 40030078 + Silent SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ACLY NM_001096 exon23 c.C2628T p.L876L GAACCAGAGGAGG . 51.0 9.0 44.0 0.0 . 85 . . Atlas-SNP KAT7 11143 hgsc.bcm.edu hg19 17 47875714 47875714 + Missense_Mutation SNP C C T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_007067 exon4 c.C374T p.P125L AGTCACCGCCTCG . 111.0 5.0 80.0 0.0 . . . . Atlas-SNP C17orf64 124773 hgsc.bcm.edu hg19 17 58506757 58506757 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 C17orf64,NS,carcinoma,0,1 C17orf64 NM_181707 exon5 c.C464A p.S155Y AGAGGTCCTTGCT . 171.0 53.0 139.0 1.0 . 19 . . Atlas-SNP GAA 2548 hgsc.bcm.edu hg19 17 78092487 78092487 + Silent SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . GAA NM_001079803 exon20 c.T2682C p.S894S GACCAGTGAGGGA . 56.0 11.0 60.0 0.0 . 66 . . Atlas-SNP FBXO15 201456 hgsc.bcm.edu hg19 18 71791775 71791775 + Missense_Mutation SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . FBXO15 NM_001142958 exon7 c.A944G p.N315S TGAAGATTTGCCA . 116.0 48.0 157.0 0.0 . 97 . . Atlas-SNP RDH8 50700 hgsc.bcm.edu hg19 19 10129559 10129559 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . RDH8 NM_015725 exon3 c.G475A p.V159M ATCGTGGTGATCA . 88.0 34.0 93.0 0.0 . 51 . . Atlas-SNP SMARCA4 6597 hgsc.bcm.edu hg19 19 11138584 11138584 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SMARCA4 NM_003072 exon24 c.G3340A p.D1114N ATGGAAGATTACT . 131.0 24.0 115.0 0.0 . 502 . . Atlas-SNP ZNF701 55762 hgsc.bcm.edu hg19 19 53086589 53086589 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ZNF701 NM_001172655 exon5 c.C1475A p.A492E ACCTTGCATGTCA . 188.0 8.0 245.0 0.0 . 44 . . Atlas-SNP ZNF701 55762 hgsc.bcm.edu hg19 19 53086622 53086622 + Missense_Mutation SNP C C G rs142390931 byfrequency;alternate_allele TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ZNF701 NM_001172655 exon5 c.C1508G p.P503R AGAAACCTTACAA . 227.0 11.0 274.0 0.0 . 44 . C|1.000;T|0.000 Atlas-SNP ZNF701 55762 hgsc.bcm.edu hg19 19 53086658 53086658 + Missense_Mutation SNP G G A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 ZNF701,NS,carcinoma,0,1 ZNF701 NM_001172655 exon5 c.G1544A p.R515Q TTAATCGAAAATC . 242.0 28.0 315.0 0.0 . 44 . . Atlas-SNP ZNF701 55762 hgsc.bcm.edu hg19 19 53086659 53086659 + Silent SNP A A C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . ZNF701 NM_001172655 exon5 c.A1545C p.R515R TAATCGAAAATCA . 242.0 28.0 314.0 0.0 . 44 . . Atlas-SNP HSPBP1 23640 hgsc.bcm.edu hg19 19 55790902 55790902 + Silent SNP C C G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . HSPBP1 NM_012267 exon2 c.G75C p.G25G GCCGCCCCCTGAA . 75.0 5.0 64.0 0.0 . 24 . . Atlas-SNP MATN4 8785 hgsc.bcm.edu hg19 20 43934157 43934157 + Missense_Mutation SNP C C G novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MATN4 NM_030592 exon2 c.G66C p.Q22H TGTCAACTGGAGC . 48.0 16.0 35.0 0.0 . 57 . . Atlas-SNP DSCAM 1826 hgsc.bcm.edu hg19 21 41725589 41725589 + Missense_Mutation SNP C C A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . DSCAM NM_001271534 exon5 c.G737T p.C246F GCTTTGCAAGGCA . 52.0 9.0 51.0 0.0 . 347 . . Atlas-SNP GNAZ 2781 hgsc.bcm.edu hg19 22 23438485 23438485 + Silent SNP C C T rs375941406 TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 GNAZ,NS,carcinoma,0,1 GNAZ NM_002073 exon2 c.C603T p.D201D GGTGGACGTGGGG . 36.0 14.0 44.0 0.0 . 45 . . Atlas-SNP GATSL3 652968 hgsc.bcm.edu hg19 22 30683518 30683518 + Silent SNP A A C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . GATSL3 NM_001037666 exon3 c.T216G p.A72A GGCCTCAGCTACT . 42.0 17.0 49.0 0.0 . 14 . . Atlas-SNP SHROOM4 57477 hgsc.bcm.edu hg19 X 50350752 50350752 + Silent SNP T T C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . SHROOM4 NM_020717 exon6 c.A3390G p.Q1130Q CTCCTGTTGCTTC . 24.0 5.0 39.0 0.0 . 171 . . Atlas-SNP MAGEC3 139081 hgsc.bcm.edu hg19 X 140969562 140969562 + Nonsense_Mutation SNP G G T novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MAGEC3 NM_138702 exon4 c.G889T p.E297X ATCTGGGAAGTGC . 58.0 27.0 66.0 0.0 . 228 . . Atlas-SNP RBL2 5934 hgsc.bcm.edu hg19 16 53499478 53499479 + Frame_Shift_Ins INS - - A novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . RBL2 NM_005611 exon13 c.1827_1828insA p.I609fs . . 178.0 96.0 189.0 0.0 . 115 . . Atlas-INDEL MYRF 745 hgsc.bcm.edu hg19 11 61533636 61533637 + Frame_Shift_Ins INS - - C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . . NM_001127392 exon3 c.341_342insC p.F114fs . . 66.0 10.0 75.0 0.0 . . . . Atlas-INDEL DNM2 1785 hgsc.bcm.edu hg19 19 10940881 10940882 + Frame_Shift_Ins INS - - C novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 .,4 DNM2 NM_001005361 exon20 c.2370_2371insC p.G790fs . . 80.0 25.0 92.0 0.0 . 175 . . Atlas-INDEL MBL2 4153 hgsc.bcm.edu hg19 10 54528080 54528115 + In_Frame_Del DEL ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG - novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG ATCAGTGATGCCCAGGAAGGCTTCCTCCTTGATGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . MBL2 NM_000242 exon4 c.530_565del p.177_189del . . 114.0 10.0 104.0 0.0 . 55 . . Atlas-INDEL USP6NL 9712 hgsc.bcm.edu hg19 10 11505654 11505655 + In_Frame_Ins INS - - CGT novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . USP6NL NM_001080491 exon14 c.1324_1325insACG p.P442delinsTP . . 83.0 19.0 106.0 0.0 . 57 . . Atlas-INDEL TDRD1 56165 hgsc.bcm.edu hg19 10 115977409 115977419 + Frame_Shift_Del DEL TTGCAGGTAAG TTGCAGGTAAG - novel TCGA-UB-AA0U-01A-11D-A382-10 TCGA-UB-AA0U-10A-01D-A385-10 TTGCAGGTAAG TTGCAGGTAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 86952660-bb3d-44f2-b8c2-842213a5fb20 d47d2cb3-bc69-4675-826a-152e65b30482 . TDRD1 NM_198795 exon17 c.2317_2323del p.773_775del . . 184.0 18.0 184.0 0.0 . 126 . . Atlas-INDEL