Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm ANXA9 8416 hgsc.bcm.edu hg19 1 150960818 150960818 + Splice_Site SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ANXA9 NM_003568 exon12 c.852+1G>A . CTCCAGGTGAGAG . 119.0 43.0 80.0 0.0 . 28 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154842252 154842252 + Silent SNP A A C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . KCNN3 NM_001204087 exon1 c.T189G p.P63P CTGCGGAGGCTGA . 93.0 9.0 65.0 0.0 . 141 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154842253 154842253 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . KCNN3 NM_001204087 exon1 c.C188A p.P63H TGCGGAGGCTGAG . 93.0 10.0 66.0 0.0 . 141 . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175335172 175335172 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TNR NM_003285 exon11 c.C2156G p.T719S GTAAAGGTAATTC . 172.0 91.0 131.0 0.0 . 399 . . Atlas-SNP FAM5B 57795 hgsc.bcm.edu hg19 1 177226365 177226365 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . FAM5B NM_021165 exon4 c.G514A p.E172K AAGACAGAGACAA . 282.0 80.0 251.0 0.0 . 191 . . Atlas-SNP INTS7 25896 hgsc.bcm.edu hg19 1 212190324 212190324 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . INTS7 NM_015434 exon4 c.A413G p.N138S TGAGCATTCTTCC . 223.0 76.0 183.0 0.0 . 68 . . Atlas-SNP DISC1 27185 hgsc.bcm.edu hg19 1 231931028 231931028 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 DISC1_ENST00000366638,caecum,carcinoma,0,6 DISC1 NM_001164537 exon8 c.G1771T p.E591X CTTAAAGAAATCA . 85.0 5.0 71.0 0.0 . 207 . . Atlas-SNP OR2L3 391192 hgsc.bcm.edu hg19 1 248224001 248224001 + Missense_Mutation SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . OR2L3 NM_001004687 exon1 c.A18T p.Q6H CAATCAAACATCA . 180.0 80.0 160.0 0.0 . 97 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1926072 1926072 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 .,1 MYT1L NM_015025 exon10 c.C1469A p.P490Q TAGTATGGCTTTT . 122.0 26.0 100.0 0.0 . 241 . . Atlas-SNP NR4A2 4929 hgsc.bcm.edu hg19 2 157186301 157186301 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NR4A2 NM_006186 exon3 c.C398T p.P133L AAGCCCGGGGTGG . 66.0 9.0 70.0 0.0 . 82 . . Atlas-SNP STAT1 6772 hgsc.bcm.edu hg19 2 191841668 191841668 + Missense_Mutation SNP C C G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . STAT1 NM_007315 exon22 c.G1957C p.V653L CCATGACTTTGTA . 106.0 59.0 131.0 0.0 . 93 . . Atlas-SNP C2orf62 375307 hgsc.bcm.edu hg19 2 219225307 219225307 + Silent SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . C2orf62 NM_198559 exon5 c.C387T p.L129L CATCCTCCCCATG . 39.0 10.0 41.0 0.0 . 28 . . Atlas-SNP NDUFA10 4705 hgsc.bcm.edu hg19 2 240946749 240946749 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NDUFA10 NM_004544 exon7 c.C788A p.A263D TCTTGAGCTTCCC . 61.0 6.0 76.0 0.0 . 40 . . Atlas-SNP NKTR 4820 hgsc.bcm.edu hg19 3 42672063 42672063 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NKTR NM_005385 exon7 c.G400C p.D134H CACCTGGATGGGT . 89.0 12.0 141.0 0.0 . 116 . . Atlas-SNP APEH 327 hgsc.bcm.edu hg19 3 49720485 49720485 + Silent SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . APEH NM_001640 exon21 c.C1999T p.L667L ACACCACTGTTAC . 58.0 26.0 96.0 0.0 . 45 . . Atlas-SNP P2RY1 5028 hgsc.bcm.edu hg19 3 152554423 152554423 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . P2RY1 NM_002563 exon1 c.G852C p.L284F GAACTTGAGGGCC . 88.0 42.0 117.0 0.0 . 49 . . Atlas-SNP UGT2B4 7363 hgsc.bcm.edu hg19 4 70359471 70359471 + Silent SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . UGT2B4 NM_021139 exon2 c.C810G p.L270L TGGTAAGAGTGGG . 111.0 60.0 87.0 0.0 . 105 . . Atlas-SNP SYNPO2 171024 hgsc.bcm.edu hg19 4 119951206 119951206 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SYNPO2 NM_001128934 exon4 c.G1276C p.E426Q GAGGAAGAAGGTG . 125.0 93.0 138.0 0.0 . 353 . . Atlas-SNP UCP1 7350 hgsc.bcm.edu hg19 4 141489132 141489132 + Splice_Site SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . UCP1 NM_021833 exon3 c.127-1G>A . TTGGACCTGGAAA . 43.0 32.0 50.0 0.0 . 33 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13788992 13788992 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . DNAH5 NM_001369 exon51 c.A8480G p.K2827R ACACGTTTACACT . 183.0 116.0 141.0 0.0 . 868 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60831392 60831392 + Missense_Mutation SNP C C G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ZSWIM6 NM_020928 exon10 c.C2327G p.S776C TCACCTCTCTCCT . 85.0 34.0 90.0 0.0 . 51 . . Atlas-SNP TSLP 85480 hgsc.bcm.edu hg19 5 110409224 110409224 + Nonsense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TSLP NM_033035 exon3 c.G232T p.E78X CTTACTGAAATCC . 251.0 42.0 311.0 0.0 . 22 . . Atlas-SNP FBN2 2201 hgsc.bcm.edu hg19 5 127680141 127680141 + Silent SNP G G T rs142809999 bycluster;by1000genomes;alternate_allele TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . FBN2 NM_001999 exon25 c.C3279A p.I1093I GCTTCCGATTGTA . 74.0 17.0 122.0 0.0 . 858 . G|1.000;A|0.000 Atlas-SNP RIPK1 8737 hgsc.bcm.edu hg19 6 3106166 3106166 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . RIPK1 NM_003804 exon8 c.C1457T p.P486L CAGGTCCCAGAGT . 254.0 109.0 204.0 0.0 . 56 . . Atlas-SNP LGSN 51557 hgsc.bcm.edu hg19 6 64004842 64004842 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . LGSN NM_016571 exon2 c.G139A p.E47K CCGTTTCTCCCAC . 129.0 49.0 128.0 0.0 . 82 . . Atlas-SNP MYO6 4646 hgsc.bcm.edu hg19 6 76527267 76527267 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MYO6 NM_004999 exon2 c.G3A p.M1I AAAAATGGAGGAT . 97.0 47.0 94.0 0.0 . 124 . . Atlas-SNP GPR63 81491 hgsc.bcm.edu hg19 6 97246394 97246394 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GPR63 NM_030784 exon2 c.G1214A p.R405H CTAGGACGTATCC . 163.0 69.0 159.0 0.0 . 60 . . Atlas-SNP GRIK2 2898 hgsc.bcm.edu hg19 6 102134211 102134211 + Missense_Mutation SNP C C A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GRIK2 NM_021956 exon6 c.C934A p.L312M GGTTTGCTGGATG . 117.0 15.0 124.0 0.0 . 487 . . Atlas-SNP ARID1B 57492 hgsc.bcm.edu hg19 6 157522371 157522371 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ARID1B NM_020732 exon18 c.A4643G p.N1548S TGCCAAATCACAT . 50.0 20.0 45.0 0.0 . 320 . . Atlas-SNP GPC2 221914 hgsc.bcm.edu hg19 7 99769820 99769820 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GPC2 NM_152742 exon6 c.G913A p.D305N GCTTATCAGCCAG . 51.0 5.0 50.0 0.0 . 49 . . Atlas-SNP ATP6V0A4 50617 hgsc.bcm.edu hg19 7 138394421 138394421 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ATP6V0A4 NM_130841 exon20 c.C2377G p.L793V TCAGAAGGATGGC . 155.0 72.0 209.0 0.0 . 93 . . Atlas-SNP OR9A2 135924 hgsc.bcm.edu hg19 7 142723964 142723964 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . OR9A2 NM_001001658 exon1 c.T256C p.F86L CCAGGAAGAGCAA . 101.0 24.0 160.0 0.0 . 52 . . Atlas-SNP XPO7 23039 hgsc.bcm.edu hg19 8 21827677 21827677 + Silent SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . XPO7 NM_015024 exon4 c.T282C p.L94L CTACCTTGCCACT . 52.0 12.0 86.0 0.0 . 79 . . Atlas-SNP KCNU1 157855 hgsc.bcm.edu hg19 8 36675256 36675256 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . KCNU1 NM_001031836 exon10 c.A1084G p.T362A ATCAACACTGAAA . 59.0 25.0 115.0 0.0 . 359 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75929298 75929298 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 CRISPLD1,NS,carcinoma,0,1 CRISPLD1 NM_031461 exon9 c.G946T p.G316C CCTGCTGGCTGTT . 158.0 23.0 214.0 0.0 . 94 . . Atlas-SNP RUNX1T1 862 hgsc.bcm.edu hg19 8 93023242 93023242 + Silent SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . RUNX1T1 NM_001198679 exon5 c.C723A p.I241I AAATGGGATGACA . 76.0 35.0 102.0 0.0 . 516 . . Atlas-SNP TRAPPC9 83696 hgsc.bcm.edu hg19 8 141294100 141294100 + Missense_Mutation SNP C C T rs147687394 TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TRAPPC9 NM_031466 exon14 c.G2296A p.G766S ACACACCGAAGAC . 73.0 10.0 102.0 0.0 . 114 . C|1.000;T|0.000 Atlas-SNP TOPORS 10210 hgsc.bcm.edu hg19 9 32550784 32550784 + Silent SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TOPORS NM_005802 exon2 c.G186A p.P62P GGATGCCGGCGCA . 245.0 95.0 195.0 0.0 . 127 . . Atlas-SNP FAM69B 138311 hgsc.bcm.edu hg19 9 139617859 139617859 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . FAM69B NM_152421 exon5 c.A929G p.D310G CCTACGACTTCAA . 91.0 22.0 131.0 0.0 . 22 . . Atlas-SNP RASSF4 83937 hgsc.bcm.edu hg19 10 45478109 45478109 + Silent SNP T T A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . RASSF4 NM_032023 exon4 c.T279A p.P93P CTGCCCTCTGTGA . 81.0 31.0 99.0 0.0 . 33 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61833020 61833020 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ANK3 NM_020987 exon37 c.C7619T p.T2540I AACACTGTCACTT . 111.0 46.0 127.0 0.0 . 703 . . Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70450720 70450720 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 TET1_ENST00000373644,NS,carcinoma,0,1 TET1 NM_030625 exon12 c.A5560G p.T1854A CCGAAGACTGCTT . 82.0 31.0 88.0 1.0 . 255 . . Atlas-SNP TCERG1L 256536 hgsc.bcm.edu hg19 10 133058601 133058601 + Silent SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 TCERG1L,caecum,carcinoma,0,1 TCERG1L NM_174937 exon4 c.G777A p.P259P GGGGGACGGGCCC . 37.0 13.0 29.0 0.0 . 91 . . Atlas-SNP KNDC1 85442 hgsc.bcm.edu hg19 10 134999499 134999499 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . KNDC1 NM_152643 exon6 c.G647A p.R216Q GCTGGCGGGAGAG . 67.0 15.0 37.0 0.0 . 155 . . Atlas-SNP VENTX 27287 hgsc.bcm.edu hg19 10 135053718 135053718 + Missense_Mutation SNP C C G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . VENTX NM_014468 exon3 c.C685G p.P229A TCCCACCCCCCTA . 40.0 18.0 37.0 0.0 . 24 . . Atlas-SNP PIK3C2A 5286 hgsc.bcm.edu hg19 11 17153463 17153463 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PIK3C2A NM_002645 exon11 c.T2231C p.L744P ACTTACAGTTCAT . 215.0 41.0 174.0 0.0 . 148 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20057523 20057523 + Silent SNP C C A rs199691877 by1000genomes;alternate_allele TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NAV2 NM_001244963 exon13 c.C2856A p.S952S CAGCTCCGTCAGC . 97.0 36.0 113.0 0.0 . 255 . C|1.000;T|0.000 Atlas-SNP PIWIL4 143689 hgsc.bcm.edu hg19 11 94354053 94354053 + Missense_Mutation SNP T T G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PIWIL4 NM_152431 exon20 c.T2454G p.S818R AGTCAGTGTCCCA . 76.0 17.0 90.0 0.0 . 70 . . Atlas-SNP GRIA4 2893 hgsc.bcm.edu hg19 11 105795190 105795190 + Silent SNP T T A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GRIA4 NM_001077243 exon12 c.T1542A p.S514S CTTTTCTAAGCCC . 100.0 20.0 104.0 0.0 . 380 . . Atlas-SNP PCSK7 9159 hgsc.bcm.edu hg19 11 117096683 117096683 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PCSK7 NM_004716 exon6 c.A824G p.N275S TGCTTGTTGAACG . 42.0 22.0 54.0 0.0 . 59 . . Atlas-SNP CBL 867 hgsc.bcm.edu hg19 11 119103248 119103248 + Missense_Mutation SNP C C T rs147438359 TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CBL NM_005188 exon2 c.C286T p.R96C CATCTCCGTACTA . 63.0 19.0 81.0 0.0 . 408 . C|1.000;T|0.000 Atlas-SNP OR8G2 26492 hgsc.bcm.edu hg19 11 124095563 124095563 + Missense_Mutation SNP T T G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . . NM_001007249 exon1 c.T166G p.L56V GGCAACTTGAGCA . 85.0 15.0 96.0 0.0 . . . . Atlas-SNP CLEC6A 93978 hgsc.bcm.edu hg19 12 8612254 8612254 + Silent SNP T T C rs142509792 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CLEC6A NM_001007033 exon3 c.T183C p.H61H ATATCATTCAAGT . 101.0 37.0 81.0 0.0 . 19 . T|0.999;A|0.001 Atlas-SNP CLEC4D 338339 hgsc.bcm.edu hg19 12 8672896 8672896 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CLEC4D NM_080387 exon5 c.G459T p.Q153H AGGTCAGTGGCGT . 102.0 14.0 111.0 0.0 . 46 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43846137 43846137 + Silent SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ADAMTS20 NM_025003 exon14 c.T2019A p.V673V ATCTTCAACCATA . 75.0 14.0 85.0 0.0 . 635 . . Atlas-SNP HOXC11 3227 hgsc.bcm.edu hg19 12 54367576 54367576 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . HOXC11 NM_014212 exon1 c.C551T p.P184L AGGCACCCCCGGC . 74.0 13.0 70.0 0.0 . 32 . . Atlas-SNP SLC6A15 55117 hgsc.bcm.edu hg19 12 85279232 85279232 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SLC6A15 NM_018057 exon4 c.A556G p.K186E CATTTTTCACCAA . 214.0 86.0 234.0 0.0 . 159 . . Atlas-SNP TBX3 6926 hgsc.bcm.edu hg19 12 115109981 115109981 + Missense_Mutation SNP T T A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TBX3 NM_016569 exon8 c.A1897T p.T633S GCATGGTGTTCAG . 46.0 26.0 49.0 0.0 . 106 . . Atlas-SNP EFHA1 221154 hgsc.bcm.edu hg19 13 22077105 22077105 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . EFHA1 NM_152726 exon9 c.T893C p.I298T CAATAAATATCTT . 62.0 40.0 84.0 0.0 . 33 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36202217 36202217 + Splice_Site SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NBEA NM_015678 exon49 c.7450-1G>T . ATTTCAGGCCCTA . 57.0 18.0 113.0 0.0 . 340 . . Atlas-SNP GPC6 10082 hgsc.bcm.edu hg19 13 94680117 94680117 + Silent SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GPC6 NM_005708 exon4 c.T846C p.A282A TCAGGCTGACCTC . 178.0 12.0 85.0 0.0 . 102 . . Atlas-SNP TPP2 7174 hgsc.bcm.edu hg19 13 103328668 103328668 + Missense_Mutation SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TPP2 NM_003291 exon28 c.A3563T p.H1188L ATAAACATGCATT . 673.0 451.0 312.0 0.0 . 124 . . Atlas-SNP MCF2L 23263 hgsc.bcm.edu hg19 13 113750685 113750685 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MCF2L NM_001112732 exon28 c.G3076A p.V1026I CACCAGGTTCCAG . 190.0 18.0 107.0 0.0 . 182 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23894029 23894029 + Missense_Mutation SNP C C G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MYH7 NM_000257 exon22 c.G2628C p.K876N CACCATCTTCTCC . 79.0 19.0 73.0 0.0 . 349 . . Atlas-SNP SH3GL3 6457 hgsc.bcm.edu hg19 15 84241337 84241337 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SH3GL3 NM_003027 exon5 c.G352C p.G118R GAAGTTGGTGAAT . 77.0 24.0 74.0 0.0 . 91 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1260417 1260417 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CACNA1H NM_021098 exon19 c.A3893G p.H1298R TTGATCACGTGGT . 54.0 23.0 90.0 0.0 . 317 . . Atlas-SNP MLST8 64223 hgsc.bcm.edu hg19 16 2257035 2257035 + Splice_Site SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MLST8 NM_022372 exon5 c.345-1G>C . CCCGCAGGTCCCG . 152.0 34.0 189.0 0.0 . 60 . . Atlas-SNP CES3 23491 hgsc.bcm.edu hg19 16 67006828 67006828 + Missense_Mutation SNP C C A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CES3 NM_024922 exon13 c.C1592A p.P531Q TCAACCCAGTGCC . 83.0 38.0 109.0 0.0 . 56 . . Atlas-SNP ATP6V0D1 9114 hgsc.bcm.edu hg19 16 67472440 67472440 + Silent SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ATP6V0D1 NM_004691 exon8 c.T1047A p.P349P GAAGATAGGGATG . 98.0 26.0 132.0 0.0 . 25 . . Atlas-SNP DPEP2 64174 hgsc.bcm.edu hg19 16 68026979 68026979 + Missense_Mutation SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . DPEP2 NM_022355 exon2 c.T137A p.L46Q GCGCCCAGCGTGG . 59.0 22.0 65.0 0.0 . 43 . . Atlas-SNP VAC14 55697 hgsc.bcm.edu hg19 16 70820268 70820268 + Missense_Mutation SNP C C A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . VAC14 NM_018052 exon2 c.G105T p.K35N GACCAGCCTGGAG . 58.0 31.0 66.0 0.0 . 65 . . Atlas-SNP PLCG2 5336 hgsc.bcm.edu hg19 16 81922840 81922840 + Missense_Mutation SNP A A T rs372494175 alternate_allele TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PLCG2 NM_002661 exon10 c.A829T p.M277L GACACCATGCGTG . 107.0 23.0 105.0 0.0 . 276 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578205 7578205 + Missense_Mutation SNP C C A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 TP53_ENST00000545858,NS,lymphoid_neoplasm,+1,1 TP53 NM_000546 exon6 c.G644T p.S215I ACCACACTATGTC . 121.0 57.0 144.0 0.0 . 33396 . . Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10307686 10307686 + Silent SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MYH8 NM_002472 exon22 c.C2649A p.L883L TTTTAAGAGAGTG . 93.0 29.0 133.0 0.0 . 346 . . Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17696772 17696772 + Silent SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . RAI1 NM_030665 exon3 c.C510T p.S170S TCACTCCCTGCAC . 81.0 14.0 149.0 0.0 . 121 . . Atlas-SNP EFCAB3 146779 hgsc.bcm.edu hg19 17 60493662 60493662 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . EFCAB3 NM_001144933 exon12 c.G1445A p.R482Q GAAAACGGAAAGG . 50.0 15.0 75.0 0.0 . 71 . . Atlas-SNP TMEM200C 645369 hgsc.bcm.edu hg19 18 5890394 5890394 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TMEM200C NM_001080209 exon1 c.C1669G p.Q557E GCGTTTGACCAGC . 49.0 8.0 50.0 0.0 . 30 . . Atlas-SNP GNAL 2774 hgsc.bcm.edu hg19 18 11753928 11753928 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . GNAL NM_182978 exon4 c.A608G p.D203G TCACTGACTTTGA . 207.0 91.0 184.0 0.0 . 59 . . Atlas-SNP NEDD4L 23327 hgsc.bcm.edu hg19 18 56033299 56033299 + Silent SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NEDD4L NM_001144967 exon21 c.A1902G p.R634R TCGGAGAATTATG . 68.0 26.0 67.0 0.0 . 126 . . Atlas-SNP ELANE 1991 hgsc.bcm.edu hg19 19 855638 855638 + Silent SNP C C T rs146878885 bycluster TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ELANE NM_001972 exon4 c.C441T p.N147N GGGCAACGGGGTG . 31.0 5.0 25.0 0.0 . 27 . C|1.000;T|0.000 Atlas-SNP OR2Z1 284383 hgsc.bcm.edu hg19 19 8842153 8842153 + Missense_Mutation SNP G G A rs200115143 TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 OR2Z1,NS,carcinoma,0,2 OR2Z1 NM_001004699 exon1 c.G763A p.A255T GGTGCCGCCGTGT . 89.0 4.0 103.0 0.0 . 53 . G|0.999;A|0.001 Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 8996440 8996440 + Missense_Mutation SNP G G C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MUC16 NM_024690 exon61 c.C41132G p.P13711R GGGTCAGGGTGGT . 90.0 12.0 120.0 0.0 . 4315 . . Atlas-SNP COLGALT1 79709 hgsc.bcm.edu hg19 19 17692114 17692114 + Nonsense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . . NM_024656 exon12 c.G1730A p.W577X TCGTATGGAACAA . 155.0 27.0 169.0 0.0 . . . . Atlas-SNP ZNF98 148198 hgsc.bcm.edu hg19 19 22575687 22575687 + Missense_Mutation SNP C C A rs140301665 bycluster;by1000genomes;alternate_allele TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ZNF98 NM_001098626 exon4 c.G350T p.R117L TTTTCACGTCCAC . 244.0 86.0 235.0 0.0 . 230 . C|0.998;T|0.002 Atlas-SNP NOVA2 4858 hgsc.bcm.edu hg19 19 46457193 46457193 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 NOVA2,NS,carcinoma,0,1 NOVA2 NM_002516 exon3 c.C241T p.R81W ATACCCGCTCTGT . 77.0 23.0 100.0 0.0 . 38 . . Atlas-SNP DBP 1628 hgsc.bcm.edu hg19 19 49136708 49136708 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . DBP NM_001352 exon3 c.A755G p.E252G TTCTGCTCCTCCG . 69.0 18.0 75.0 0.0 . 16 . . Atlas-SNP SIGLEC12 89858 hgsc.bcm.edu hg19 19 52001422 52001422 + Missense_Mutation SNP T T C novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SIGLEC12 NM_053003 exon5 c.A1255G p.T419A TCAGGGTCAGGCT . 36.0 19.0 63.0 0.0 . 243 . . Atlas-SNP ZNF175 7728 hgsc.bcm.edu hg19 19 52091277 52091277 + Missense_Mutation SNP G G A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ZNF175 NM_007147 exon5 c.G1693A p.G565R GAATGTGGGAAAG . 63.0 6.0 82.0 0.0 . 65 . . Atlas-SNP TARM1 441864 hgsc.bcm.edu hg19 19 54577312 54577312 + Missense_Mutation SNP C C T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . TARM1 NM_001135686 exon4 c.G518A p.S173N GCTGGACTCTGCA . 134.0 9.0 114.0 0.0 . 10 . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9520141 9520141 + Missense_Mutation SNP C C A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PAK7 NM_177990 exon10 c.G2128T p.V710F GGGGGACGATGCA . 116.0 57.0 112.0 0.0 . 194 . . Atlas-SNP BPIFB4 149954 hgsc.bcm.edu hg19 20 31672750 31672750 + Missense_Mutation SNP G G T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 C20orf186,NS,carcinoma,0,1 . NM_182519 exon4 c.G730T p.G244C CTGCCCGGCGTGG . 16.0 5.0 20.0 0.0 . . . . Atlas-SNP PLCG1 5335 hgsc.bcm.edu hg19 20 39802162 39802162 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . PLCG1 NM_182811 exon28 c.A3382G p.T1128A CAGAAGACAGAGT . 45.0 4.0 49.0 0.0 . 111 . . Atlas-SNP POTEH 23784 hgsc.bcm.edu hg19 22 16287459 16287459 + Missense_Mutation SNP A A T novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . POTEH NM_001136213 exon1 c.T427A p.F143I AGGGGAAGCAGTG . 607.0 108.0 743.0 0.0 . 114 . . Atlas-SNP SF3A1 10291 hgsc.bcm.edu hg19 22 30733037 30733037 + Missense_Mutation SNP T T A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SF3A1 NM_005877 exon13 c.A2084T p.E695V AACTCCTCCTCTG . 106.0 41.0 109.0 0.0 . 61 . . Atlas-SNP DNAJB7 150353 hgsc.bcm.edu hg19 22 41257117 41257117 + Missense_Mutation SNP T T G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . DNAJB7 NM_145174 exon1 c.A882C p.K294N CTTCTTTTTTTTC . 159.0 62.0 149.0 0.0 . 29 . . Atlas-SNP MOSPD2 158747 hgsc.bcm.edu hg19 X 14915353 14915353 + Missense_Mutation SNP A A G novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . MOSPD2 NM_152581 exon5 c.A470G p.N157S GAATAAATAGCAT . 93.0 82.0 94.0 0.0 . 46 . . Atlas-SNP SSX5 6758 hgsc.bcm.edu hg19 X 48054255 48054255 + Missense_Mutation SNP T T A novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . SSX5 NM_021015 exon4 c.A228T p.K76N CCACTCTTTCTCA . 145.0 105.0 178.0 0.0 . 41 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24832181 24832187 + Frame_Shift_Del DEL TCAAGCG TCAAGCG - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 TCAAGCG TCAAGCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . KIAA1217 NM_019590 exon19 c.3981_3987del p.1327_1329del . . 117.0 32.0 118.0 0.0 . 235 . . Atlas-Indel,Pindel NFAT5 10725 hgsc.bcm.edu hg19 16 69726159 69726159 + Frame_Shift_Del DEL G G - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . NFAT5 NM_138713 exon13 c.2430delT p.S810fs . . 68.0 17.0 65.0 0.0 . 184 . . Atlas-Indel,Pindel C11orf49 79096 hgsc.bcm.edu hg19 11 47182742 47182743 + Frame_Shift_Ins INS - - T rs34737621 TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . C11orf49 NM_001003676 exon8 c.822_823insT p.L274fs . . 79.0 17.0 101.0 0.0 . 41 . . Atlas-Indel,Pindel CWC22 57703 hgsc.bcm.edu hg19 2 180853328 180853332 + Frame_Shift_Del DEL TGATA TGATA - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 TGATA TGATA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . CWC22 NM_020943 exon3 c.68_72del p.23_24del . . 162.0 14.0 183.0 0.0 . 62 . . Atlas-Indel,Pindel B3GNTL1 146712 hgsc.bcm.edu hg19 17 80915065 80915065 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . B3GNTL1 NM_001009905 exon10 c.923delA p.D308fs . . 116.0 24.0 153.0 0.0 . 40 . . Atlas-Indel,Pindel ZNF488 118738 hgsc.bcm.edu hg19 10 48371553 48371554 + Frame_Shift_Del DEL TA TA - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 TA TA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . ZNF488 NM_153034 exon2 c.1020_1021del p.340_341del . . 48.0 15.0 38.0 0.0 . 38 . . Atlas-Indel,Pindel FAM72A 729533 hgsc.bcm.edu hg19 1 206145524 206145525 + Frame_Shift_Ins INS - - TC novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . FAM72A NM_001123168 exon3 c.301_302insTC p.F101fs . . 596.0 92.0 481.0 0.0 . 9 . . Atlas-INDEL KANSL1 284058 hgsc.bcm.edu hg19 17 44110522 44110526 + Frame_Shift_Del DEL GCAGG GCAGG - novel TCGA-UB-A7MF-01A-11D-A33K-10 TCGA-UB-A7MF-10A-01D-A33K-10 GCAGG GCAGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 681bd4c8-baed-4557-911b-588c343ee8cd ebf05fa8-848e-4a45-85ad-42311dac4923 . . NM_001193466 exon13 c.2758_2762del p.920_921del . . 65.0 14.0 82.0 0.0 . . . . Atlas-Indel,Pindel